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* gnu: linkchecker: Update to 10.0.1.Arun Isaac2021-06-20
| | | | | | | | | | | | | | | | | * gnu/packages/web.scm (linkchecker): Update to 10.0.1. [source]: Remove patches. [inputs]: Add python-beautifulsoup4. Replace python2-dnspython-1.16, python2-pyxdg and python2-requests with python-dnspython, python-pyxdg and python-requests respectively. [native-inputs]: Replace python2-pytest, python2-miniboa and python2-parameterized with python-pytest, python-miniboa and python-parameterized respectively. [arguments]: Use python 3. Replace check phase instead of deleting the standard phase and adding a custom one. Use add-installed-pythonpath instead of setting PYTHONPATH directly. Support disabling of tests with tests?. [home-page]: Update URI. * gnu/packages/patches/linkchecker-tests-require-network.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu: Remove bsdiff traces.Marius Bakke2021-06-19
| | | | | | | This is a follow-up to 373c7b5791acd8f377455be47260948b843dd5db. * gnu/packages/patches/bsdiff-CVE-2014-9862.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu: efivar: Adjust for GCC 10.Marius Bakke2021-06-19
| | | | | | | | * gnu/packages/patches/efivar-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/linux.scm (efivar)[source](patches, modules, snippet): New fields. [arguments]: Use CC-FOR-TARGET while at it.
* gnu: jfsutils: Adjust for GCC 10.Marius Bakke2021-06-19
| | | | | | * gnu/packages/patches/jfsutils-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/file-systems.scm (jfsutils)[source](patches): Add it.
* gnu: isc-dhcp: Adjust for GCC 10.Marius Bakke2021-06-19
| | | | | | * gnu/packages/patches/isc-dhcp-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/admin.scm (isc-dhcp)[source](patches): New field.
* gnu: ath9k-htc-firmware: Adjust for GCC 10.Marius Bakke2021-06-19
| | | | | | * gnu/packages/patches/ath9k-htc-firmware-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/firmware.scm (ath9k-htc-firmware)[source](patches): Add it.
* gnu: QEMU: Adjust for Sphinx 4.0.Marius Bakke2021-06-19
| | | | | | * gnu/packages/patches/qemu-sphinx-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (qemu)[source](patches): Add it.
* gnu: curl@7.77.0: Provide a correct TLS priority string.Ludovic Courtès2021-06-18
| | | | | | | | Fixes <https://bugs.gnu.org/49035>. * gnu/packages/patches/curl-7.77-tls-priority-string.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/curl.scm (curl-7.77.0)[source]: Use it.
* gnu: inkscape: Update to version 1.1.Boris A. Dekshteyn2021-06-18
| | | | | | | | | * gnu/packages/patches/inkscape-1.1-fix-build-witch-gcc7.5.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/inkscape.scm (inkscape-1.0) Rename to inkscape-1.1. * gnu/packages/inkscape.scm (inkscape-1.1) Update to version 1.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: brightnessctl: Add elogind support.Brice Waegeneire2021-06-17
| | | | | | | | | * gnu/packages/patches/brightnessctl-elogind-support.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/linux.scm (brightnessctl)[source]: Apply it. [make-flags]: Enable logind support. [native-inputs]: Add pkg-config. [inputs]: Add elogind.
* gnu: HexChat: Add Libera Chat to the list of networks.Leo Famulari2021-06-16
| | | | | | * gnu/packages/patches/hexchat-add-libera-chat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/messaging.scm (hexchat)[source]: Use it.
* gnu: Add rust-ndarray-0.13.Nicolas Goaziou2021-06-16
| | | | | | | * gnu/packages/crates-io.scm (rust-ndarray-0.13): New variable. (rust-ndarray-0.12): Inherit from above. * gnu/packages/patches/rust-ndarray-0.13-remove-blas-src.patch: New file. * gnu/local.mk: Register new file.
* gnu: tor: Update to 0.4.6.5.Tobias Geerinckx-Rice2021-06-14
| | | | | | | * gnu/packages/tor.scm (tor): Update to 0.4.6.5. [source]: Add a patch to fix building with GCC 7. * gnu/packages/patches/tor-fix-build-with-gcc-7.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: gcc-8: Make static libs reproducibleCarl Dong2021-06-14
| | | | | | | | | This fixes the nonreproducibility in gcc documented here: https://reproducible-builds.org/docs/archives/#gnu-libtool * gnu/packages/patches/gcc-8-sort-libtool-find-output.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gcc.scm (gcc-8)[source]: Apply it.
* gnu: Add irods.Ricardo Wurmus2021-06-14
| | | | | * gnu/packages/irods.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu: nettle-3.5: Add replacement to fix CVE-2021-3580 et al.Mark H Weaver2021-06-14
| | | | | | | | | * gnu/packages/patches/nettle-3.5-check-_pkcs1_sec_decrypt-msg-len.patch, gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt1.patch, gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/nettle.scm (nettle)[replacement]: New field. (nettle-3.5/fixed): New variable.
* gnu: connman: Fix CVE-2021-33833.Leo Famulari2021-06-13
| | | | | | * gnu/packages/patches/connman-CVE-2021-33833.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/connman.scm (connman)[source]: Use it.
* gnu: QEMU: Fix compatibility with Meson 0.58.Marius Bakke2021-06-13
| | | | | | * gnu/packages/patches/qemu-meson-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (qemu)[source](patches): Add it.
* gnu: libcacard: Update to 2.8.0.Marius Bakke2021-06-13
| | | | | | | | * gnu/packages/patches/libcacard-unknown-variable.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/spice.scm (libcacard): Update to 2.8.0. [source](patches): New field. [arguments]: Remove trailing #t.
* gnu: grub: Update to 2.06.Tobias Geerinckx-Rice2021-06-12
| | | | | | | | [source]: Remove upstreamed patches. * gnu/packages/patches/grub-setup-root.patch: Update patch. * gnu/packages/patches/grub-verifiers-Blocklist-fallout-cleanup.patch, gnu/packages/patches/grub-cross-system-i686.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: polkit: Add replacement for CVE-2021-3560.Ludovic Courtès2021-06-08
| | | | | | | * gnu/packages/patches/polkit-CVE-2021-3560.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/polkit.scm (polkit/fixed): New variable. (polkit)[replacement]: New field.
* gnu: xpra: Update to 4.2.Lars-Dominik Braun2021-06-07
| | | | | | | | | | | | | | Fixes <https://issues.guix.gnu.org/issue/48890>. * gnu/packages/xorg.scm (xpra): Update to 4.2. [source]: Switch to ".tar.gz" archive and update patch file. [native-inputs]: Add pandoc. [arguments]: Adjust custom 'fix-paths phase for changes in source. * gnu/packages/patches/xpra-4.2-systemd-run.patch: Adapt to new version and rename file. * gnu/local.mk (dist_patch_DATA): Rename file. Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
* gnu: freebayes: Update to 1.3.5.Efraim Flashner2021-06-06
| | | | | | | | | * gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.5. [source]: Remove patch. [arguments]: Adjust custom 'patch-source phase for changes in source. [inputs]: Remove zlib. * gnu/packages/patches/freebayes-devendor-deps.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: wgetpaste: Update to 2.32.Tobias Geerinckx-Rice2021-06-05
| | | | | | | * gnu/packages/wget.scm (wgetpaste): Update to 2.32. [source]: Remove patch. * gnu/packages/patches/wgetpaste-update-bpaste.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibilityCarl Dong2021-06-05
| | | | | | * gnu/packages/patches/nsis-source-date-epoch.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/installers.scm (make-nsis)[source]: Apply it.
* gnu: amule: Update to 2.3.3.Tobias Geerinckx-Rice2021-06-03
| | | | | | | * gnu/packages/networking.scm (amule): Update to 2.3.3. [source]: Remove patch. * gnu/packages/patches/amule-crypto-6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: julia-jllwrappers: Move to (gnu packages julia-jll).Efraim Flashner2021-05-30
| | | | | | * gnu/packages/julia-xyz.scm (julia-jlwrappers): Move to ... * gnu/packages/julia-jll.scm: ... here. * gnu/local.mk (GNU_SYSTEM_MODULES): Register julia-jll.scm
* gnu: Register gnu/services/ci.scm and gnu/tests/ci.scm.Arun Isaac2021-05-29
| | | | | | | This is a follow-up to commit eda4bb4f16f74436b0caf1c584888c89b3c4c69b. * gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/ci.scm and gnu/tests/ci.scm.
* gnu: Add mosaicatcher.Ricardo Wurmus2021-05-29
| | | | | | * gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
* gnu: lksctp-tools: Update to 1.0.19.Tobias Geerinckx-Rice2021-05-27
| | | | | | | * gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19. [source]: Remove patch. * gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: minimap2: Update to 2.18.Efraim Flashner2021-05-26
| | | | | | | * gnu/packages/bioinformatics.scm (minimap2): Update to 2.18. [source]: Remove patch. * gnu/packages/patches/minimap2-aarch64-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove unnecessary patches for emacs-geiser.Alexandr Vityazev2021-05-25
| | | | | | | | * gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch: * gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Apply file removal. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: autotrace: Prepare for GLib 2.68 and later.Marius Bakke2021-05-22
| | | | | | * gnu/packages/patches/autotrace-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/graphics.scm (autotrace)[source](patches): New field.
* gnu: libblockdev: Prepare for GLib 2.58.Marius Bakke2021-05-22
| | | | | | * gnu/packages/patches/libblockdev-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/disk.scm (libblockdev)[source](patches): New field.
* gnu: ucx: Restore (and adapt) ioctl fallback patch.Marius Bakke2021-05-22
| | | | | | | | | This is a followup to 4ebd4a58ce307874b18c30ffcd4852440e475ad5 which removed the patch, but it was still necessary for some dependents. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fabric-management.scm (ucx)[source](patches): New field.
* gnu: pinball: Update to 3.1.20201218.Eric Bavier2021-05-21
| | | | | | | | | | | | | | * gnu/packages/games.scm (pinball): Update to 3.1.20201218. [source]: Tarballs no longer published on sourceforge, so use git-fetch. [native-inputs]: New field for bootstrapping inputs. [inputs]: Add libltdl. [arguments]: Add custom 'bootstrap' phase. * gnu/packages/patches/pinball-system-ltdl.patch: Adjust to latest source. * gnu/packages/patches/pinball-const-fix.patch, gnu/packages/patches/pinball-cstddef.patch, gnu/packages/patches/pinball-missing-separators.patch, gnu/packages/patches/pinball-src-deps.patch: Delete upstreamed patches. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: Add libxml2-xpath0.David Larsson2021-05-18
| | | | | | | | * gnu/packages/patches/libxml2-xpath0-Add-option-xpath0.patch: New file... * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/xml.scm (libxml2-xpath0): New variable. Signed-off-by: Marius Bakke <marius@gnu.org>
* gnu: ucx: Update to 1.9.0.Marius Bakke2021-05-18
| | | | | | | * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fabric-management.scm (ucx): Update to 1.9.0. [source](patches): Remove.
* gnu: rxvt-unicode: Update to 9.26.Tobias Geerinckx-Rice2021-05-18
| | | | | | | * gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.26. [source]: Remove upstreamed patch. * gnu/packages/patches/rxvt-unicode-escape-sequences.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: disarchive: Fix build when cross-compiling.Maxim Cournoyer2021-05-17
| | | | | | | | | | | This follows commit 0b1f70d1a7, which inadvertently broke the build of Guix for i586-pc-gnu (Hurd). * gnu/packages/patches/disarchive-cross-compilation.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/backup.scm (disarchive)[source]: Apply it. [phases]{delete-configure}: New phase. [native-inputs]: Add guile-3.0 and guile-gcrypt.
* gnu: mercurial: Patch to make it read HGEXTENSIONPATH.Xinglu Chen2021-05-16
| | | | | | | | | | | | | This will make Mercurial be able to find third-party extensions installed with Guix, without having to set PYTHONPATH. * gnu/packages/patches/mercurial-hg-extension-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Register the patch. * gnu/packages/version-control.scm (mercurial)[origin](patches): Apply the patch. [native-search-paths]: Add HGEXTENSIONPATH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Graphviz: Fix CVE-2020-18032.Leo Famulari2021-05-15
| | | | | | | * gnu/packages/patches/graphviz-CVE-2020-18032.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/graphviz.scm (graphviz)[replacement]: New field. (graphviz/fixed): New variable.
* gnu: hplip: Update to 3.21.4.Tobias Geerinckx-Rice2021-05-13
| | | | | | | | | * gnu/packages/cups.scm (hplip): Update to 3.21.4. [source]: Remove fussy patch. Replace it with an short snippet substitution and... [arguments]: ...the new "--disable-imageProcessor-build" configure flag. * gnu/packages/patches/hplip-remove-imageprocessor.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: snappy: Update to 1.1.9.Tobias Geerinckx-Rice2021-05-13
| | | | | | | | | | * gnu/packages/compression.scm (snappy): Update to 1.1.9. [source]: Add another patch. [arguments]: Add new #:configure-flags and an 'unpack-third_party-subprojects phase. [native-inputs]: Add the sources for benchmark and googletests. * gnu/packages/patches/snappy-add-inline-for-GCC.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: Add giara.Raghav Gururajan2021-05-11
| | | | | | * gnu/packages/syndication.scm (giara): New variable. * gnu/packages/patches/giara-fix-login.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: ExifTool: Fix CVE-2021-22204Leo Famulari2021-05-09
| | | | | | * gnu/packages/patches/perl-image-exiftool-CVE-2021-22204.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/photo.scm (perl-image-exiftool)[source]: Use it.
* gnu: Add tla2tools.Mike Gerwitz2021-05-05
| | | | | | | | | | | | | | | | | | | | | | | | | This introduces tla2tools.jar, which contains the TLA+ model checker and simulator (TLC); a TLA+ REPL; a semantic analyzer (SANY); the TLATeX typesetting system; PlusCal translator; and more. I have added five wrapper scripts for convenience, rather than invoking `java' manually. The wrapper scripts are not comprehensive; users who are familiar with tla2tools.jar, or have read the book Specifying Systems, may still invoke the commands in the traditional way. The minimum JDK version is 11. I chose to stick with that rather than bumping it to 14 (which is the largest version currently in Guix) because each OpenJDK version in Guix depends on the version before it, and so it needlessly results in many 100s of MiB of unnecessary dependencies. Note that this is _not_ the TLA+ Toolbox, which is the GUI commonly used with TLA+. * gnu/packages/java.scm (tla2tools): New variable. * gnu/packages/patches/tla2tools-build-xml.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: racket: Remove obsolete patch.Philip McGrath2021-05-05
| | | | | | | | | | | * gnu/packages/racket.scm (racket)[source](patches): Remove "racket-store-checksum-override.patch", which is no longer needed since we stopped injecting store paths into Racket files in commit 834aa48: see <https://issues.guix.gnu.org/47180>. * gnu/packages/patches/racket-store-checksum-override.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: racket: Move to (gnu packages racket).Philip McGrath2021-05-05
| | | | | | | | | * gnu/packages/scheme.scm (racket,racket-minimal): Move to ... * gnu/packages/racket.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/racket.scm (racket)[synopsis]: Tweak. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: busybox: Update to 1.33.1.Tobias Geerinckx-Rice2021-05-04
| | | | | | | * gnu/packages/busybox.scm (busybox): Update to 1.33.1. [source]: Remove upstreamed patch. * gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
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