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* gnu: r-batchelor: Update to 1.12.1.Ricardo Wurmus2022-05-30
| | | | * gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1.
* Merge branch 'wip-r'Ricardo Wurmus2022-05-29
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| * gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Update to 1.3.993.Ricardo Wurmus2022-05-29
| | | | | | | | * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): Update to 1.3.993.
| * gnu: Add r-msdata.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-msdata): New variable.
| * gnu: r-tcgabiolinksgui-data: Update to 1.16.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.16.0.
| * gnu: r-curatedtcgadata: Update to 1.18.0.Ricardo Wurmus2022-05-28
| | | | | | | | | | * gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.18.0. [native-inputs]: Add r-knitr.
| * gnu: r-gagedata: Update to 2.34.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-gagedata): Update to 2.34.0.
| * gnu: r-affydata: Update to 1.44.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-affydata): Update to 1.44.0.
| * gnu: r-all: Update to 1.38.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-all): Update to 1.38.0.
| * gnu: r-hsmmsinglecell: Update to 1.16.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.16.0.
| * gnu: r-pasilla: Update to 1.24.0.Ricardo Wurmus2022-05-28
| | | | | | | | | | | | * gnu/packages/bioconductor.scm (r-pasilla): Update to 1.24.0. [propagated-inputs]: Remove r-biocstyle, r-knitr, and r-rmarkdown. [native-inputs]: Add r-knitr.
| * gnu: r-genomationdata: Update to 1.28.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.28.0.
| * gnu: r-genelendatabase: Update to 1.32.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.32.0.
| * gnu: r-copyhelper: Update to 1.28.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.28.0.
| * gnu: r-chromstardata: Update to 1.22.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.22.0.
| * gnu: r-celldex: Update to 1.6.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-celldex): Update to 1.6.0.
| * gnu: r-biscuiteerdata: Update to 1.10.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.10.0.
| * gnu: r-arrmdata: Update to 1.32.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.32.0.
| * gnu: r-aneufinderdata: Update to 1.24.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.24.0.
| * gnu: r-adductdata: Update to 1.12.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-adductdata): Update to 1.12.0.
| * gnu: r-pfam-db: Update to 3.15.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.15.0.
| * gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.15.0.Ricardo Wurmus2022-05-28
| | | | | | | | | | * gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.15.0. [propagated-inputs]: Add r-annotationdbi.
| * gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.4.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.4.
| * gnu: r-bsgenome-hsapiens-ucsc-hg19: Update to 1.4.3.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): Update to 1.4.3.
| * gnu: r-leidenbase: Update to 0.1.9.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-leidenbase): Update to 0.1.9.
| * gnu: r-phyloseq: Update to 1.40.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.40.0.
| * gnu: r-tximeta: Update to 1.14.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.0.
| * gnu: r-tricycle: Update to 1.4.0.Ricardo Wurmus2022-05-28
| | | | | | | | | | * gnu/packages/bioconductor.scm (r-tricycle): Update to 1.4.0. [propagated-inputs]: Add r-ggnewscale.
| * gnu: r-tcgabiolinks: Update to 2.24.1.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.1.
| * gnu: r-biscuiteer: Update to 1.10.0.Ricardo Wurmus2022-05-28
| | | | | | | | | | * gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.10.0. [propagated-inputs]: Add r-iranges.
| * gnu: r-omnipathr: Update to 3.4.0.Ricardo Wurmus2022-05-28
| | | | | | | | | | * gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.4.0. [propagated-inputs]: Add r-withr.
| * gnu: r-dmrseq: Update to 1.16.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.16.0.
| * gnu: r-bsseq: Update to 1.32.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-bsseq): Update to 1.32.0.
| * gnu: r-biotmle: Update to 1.20.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-biotmle): Update to 1.20.0.
| * gnu: r-biotip: Update to 1.10.0.Ricardo Wurmus2022-05-28
| | | | | | | | | | * gnu/packages/bioconductor.scm (r-biotip): Update to 1.10.0. [propagated-inputs]: Remove r-hmisc; add r-scran.
| * gnu: r-bioqc: Update to 1.24.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-bioqc): Update to 1.24.0.
| * gnu: r-bionetstat: Update to 1.16.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.0.
| * gnu: r-bionet: Update to 1.56.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-bionet): Update to 1.56.0.
| * gnu: r-bionero: Update to 1.4.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.0.
| * gnu: r-biomvrcns: Update to 1.36.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.36.0.
| * gnu: r-biomvcclass: Update to 1.64.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.64.0.
| * gnu: r-mvcclass: Update to 1.70.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.70.0.
| * gnu: r-biomformat: Update to 1.24.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-biomformat): Update to 1.24.0.
| * gnu: r-biodb: Update to 1.4.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.0.
| * gnu: r-biocdockermanager: Update to 1.8.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.0.
| * gnu: r-biocthis: Update to 1.6.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-biocthis): Update to 1.6.0.
| * gnu: r-basilisk: Update to 1.8.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.0.
| * gnu: r-basilisk-utils: Update to 1.8.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.8.0.
| * gnu: r-dir-expiry: Update to 1.4.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.4.0.
| * gnu: r-genetclassifier: Update to 1.36.0.Ricardo Wurmus2022-05-28
| | | | | | | | * gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.36.0.
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