| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
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* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
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* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
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* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
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* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
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* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.1.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.1.
[propagated-inputs]: Add r-tidyr.
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* gnu/packages/cran.scm (r-ggm): Move this variable from here...
* gnu/packages/bioconductor.scm (r-ggm): ...to here.
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* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
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* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
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* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.2.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.3.
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* gnu/packages/bioconductor.scm (r-nmf): Update to 0.22.0.
[propagated-inputs]: Add r-biobase and r-biocmanager.
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* gnu/packages/statistics.scm (r-nmf): Move this variable from here...
* gnu/packages/bioconductor.scm (r-nmf): ...to here.
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* gnu/packages/bioconductor.scm (r-lpsymphony)[home-page]: Use HTTPS.
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* gnu/packages/bioconductor.scm (r-codedepends)[home-page]: Use HTTPS.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment)[home-page]: Use HTTPS.
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* gnu/packages/bioconductor.scm (r-deconstructsigs): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.2.
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* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.8.
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* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.1.
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* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
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* gnu/packages/bioconductor (r-biocset)[description]: Fix typo.
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* gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked,
r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno,
r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise.
* gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
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* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
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* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2.
[propagated-inputs]: Remove r-rda.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4.
[propagated-inputs]: Add r-glimma.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1.
[propagated-inputs]: Add r-gdata.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1.
[propagated-inputs]: Add r-genomicranges.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.
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* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.
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* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.
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