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* gnu: bluez: Remove leftover patch.Marius Bakke2017-09-20
| | | | | | | This is a follow-up to commit 164fccea7eead86c6ebe389bc0255c72b161d109. * gnu/packages/patches/bluez-CVE-2017-1000250.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: gd: Remove graft for 2.2.5.Marius Bakke2017-09-20
| | | | | | | | | | | * gnu/packages/gd.scm (gd): Update to 2.2.5. [source]: Remove obsolete patches. [replacement]: Remove field. (gd-2.2.5): Remove variable. * gnu/packages/patches/gd-fix-gd2-read-test.patch, gnu/packages/patches/gd-php-73968-Fix-109-XBM-reading.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove patches. * gnu/packages/php.scm (php)[inputs]: Replace GD-2.2.5 with GD.
* Merge branch 'master' into stagingMarius Bakke2017-09-20
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| * gnu: newsbeuter: Fix CVE-2017-14500.Efraim Flashner2017-09-18
| | | | | | | | | | | | * gnu/packages/syndication.scm (newsbeuter)[source]: Add patch. * gnu/packages/patches/newsbeuter-CVE-2017-14500.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
| * gnu: httpd: Patch "options bleed" [fixes CVE-2017-9798].Ludovic Courtès2017-09-18
| | | | | | | | | | | | * gnu/packages/patches/httpd-CVE-2017-9798.patch: New file. * gnu/packages/web.scm (httpd)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
| * gnu: certbot: Fix build with python-pyopenssl >= 17.3.0.Marius Bakke2017-09-17
| | | | | | | | | | | | * gnu/packages/patches/python-acme-dont-use-openssl-rand.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/tls.scm (python-acme)[source]: Use it.
| * gnu: ruby-2.2: Update to 2.2.8. Fix CVE-2017-{0898,10784,14033,14064}.Ben Woodcroft2017-09-17
| | | | | | | | | | | | | | * gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.8. [source]: Remove patch. * gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
| * gnu: ruby-2.3: Update to 2.3.5. Fix CVE-2017-{0898,10784,14033,14064}.Ben Woodcroft2017-09-17
| | | | | | | | | | | | | | * gnu/packages/ruby.scm (ruby-2.3): Update to 2.3.5. [source]: Remove patch. * gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
| * ruby: Update replacement to 2.4.2. Fix CVE-2017-{0898,10784,14033,14064}.Ben Woodcroft2017-09-17
| | | | | | | | | | | | | | | | | | | | * gnu/packages/ruby.scm (ruby): Update replacement to 2.4.2. (ruby-2.4.1): Rename to ... (ruby-2.4.2): ... this. [source]: Remove patches. * gnu/packages/patches/ruby-rubygems-2612-ruby24.patch, gnu/packages/patches/ruby-rubygems-2613-ruby24.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
| * gnu: Add meson-for-build.Peter Mikkelsen2017-09-16
| | | | | | | | | | | | | | | | * gnu/packages/build-tools.scm (meson-for-build): New variable. * gnu/packages/patches/meson-for-build-rpath.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add openfoam.Paul Garlick2017-09-15
| | | | | | | | | | | | | | | | | | *gnu/packages/patches/openfoam-4.1-cleanup.patch: New file *gnu/packages/simulation.scm: New file *gnu/local.mk (GNU_SYSTEM_MODULES): Add module. (dist_patch_DATA): Add patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add gnucobol.Efraim Flashner2017-09-15
| | | | | | | | | | * gnu/packages/cobol.scm (gnucobol): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
| * gnu: graphicsmagick: Fix CVE-2017-{11403,14103}.Kei Kebreau2017-09-14
| | | | | | | | | | | | | | * gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch. * gnu/packages/patches/graphicsmagick-CVE-2017-11403+CVE-2017-14103.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
| * gnu: bluez: Add replacement to fix CVE-2017-1000250.Mark H Weaver2017-09-13
| | | | | | | | | | | | | | * gnu/packages/patches/bluez-CVE-2017-1000250.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (bluez)[replacement]: New field. (bluez/fixed): New variable.
| * file-systems: Introduce (gnu system uuid).Ludovic Courtès2017-09-11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/build/file-systems.scm (sub-bytevector) (latin1->string, %fat32-endianness, fat32-uuid->string) (%iso9660-uuid-rx, string->iso9660-uuid) (iso9660-uuid->string, %network-byte-order) (dce-uuid->string, %uuid-rx, string->dce-uuid) (string->ext2-uuid, string->ext3-uuid, string->ext4-uuid) (vhashq, %uuid-parsers, %uuid-printers, string->uuid) (uuid->string): Move to... * gnu/system/uuid.scm: ... here. New file. * gnu/system/file-systems.scm (uuid): Move to the above file. * gnu/system/vm.scm: Adjust accordingly. * gnu/local.mk (GNU_SYSTEM_MODULES): Add uuid.scm.
| * gnu: emacs: Patch message-mode enriched text translation [security fix].Ludovic Courtès2017-09-11
| | | | | | | | | | | | | | * gnu/packages/patches/emacs-unsafe-enriched-mode-translations.patch: New file. * gnu/packages/emacs.scm (emacs)[source](patches): Add it. * gnu/local.mk (dist_patch_DATA): Add it.
| * gnu: openjpeg: Fix CVE-2017-14164.Efraim Flashner2017-09-10
| | | | | | | | | | | | * gnu/packages/image.scm (openjpeg)[source]: Add patch. * gnu/packages/patches/openjpeg-CVE-2017-14164.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
| * gnu: graphicsmagick: Fix CVE-2017-14165.Efraim Flashner2017-09-10
| | | | | | | | | | | | * gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch. * gnu/packages/patches/graphicsmagick-CVE-2017-14165.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
| * gnu: graphicsmagick: Fix CVE-2017-14042.Kei Kebreau2017-09-10
| | | | | | | | | | | | * gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch. * gnu/packages/patches/graphicsmagick-CVE-2017-14042.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
| * gnu: foomatic-filters: Add missing patches.Ludovic Courtès2017-09-10
| | | | | | | | | | | | | | | | This is a followup to commit d02aabaf1b57eda3ef052c70df1322f915e7c736. * gnu/packages/patches/foomatic-filters-CVE-2015-8327.patch: New file. * gnu/packages/patches/foomatic-filters-CVE-2015-8560.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them.
| * gnu: elogind: Use itself as the cgroup controller.Ludovic Courtès2017-09-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes a regression introduced in fa67d5654176b4b815832eaf259188e1486c65ab whereby elogind would fail to start with: Cannot determine cgroup we are running in: No data available Out of memory. thereby preventing log-in altogether. * gnu/packages/freedesktop.scm (elogind)[arguments]: Pass "--with-cgroup-controller=elogind". * gnu/tests/desktop.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
| * gnu: tcpdump: Update to 4.9.2 [security fixes].Leo Famulari2017-09-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes CVE-2017-{12893,12894,12895,12896,12897,12898,12899,12900,12901,12902, 12985,12986,12987,12988,12989,12990,12991,12992,12993,12994,12995,12996,12997, 12998,12999,13000,13001,13002,13003,13004,13005,13006,13007,13008,13009,13010, 13012,13013,13014,13015,13016,13017,13018,13019,13020,13021,13022,13023,13024, 13025,13026,13027,13028,13029,13030,13031,13032,13033,13034,13035,13036,13037, 13038,13039,13040,13041,13042,13043,13044,13045,13046,13047,13048,13049,13050, 13051,13052,13053,13054,13055,13687,13688,13689,13690,13725}. * gnu/packages/admin.scm (tcpdump): Update to 4.9.2. [source]: Remove patches and add alternate source URL. * gnu/packages/patches/tcpdump-CVE-2017-11541.patch, gnu/packages/patches/tcpdump-CVE-2017-11542.patch, gnu/packages/patches/tcpdump-CVE-2017-11543.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
| * gnu: qemu: Fix CVE-2017-{13711,14167}.Leo Famulari2017-09-07
| | | | | | | | | | | | | | * gnu/packages/patches/qemu-CVE-2017-14167.patch gnu/packages/patches/qemu-CVE-2017-13711.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/virtualization.scm (qemu)[source]: Use them.
| * gnu: libarchive: Replace with libarchive 3.3.2 and fix CVE-2017-14166.Leo Famulari2017-09-07
| | | | | | | | | | | | | | * gnu/packages/backup.scm (libarchive)[replacement]: New field. (libarchive-3.3.2): New variable. * gnu/packages/patches/libarchive-CVE-2017-14166.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
| * gnu: libzip: Update to 1.3.0 (fixes CVE-2017-14107).Efraim Flashner2017-09-06
| | | | | | | | | | | | | | | | * gnu/packages/compression.scm (libzip): Update to 1.3.0. [source]: Remove patch. [arguments]: Remove custom 'patch-perl phase. * gnu/packages/patches/libzip-CVE-2017-12858.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
| * gnu: openjpeg: Fix CVE-2017-14151, CVE-2017-14152.Efraim Flashner2017-09-06
| | | | | | | | | | | | | | * gnu/packages/image.scm (openjpeg)[source]: Add patches. * gnu/packages/patches/openjpeg-CVE-2017-14151.patch, gnu/packages/patches/openjpeg-CVE-2017-14152.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
| * gnu: csound: Update to 6.09.1.Nicolas Goaziou2017-09-06
| | | | | | | | | | | | * gnu/packages/audio.scm (csound): Update to 6.09.1. Change source URI. * gnu/packages/patches/csound-header-ordering.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove reference to patch above.
| * gnu: Update calibre to 3.6.0.Roel Janssen2017-09-06
| | | | | | | | | | | | | | * gnu/local.mk: Remove calibre-drop-unrar.patch * gnu/packages/ebook.scm (calibre): Update to 3.6.0. Add python-html5-parser input. * gnu/packages/patches/calibre-drop-unrar.patch: Remove file.
| * gnu: file: Fix CVE-2017-1000249.Efraim Flashner2017-09-05
| | | | | | | | | | | | | | | | * gnu/packages/file.scm (file)[replacement]: New field. (file/fixed): New variable. * gnu/packages/commencement.scm (file-boot0): Use package/inherit. * gnu/packages/patches/file-CVE-2017-1000249.patch. * gnu/local.mk (dist_patch_DATA): Register it.
| * gnu: tcpdump: Fix CVE-2017-[11541,11542,11543].Leo Famulari2017-09-05
| | | | | | | | | | | | | | | | * gnu/packages/patches/tcpdump-CVE-2017-11541.patch, gnu/packages/patches/tcpdump-CVE-2017-11542.patch gnu/packages/patches/tcpdump-CVE-2017-11543.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/admin.scm (tcpdump)[source]: Use them.
* | Merge branch 'master' into stagingMarius Bakke2017-09-04
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| * gnu: node: Update to 8.4.0.Jelle Licht2017-09-02
| | | | | | | | | | | | | | * gnu/packages/patches/node-9077.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/node.scm (node): Update to 8.4.0. (node)[arguments]: Removed broken linter test. Removed dns test.
| * gnu: openjpeg: Fix CVE-2017-{14040,14041}.Kei Kebreau2017-09-02
| | | | | | | | | | | | | | * gnu/packages/image.scm (openjpeg)[source]: Add patches. * gnu/packages/patches/openjpeg-CVE-2017-14040.patch, gnu/packages/patches/openjpeg-CVE-2017-14041.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
* | gnu: gdk-pixbuf: Update to 2.36.9.Marius Bakke2017-09-02
|/ | | | | | | * gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.36.9. [source]: Remove obsolete patch. * gnu/packages/patches/gdk-pixbuf-list-dir.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: metabat: Update to 2.12.1.Ben Woodcroft2017-09-01
| | | | | | | * gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1. [source]: Remove it. Use url-fetch.
* gnu: python2-larch: Enable tests.Arun Isaac2017-09-01
| | | | | | | | * gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python2-larch)[source]: Use it. [arguments]: Move 'check' phase to before 'build' phase.
* gnu: graphicsmagick: Fix CVE-2017-{13775,13776,13777}.Efraim Flashner2017-09-01
| | | | | | | | * gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patches. * gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch, gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
* gnu: libxml2: Fix CVE-2017-{0663,7375,7376,9047,9048,9049,9050}.Alex Vong2017-08-31
| | | | | | | | | | | | | * gnu/packages/patches/libxml2-CVE-2017-0663.patch, gnu/packages/patches/libxml2-CVE-2017-7375.patch, gnu/packages/patches/libxml2-CVE-2017-7376.patch, gnu/packages/patches/libxml2-CVE-2017-9047+CVE-2017-9048.patch, gnu/packages/patches/libxml2-CVE-2017-9049+CVE-2017-9050.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xml.scm (libxml2)[replacement]: New field. (libxml2/fixed): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: ruby-2.2.7: Fix CVE-2017-{0899,0900,0901,0902}.Ben Woodcroft2017-08-31
| | | | | | * gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ruby.scm (ruby-2.2.7)[source]: Use it.
* gnu: ruby-2.3.4: Fix CVE-2017-{0899,0900,0901,0902}.Ben Woodcroft2017-08-31
| | | | | | * gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ruby.scm (ruby-2.3.4)[source]: Use it.
* gnu: ruby-2.4.1: Fix CVE-2017-{0899,0900,0901,0902}.Ben Woodcroft2017-08-31
| | | | | | | * gnu/packages/patches/ruby-rubygems-2612-ruby24.patch, gnu/packages/patches/ruby-rubygems-2613-ruby24.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/ruby.scm (ruby-2.4.1)[source]: Use them.
* gnu: metabat: Update to 2.11.3.Ben Woodcroft2017-08-31
| | | | | | | * gnu/packages/bioinformatics.scm (metabat): Update to 2.11.3. [source]: Use git-fetch. Remove boost-related patch. * gnu/packages/patches/metabat-fix-boost-issue.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: gd: Replace with 2.2.5.Marius Bakke2017-08-31
| | | | | | | | | | | Fixes CVE-2017-6362 and CVE-2017-7890. * gnu/packages/gd.scm (gd)[replacement]: New field. (gd-2.2.5): New variable. * gnu/packages/php.scm (gd-for-php): Remove variable (php)[inputs]: Replace GD-FOR-PHP with GD-2.2.5. * gnu/packages/patches/gd-CVE-2017-7890.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: qemu: Update to 2.10.0.Marius Bakke2017-08-30
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/qemu-CVE-2017-10664.patch, gnu/packages/patches/qemu-CVE-2017-10806.patch, gnu/packages/patches/qemu-CVE-2017-10911.patch, gnu/packages/patches/qemu-CVE-2017-11334.patch, gnu/packages/patches/qemu-CVE-2017-11434.patch, gnu/packages/patches/qemu-CVE-2017-12809.patch: gnu/packages/patches/qemu-CVE-2017-7493.patch, gnu/packages/patches/qemu-CVE-2017-8112.patch, gnu/packages/patches/qemu-CVE-2017-8309.patch, gnu/packages/patches/qemu-CVE-2017-8379.patch, gnu/packages/patches/qemu-CVE-2017-8380.patch, gnu/packages/patches/qemu-CVE-2017-9524.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (qemu): Update to 2.10.0. [source](patches): Remove.
* gnu: multiqc: Update to 1.2.Ricardo Wurmus2017-08-30
| | | | | | | | | | * gnu/packages/bioinformatics.scm (multiqc): Update to 1.2. [source]: Remove patches. [arguments]: Remove to enable tests. [propagated-inputs]: Add python-spectra, python-requests, python-markdown, python-lzstring. * gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* Update e-mail for Kei Kebreau.Kei Kebreau2017-08-29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * .mailmap: Map kei@openmailbox.org to current address. * gnu/local.mk: Replace kei@openmailbox.org to current address. * gnu/packages/backup.scm: Likewise. * gnu/packages/calendar.scm: Likewise. * gnu/packages/check.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/documentation.scm: Likewise. * gnu/packages/emacs.scm: Likewise. * gnu/packages/fltk.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/game-development.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/gnustep.scm: Likewise. * gnu/packages/gtk.scm: Likewise. * gnu/packages/hexedit.scm: Likewise. * gnu/packages/image.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/xfce.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/tcl.scm: Likewise. * gnu/packages/textutils.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/web.scm: Likewise. * gnu/packages/web-browsers.scm: Likewise. * gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
* gnu: libzip: Fix CVE-2017-12858.Leo Famulari2017-08-27
| | | | | | * gnu/packages/patches/libzip-CVE-2017-12858.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/compression.scm (libzip)[source]: Use it.
* gnu: wxwidgets: Update to 3.0.3.Leo Famulari2017-08-27
| | | | | | | * gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.3. [source]: Remove 'wxwidgets-fix-windowGTK.patch'. * gnu/packages/patches/wxwidgets-fix-windowGTK.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* Merge branch 'core-updates'Marius Bakke2017-08-26
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| * Merge branch 'master' into core-updatesMarius Bakke2017-08-21
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