| Commit message (Collapse) | Author | Age |
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* gnu/packages/graphviz.scm (graphviz): Update to 2.47.1.
[source]: Adjust for new download location.
* gnu/packages/patches/graphviz-CVE-2020-18032.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
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* gnu/packages/patches/curl-7.76-use-ssl-cert-env.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/curl.scm (curl): Update to 7.77.0.
[replacement]: Remove.
(source)[patches]: Adjust for new patch.
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This is something Fedora already does since 2010, so it should be safe,
and saves a lot of space.
* gnu/packages/patches/python-2.7-no-static-lib.patch: New file.
* gnu/packages/patches/python-3-no-static-lib.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python.scm (python-2.7, python-3): Use them.
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Conflicts:
gnu/local.mk
gnu/packages/algebra.scm
gnu/packages/bioinformatics.scm
gnu/packages/curl.scm
gnu/packages/docbook.scm
gnu/packages/emacs-xyz.scm
gnu/packages/maths.scm
gnu/packages/plotutils.scm
gnu/packages/python-web.scm
gnu/packages/python-xyz.scm
gnu/packages/radio.scm
gnu/packages/readline.scm
gnu/packages/tls.scm
gnu/packages/xml.scm
gnu/packages/xorg.scm
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* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.5.
[source]: Remove patch.
[arguments]: Adjust custom 'patch-source phase for changes in source.
[inputs]: Remove zlib.
* gnu/packages/patches/freebayes-devendor-deps.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/wget.scm (wgetpaste): Update to 2.32.
[source]: Remove patch.
* gnu/packages/patches/wgetpaste-update-bpaste.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/patches/nsis-source-date-epoch.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/installers.scm (make-nsis)[source]: Apply it.
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* gnu/packages/networking.scm (amule): Update to 2.3.3.
[source]: Remove patch.
* gnu/packages/patches/amule-crypto-6.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/julia-xyz.scm (julia-jlwrappers): Move to ...
* gnu/packages/julia-jll.scm: ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register julia-jll.scm
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This is a follow-up to commit eda4bb4f16f74436b0caf1c584888c89b3c4c69b.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/ci.scm and
gnu/tests/ci.scm.
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* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
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* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19.
[source]: Remove patch.
* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18.
[source]: Remove patch.
* gnu/packages/patches/minimap2-aarch64-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch:
* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Apply file removal.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/patches/nss-getcwd-nonnull.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/nss.scm (nss)[source](patches): Add it.
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The 3.7 branch, while not considered the "stable" branch upstream, has been
adopted by most major GNU/Linux distributions such as Debian, Arch, openSUSE,
etc. It has the benefit of receiving all the security fixes.
* gnu/packages/tls.scm (gnutls): Update to 3.7.2. Remove trailing #t.
[source]: Remove the gnutls-CVE-2021-20231.patch and
gnutls-CVE-2021-20232.patch patches, now incorporated in the source.
* gnu/packages/patches/gnutls-CVE-2021-20231.patch: Delete file.
* gnu/packages/patches/gnutls-CVE-2021-20232.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
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* guix/build-system/texlive.scm (%texlive-tag): Set to 2020.0.
(%texlive-revision): Set to 54632.
* gnu/packages/tex.scm (texlive-extra-src, texlive-texmf-src, texlive-bin,
texlive-texmf, texlive): Update to 20200406.
(texlive-bin)[source](patches): Remove.
[arguments]: Adjust poppler compatibility phase for new upstream patches.
* gnu/packages/tex.scm (hyph-utf8-scripts, texlive-docstrip, texlive-unicode-data
texlive-hyphen-base, texlive-dvips, texlive-metafont-base, texlive-fontinst,
texlive-fontname, texlive-tex-plain, texlive-hyphen-bulgarian, texlive-hyphen-chinese,
texlive-hyphen-hungarian, texlive-hyphen-latin, texlive-hyphen-sanskrit,
texlive-hyphen-spanish, texlive-hyph-utf8, texlive-kpathsea,
texlive-latexconfig, texlive-latex-base, texlive-union,
texlive-latex-filecontents, texlive-latex-fancyvrb, texlive-graphics-def,
texlive-latex-graphics, texlive-latex-oberdiek, texlive-latex-tools,
texlive-latex-l3kernel, texlive-latex-l3packages, texlive-latex-fontspec,
texlive-latex-amsmath, texlive-latex-babel, texlive-latex-draftwatermark,
texlive-etoolbox, texlive-latex-geometry, texlive-latex-polyglossia,
texlive-latex-supertabular, texlive-tex-texinfo, texlive-latex-appendix,
texlive-latex-colortbl, texlive-latex-listings, texlive-inconsolata,
texlive-latex-enumitem, texlive-latex-multirow, texlive-latex-overpic,
texlive-latex-parskip, texlive-latex-pdfpages, texlive-libertine,
texlive-latex-titlesec, texlive-metapost, texlive-latex-acmart,
texlive-latex-wasysym, texlive-latex-preview, texlive-latex-acronym,
texlive-pdftex, texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-ms,
texlive-generic-ulem, texlive-latex-pgf, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base,
texlive-beamer, texlive-pstricks, texlive-marginnote, texlive-iftex,
texlive-tools, texlive-siunitx, texlive-booktabs, texlive-csquotes,
texlive-biblatex, texlive-microtype, texlive-caption, texlive-ydoc,
texlive-courier, texlive-hyperref, texlive-fontspec, texlive-l3build,
texlive-luaotfload, texlive-babel, texlive-tipa, texlive-jknappen,
texlive-wasy, texlive-context, texlive-cabin, texlive-fourier,
texlive-mweights, texlive-newtx, texlive-xcharter, texlive-tcolorbox): Update
hashes.
(texlive-hyphen-bulgarian): Don't include removed files.
(texlive-hyphen-hungarian, texlive-hyphen-sanskrit): Adjust for directory
rename.
(texlive-hyphen-chinese, texlive-hyphen-latin): Add more files.
(texlive-hyphen-macedonian): New public variable.
(texlive-metafont-base)[source]: Switch to SVN-MULTI-FETCH.
[arguments]: Adjust for extra source files.
(texlive-latex-base)[arguments]: Disable more formats.
[propagated-inputs]: Add TEXLIVE-HYPHEN-MACEDONIAN.
(texlive-fontinst): Don't include "scripts/texlive/fontinst.sh".
(texlive-generic-iftex): New public variable.
(texlive-iftex, texlive-generic-ifxetex): Deprecate in favor of
TEXLIVE-GENERIC-IFTEX.
(texlive-latex-oberdiek)[propagated-inputs]: Change from
TEXLIVE-GENERIC-IFXETEX to TEXLIVE-GENERIC-IFTEX.
(texlive-latex-xkeyval)[native-inputs]: Likewise.
(texlive-default-updmap.cfg): Remove variable.
* gnu/packages/patches/texlive-bin-poppler-0.83.patch,
gnu/packages/patches/texlive-bin-poppler-0.86.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
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* gnu/packages/base.scm (binutils)[source]: Add patch.
* gnu/packages/patches/binutils-libiberty-endianness-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
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This patch was added on 'core-updates' in
43c889de85e79f279931d6cced261f54c9be5075, but no longer necessary since the
update to 2.3.1 in 91741db5397174a2e96b4010c3c9ff53d34e8ef0.
* gnu/packages/patches/python-pyflakes-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-pyflakes)[source](patches): Remove.
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* gnu/packages/patches/autotrace-glib-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/graphics.scm (autotrace)[source](patches): New field.
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* gnu/packages/patches/libblockdev-glib-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/disk.scm (libblockdev)[source](patches): New field.
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This is a followup to 4ebd4a58ce307874b18c30ffcd4852440e475ad5 which
removed the patch, but it was still necessary for some dependents.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx)[source](patches): New field.
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* gnu/packages/games.scm (pinball): Update to 3.1.20201218.
[source]: Tarballs no longer published on sourceforge, so use git-fetch.
[native-inputs]: New field for bootstrapping inputs.
[inputs]: Add libltdl.
[arguments]: Add custom 'bootstrap' phase.
* gnu/packages/patches/pinball-system-ltdl.patch: Adjust to latest source.
* gnu/packages/patches/pinball-const-fix.patch,
gnu/packages/patches/pinball-cstddef.patch,
gnu/packages/patches/pinball-missing-separators.patch,
gnu/packages/patches/pinball-src-deps.patch: Delete upstreamed patches.
* gnu/local.mk (dist_patch_DATA): Remove them.
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* gnu/packages/patches/libxml2-xpath0-Add-option-xpath0.patch: New file...
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/xml.scm (libxml2-xpath0): New variable.
Signed-off-by: Marius Bakke <marius@gnu.org>
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* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx): Update to 1.9.0.
[source](patches): Remove.
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* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.26.
[source]: Remove upstreamed patch.
* gnu/packages/patches/rxvt-unicode-escape-sequences.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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This follows commit 0b1f70d1a7, which inadvertently broke the build of Guix
for i586-pc-gnu (Hurd).
* gnu/packages/patches/disarchive-cross-compilation.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/backup.scm (disarchive)[source]: Apply it.
[phases]{delete-configure}: New phase.
[native-inputs]: Add guile-3.0 and guile-gcrypt.
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This will make Mercurial be able to find third-party extensions installed with
Guix, without having to set PYTHONPATH.
* gnu/packages/patches/mercurial-hg-extension-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
* gnu/packages/version-control.scm (mercurial)[origin](patches): Apply the
patch.
[native-search-paths]: Add HGEXTENSIONPATH.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/patches/graphviz-CVE-2020-18032.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/graphviz.scm (graphviz)[replacement]: New field.
(graphviz/fixed): New variable.
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* gnu/packages/patches/doxygen-1.8.17-runtests.patch,
gnu/packages/patches/doxygen-test.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/documentation.scm (doxygen): Update to 1.9.1.
[source](patches): Remove.
[home-page]: Use HTTPS.
[arguments]: Disable bibtex test with a phase instead of patch.
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* gnu/packages/patches/tcl-fix-cross-compilation.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/tcl.scm (tcl): Update to 8.6.11.
[source](patches): Remove.
[arguments]: Remove trailing #t's.
(tk): Update to 8.6.11.1.
[arguments]: Remove trailing #t's and reindent.
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* gnu/packages/patches/boost-fix-transitive-linking.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/boost.scm (boost): Update to 1.76.0.
[source](patches): Remove.
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* gnu/packages/patches/atlas-gfortran-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (atlas)[source](patches): New field.
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Reported by Marius Bakke.
* gnu/packages/patches/guile-ssh-read-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source]: Use it.
(guile2.0-ssh)[source]: New field.
(guile2.2-ssh)[source]: New field.
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* gnu/packages/cups.scm (hplip): Update to 3.21.4.
[source]: Remove fussy patch. Replace it with an short snippet
substitution and...
[arguments]: ...the new "--disable-imageProcessor-build" configure flag.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/compression.scm (snappy): Update to 1.1.9.
[source]: Add another patch.
[arguments]: Add new #:configure-flags and an
'unpack-third_party-subprojects phase.
[native-inputs]: Add the sources for benchmark and googletests.
* gnu/packages/patches/snappy-add-inline-for-GCC.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/syndication.scm (giara): New variable.
* gnu/packages/patches/giara-fix-login.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/patches/freeglut-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/gl.scm (freeglut)[source](patches): New field.
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* gnu/packages/patches/ghostscript-freetype-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.54.0.
[source](patches): Remove obsolete patch.
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* gnu/packages/cmake.scm (%common-disabled-tests): Don't disable BootstrapTest.
(cmake-bootstrap): Update to 3.20.2.
[source](modules, snippet): Move from here ...
(cmake-minimal)[source]: ... to here.
* gnu/packages/patches/mariadb-cmake-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/databases.scm (mariadb)[source](patches): Add it.
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* gnu/packages/patches/mit-krb5-hurd.patch: Adjust for 1.19.1.
* gnu/packages/patches/mit-krb5-qualify-short-hostnames.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/kerberos.scm (mit-krb5): Update to 1.19.1.
[source](patches): Remove obsolete patch.
[arguments]: Remove trailing #t's and one obsolete subtitution.
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These patches were pulled in via merges from 'master', but have no use on
'core-updates'.
* gnu/packages/patches/python-3.8-CVE-2021-3177.patch,
gnu/packages/patches/python-3.9-fix-tests.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
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Conflicts:
gnu/local.mk
gnu/packages/bioinformatics.scm
gnu/packages/django.scm
gnu/packages/gtk.scm
gnu/packages/llvm.scm
gnu/packages/python-web.scm
gnu/packages/python.scm
gnu/packages/tex.scm
guix/build-system/asdf.scm
guix/build/emacs-build-system.scm
guix/profiles.scm
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* gnu/packages/patches/perl-image-exiftool-CVE-2021-22204.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/photo.scm (perl-image-exiftool)[source]: Use it.
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This introduces tla2tools.jar, which contains the TLA+ model checker
and simulator (TLC); a TLA+ REPL; a semantic analyzer (SANY); the TLATeX
typesetting system; PlusCal translator; and more. I have added five
wrapper scripts for convenience, rather than invoking `java' manually.
The wrapper scripts are not comprehensive; users who are familiar with
tla2tools.jar, or have read the book Specifying Systems, may still
invoke the commands in the traditional way.
The minimum JDK version is 11. I chose to stick with that rather than
bumping it to 14 (which is the largest version currently in Guix)
because each OpenJDK version in Guix depends on the version before it,
and so it needlessly results in many 100s of MiB of unnecessary
dependencies.
Note that this is _not_ the TLA+ Toolbox, which is the GUI commonly used
with TLA+.
* gnu/packages/java.scm (tla2tools): New variable.
* gnu/packages/patches/tla2tools-build-xml.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/racket.scm (racket)[source](patches): Remove
"racket-store-checksum-override.patch", which is no longer needed since
we stopped injecting store paths into Racket files in commit 834aa48:
see <https://issues.guix.gnu.org/47180>.
* gnu/packages/patches/racket-store-checksum-override.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/scheme.scm (racket,racket-minimal): Move to ...
* gnu/packages/racket.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/racket.scm (racket)[synopsis]: Tweak.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/busybox.scm (busybox): Update to 1.33.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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