| Commit message (Collapse) | Author | Age |
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This is installed together with Python 3 anyway and for our build
of Python 2.
* gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip".
* gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove
"python2-pip". (python-reportlab)[properties]: remove "python2-variant".
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This patch contains the changes in python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited packge was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (where applicable).
* gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting
from a Python 3 package if adding python-setuptools respective
python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have
been the sole reason for inheriting. Remove now needless [properties]
"python2-variant" where applicable.
(python2-lockfile, python2-keyring, python2-dateutil-2,
python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov,
python2-pytest-runner, python2-pytest-xdist, python2-cov-core,
python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils,
python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress,
python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache,
python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2,
python2-pyquery, python2-webtest, python2-translitcodec, python2-editor,
python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject,
python2-flask, python2-cookies, python2-responses, python2-future,
python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi,
python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo,
python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2,
python2-url, python2-freezegun, python2-cachecontrol, python2-lit,
python2-pytest-pep8, python2-pytest-flakes, python2-glances,
python2-betamax, python2-file, python2-flask-babel, python2-furl,
python2-imagesize python2-orderedmultidict, python2-pycodestyle,
python2-vcversioner, python2-graphql-core, python2-graphql-relay,
python2-validictory): Remove neesless input "python2-setuptools", don't
inherit, don't call strip-python2-variant.
(python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime,
python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner,
python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr,
python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4,
python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg,
python-execnet, python-pytest-cache, python-wtforms, python-mako,
python-waitress, python-wsgiproxy2, python-pyquery, python-webtest,
python-translitcodec, python-editor, python-sphinxcontrib-programoutput,
python-psycopg2, python-vobject, python-flask, python-cookies,
python-responses, python-future, python-ply, python-wcwidth,
python-prompt-toolkit, python-jedi, python-requests-oauthlib,
python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics,
python-nltk, python-publicsuffix2, python-cachecontrol, python-lit,
python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax,
python-file, python-flask-babel, python-furl, python-imagesize,
python-orderedmultidict, python-pycodestyle, python-vcversioner,
python-graphql-core, python-graphql-relay, python-validictory): Remove
"python2-variant" property.
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This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
python-twobitreader, python2-twobitreader,
python-plastid, python2-plastid,
python2-pybigwig,
python2-screed,
sra-tools): No longer "inherit" Python 2 packages
inheriting from a Python 3 package if the sole reason for inheriting was
adding python-setuptools respective python2-setuptools to [inputs],
[native-inputs] or [propagated-inputs]. Remove now needless [properties]
"python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
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This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.
* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
python-setuptools respective python2-setuptools from [inputs],
[native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
python2-oauthlib,
python2-seaborn,
python2-tornado,
python2-terminado,
python2-rauth,
python2-anyjson,
python2-amqp,
python2-kombu,
python2-billiard,
python2-celery,
python2-jellyfish,
python2-binaryornot,
python2-natsort,
python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
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This patch contains the changes where removing setuptools from the inputs
affected some code-lines beside.
* gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and
[propagated-inputs] where python-setuptools or python2-setuptools are the
sole entries. Remove python-setuptools and python2-setuptools listed on a
line by its own from [inputs], [native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (duplicity): Likewise.
* gnu/packages/bioinformatics.scm (bamm, python2-pybedtools,
python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper,
crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm,
pbtranscript-tofu, seqmagick): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise.
* gnu/packages/lirc.scm (python2-lirc): Likewise.
* gnu/packages/mp3.scm (eyed3): Likewise.
* gnu/packages/nutrition.scm (gourmet): Likewise.
* gnu/packages/openstack.scm (python-hacking, python2-hacking,
python-os-testr, python2-os-testr,
python-stevedore, python2-stevedore,
python-tempest-lib, python2-tempest-lib,
python-oslo.log, python2-oslo.log,
python-keystoneclient, python2-keystoneclient): Likewise.
* gnu/packages/password-utils.scm (assword): Likewise.
* gnu/packages/python.scm (python-passlib, python2-passlib,
python-babel, python2-babel,
python-parse-type,
python-pytest, python2-pytest,
python-scripttest, python2-scripttest,
python-testtools, python2-testtools,
python-testscenarios, python2-testscenarios,
python-subunit, python2-subunit,
python-pbr-0.11,
python-pbr, python2-pbr,
python-testrepository, python2-testrepository,
behave,
python-wheel, python2-wheel,
python-requests, python2-requests,
python-jsonschema, python2-jsonschema,
python-pyjwt, python2-pyjwt,
python-virtualenv, python2-virtualenv,
python-jinja2, python2-jinja2,
python-joblib, python2-joblib,
python-sphinx, python2-sphinx,
python-feedgenerator, python2-feedgenerator,
python-scikit-image, python2-scikit-image,
python-redis, python2-redis,
python2-fastlmm,
python-numpydoc, python2-numpydoc,
python-matplotlib, python2-matplotlib,
python2-pysnptools,
python-rpy2, python2-rpy2,
python-pillow, python2-pillow,
python-pycparser, python2-pycparser,
python-cffi, python2-cffi,
python-cairocffi, python2-cairocffi,
python-drmaa, python2-drmaa,
python-pathpy, python2-pathpy,
python-simplegeneric, python2-simplegeneric,
python-ipython, python2-ipython,
python-apsw, python2-apsw,
python-lxml, python2-lxml,
python-networkx, python2-networkx,
python-pyzmq, python2-pyzmq,
python-mccabe, python2-mccabe,
python-mccabe-0.2.1,
python-flake8, python2-flake8,
python-flake8-2.2.4,
python-mistune, python2-mistune,
python-ptyprocess, python2-ptyprocess,
python-llfuse, python2-llfuse,
python-webob, python2-webob,
python-xlrd, python2-xlrd,
python-tables, python2-tables,
python-pip, python2-pip,
python-libarchive-c, python2-libarchive-c,
python-docopt, python2-docopt,
python-pyrfc3339, python2-pyrfc3339,
python-configobj, python2-configobj,
python-clint, python2-clint,
python-rply, python2-rply,
python2-rpython,
python-widgetsnbextension, python2-widgetsnbextension
jupyter,
python-jupyter-console, python2-jupyter-console,
python-hy, python2-hy,
python-urllib3, python2-urllib3,
python-rsa, python2-rsa,
python-tox, python2-tox,
python2-hypothesis,
python-paste, python2-paste,
python-pastescript, python2-pastescript,
python2-unicodecsv,
python-pkgconfig, python2-pkgconfig,
python2-rope,
python-sqlparse, python2-sqlparse,
python-gevent, python2-gevent,
python-tabulate, python2-tabulate,
python-arrow, python2-arrow,
python-cleo, python2-cleo,
python-fake-factory, python2-fake-factory,
ptpython): Likewise.
* gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise.
* gnu/packages/terminals.scm (asciinema): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise.
* gnu/packages/xdisorg.scm (arandr): Likewise.
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This patch contains the changes in all modules beside python.scm where
removing setuptools from the inputs could be achieved by removing complete
lines.
* gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs],
[native-inputs] and [propagated-inputs] where python-setuptools or
python2-setuptools are the sole entries. Remove python-setuptools and
python2-setuptools listed on a line by its own from [inputs],
[native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (rdiff-backup): Likewise.
* gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc,
multiqc): Likewise.
* gnu/packages/django.scm (python-django, python2-django,
python-django-simple-math-captcha, python2-django-simple-math-captcha):
Likewise.
* gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise.
* gnu/packages/game-development.scm (python-pygame): Likewise.
* gnu/packages/key-mon.scm (key-mon): Likewise.
* gnu/packages/mail.scm (khard): Likewise.
* gnu/packages/music.scm (beets, python2-pyechonest): Likewise.
* gnu/packages/openstack.scm (python-bandit, python2-bandit,
python-debtcollector, python2-debtcollector,
python-mox3, python2-mox3,
python-os-client-config, python2-os-client-config,
python-oslo.config, python2-oslo.config,
python-oslo.context, python2-oslo.context,
python-oslo.i18n, python2-oslo.i18n,
python-oslo.serialization, python2-oslo.serialization,
python-oslosphinx, python2-oslosphinx,
python-oslotest, python2-oslotest,
python-oslo.utils, python2-oslo.utils,
python-swiftclient, python2-swiftclient): Likewise.
* gnu/packages/pdf.scm (pdfposter): Likewise.
* gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
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This patch contains the changes in python.scm where removing setuptools from
the inputs could be achieved by removing complete lines.
* gnu/packages/python.scm (python-psutil, python2-psutil,
python-py-bcrypt, python2-py-bcrypt,
python-paramiko, python2-paramiko,
python-httplib2, python2-httplib2,
python-ecdsa, python2-ecdsa,
python-ccm, python2-ccm,
python2-backport-ssl-match-hostname,
python-pycrypto, python2-pycrypto,
python-six, python2-six,
python-dateutil, python2-dateutil,
python2-mechanize,
python-extras, python2-extras,
python-mimeparse, python2-mimeparse,
python-nose, python2-nose,
python-nose2, python2-nose2,
python-unittest2, python2-unittest2,
python-py, python2-py,
python-testresources, python2-testresources,
python-fixtures-0.3.16,
python-fixtures, python2-fixtures,
python-coverage, python2-coverage,
python-discover, python2-discover,
python-exif-read, python2-exif-read,
python-pyld, python2-pyld,
python-certifi, python2-certifi,
python-click, python2-click,
python-vcversioner, python2-vcversioner,
python-unidecode, python2-unidecode,
python-pyyaml, python2-pyyaml,
python-markupsafe, python2-markupsafe,
python-pystache, python2-pystache,
python-docutils, python2-docutils,
python-pygments, python2-pygments,
python-sphinx-rtd-theme, python2-sphinx-rtd-theme,
python-blinker, python2-blinker,
python-rq, python2-rq,
python-numpy, python2-numpy,
python-distutils-extra, python2-distutils-extra,
python2-elib.intl,
python-pillow, python2-pillow,
python-xcffib, python2-xcffib,
python-decorator, python2-decorator,
python-gridmap, python2-gridmap,
python-pickleshare, python2-pickleshare,
python-isodate, python2-isodate,
python-html5lib, python2-html5lib,
python2-cssutils,
python-cssselect, python2-cssselect,
python-netifaces, python2-netifaces,
python-sympy, python2-sympy,
python-testlib, python2-testlib,
python2-xlib,
python-singledispatch, python2-singledispatch,
python-backports-abc, python2-backports-abc,
python-pep8, python2-pep8,
python-pyflakes, python2-pyflakes,
python-fonttools, python2-fonttools,
python-ly,
python-appdirs, python2-appdirs,
python-netaddr, python2-netaddr,
python-wrapt, python2-wrapt,
python-iso8601, python2-iso8601,
python-monotonic, python2-monotonic,
python-prettytable, python2-prettytable,
python-pyasn1-modules, python2-pyasn1-modules,
python-idna, python2-idna,
python-pretend, python2-pretend,
python-cryptography-vectors, python2-cryptography-vectors,
python-cryptography, python2-cryptography,
python-pyopenssl, python2-pyopenssl,
python-debian, python2-debian,
python-chardet, python2-chardet,
python-zope-event, python2-zope-event,
python-zope-i18nmessageid, python2-zope-i18nmessageid,
python-websocket-client, python2-websocket-client,
python-args, python2-args,
python-astor, python2-astor,
python2-functools32,
python2-futures,
python2-promise,
python-colorama, python2-colorama,
python-pluggy, python2-pluggy,
python-jmespath, python2-jmespath,
python-botocore, python2-botocore,
awscli,
python-pytest-subtesthack, python2-pytest-subtesthack,
python-pastedeploy, python2-pastedeploy,
python-magic, python2-magic,
python2-s3cmd,
python2-bz2file,
python-cysignals, python2-cysignals,
python-py3status,
python-tblib, python2-tblib,
python-greenlet, python2-greenlet,
python-twisted, python2-twisted,
python-kazoo, python2-kazoo,
python-pykafka, python2-pykafka,
python2-jsonrpclib,
python-chai, python2-chai,
python-inflection, python2-inflection,
python-pylev, python2-pylev,
python-lazy-object-proxy, python2-lazy-object-proxy,
python-dnspython, python2-dnspython,
python-email-validator, python2-email-validator,
python-ukpostcodeparser, python2-ukpostcodeparser,
python-pyaml, python2-pyaml,
python-flexmock, python2-flexmock,
python-orator, python2-orator,
python-bleach, python2-bleach,
python-ipywidgets, python2-ipywidgets,
python-nbconvert, python2-nbconvert,
python-nbformat, python2-nbformat,
python-axolotl-curve25519, python-axolotl2-curve25519,
python-axolotl, python2-axolotl,
python-nautilus, python-s3transfer): Remove python-setuptools and
python2-setuptools from [inputs], [native-inputs] or [propagated-inputs].
Remove [inputs], [native-inputs] and [propagated-inputs] where
python-setuptools or python2-setuptools were the sole entry.
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* guix/scripts/lint.scm (check-inputs-should-be-native package): Add python
packages which are typically used for testing or for building the
documentation.
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Also refactor some common code into a new function.
Examples for these pacakges are python(2)-setuptools and python(2)-pip, which
are installed together with python itself.
* guix/scripts/lint.scm (warn-if-package-has-input): New procedure.
(check-inputs-should-be-native package): Use it; rename and clean-up
variables. (check-inputs-should-not-be-an-input-at-all): New procedure.
(%checkers) Add it.
* doc/guix.texi (Python Modules): Document it.
* tests/lint.scm: ("inputs: python-setuptools should not be an input at all
(input)", "inputs: python-setuptools should not be an input at all
(native-input)" "inputs: python-setuptools should not be an input at all
(propagated-input)"): Add tests.
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* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
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* guix/build/python-build-system.scm (check): Delete .egg-info dirs
which did not exist prior to calling setup.py but afterwards.
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* guix/build/python-build-system.scm (add-installed-pythonpath,
site-packages): New exported procedures.
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* guix/build-system/python.scm (python-build): New keyword argument
"#:use-setuptools?", defaulting to #t.
* guix/build/python-build-system.scm (call-setup-py): New positional
parameter "use-setuptools?". If false, do not use the shim-wrapper
for addin setuptools. (build, check): accept keyword-
parameter, and pass to call-setuppy. (install): same; if
"use-setuptools?" is false, do not use options "--root" and
"--single-version-externally-managed" for setup.py.
* doc/guix.texi (Build Systems): Document it.
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This is needed for packages using "distutils" instead of "setuptools" since
the former does not understand the "--single-version-externally-managed"
flag. Also export __file__ since it will be unset when setup.py is called from
python "exec".
* guix/build/python-build-system.scm (call-setuppy): extend "python setup.py"
call to import setuptools, export __file__, and call setup.py from
setuptools python environment.
Co-Authored-By: Hartmut Goebel <h.goebel@crazy-compilers.com>
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This requires setuptools to be installed together with python, which is
the case for Python 3 anyway and which we do for our build of Python 2
(see last commit).
* guix/build/python-build-system.scm (install): Add
"--single-version-externally-managed" and "--root=/" to params to be
passed to call-setuppy. Remove thus needless manipulation of
PYTHONPATH. Remove now unused argument "inputs".
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* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
configure-flags.
* doc/guix.texi (Python Modules): Document it.
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* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
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* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
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* gnu/packages/parallel.scm (parallel): Update to 20161022.
[home-page]: Use https.
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* gnu/packages/cdrom.scm (libcdio): Update to 0.94.
[home-page]: Use https.
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* gnu/packages/vpn.scm (gvpe): Update to 3.0.
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* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.3.
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* gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0.
[inputs]: Remove python-setuptools.
[properties]: New field.
(python2-vcversioner): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
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* gnu/packages/shells.scm (fish): Update to 2.4.0.
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* gnu/services/networking.scm (connman-shepherd-service): Add
wpa-supplicant among list of requirements.
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* gnu/services/networking.scm (wpa-supplicant-service): New procedure.
(wpa-supplicant-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
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* gnu/packages/connman.scm (connman): Use localstatedir outside of store.
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* gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check
phase with python nosetests.
[native-inputs]: Add python-nose.
[home-page]: Use https.
(python2-jsonschema)[native-inputs]: Add python2-mock.
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* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.
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* gnu/packages/package-management.scm (guix-devel): Update to commit
7ca37da855fd921fa3925bb62f8015f770b7e784.
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* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update
pattern in 'disable-container-tests' to match 'test-equal'.
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* gnu/packages/web.scm (libpsl): Update to 0.15.0.
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* gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib.
[native-inputs]: Add cairo, gtk+-3.
(libinput-minimal)[native-inputs]: Only pkg-config.
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* gnu/packages/freedesktop.scm: Reorder modules alphabetically.
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* gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.
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* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.
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* gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.
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* guix/import/cpan.scm (cpan-module->sexp) <version>: Test if version in
meta is string or number. If it is number, coerce to string.
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* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
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* gnu/packages/crypto.scm (signify): Update to 20.
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* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
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* gnu/packages/guile.scm (guile-ncurses): Update to 2.1.
[home-page]: Use https.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.
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* gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.
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* gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.
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* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4.
[source, home-page]: Move away from dead Google Code project.
[arguments, native-inputs]: Remove.
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Hello,
The containers test was hanging for me, and this patch fixed the
problem.
--
Andy
From 945ad44acf489b7f3a398d4ab739ec2b48477502 Mon Sep 17 00:00:00 2001
From: Andy Patterson <ajpatter@uwaterloo.ca>
Date: Sat, 12 Nov 2016 22:10:01 -0500
Subject: [PATCH] tests: Don't check file-systems in container tests.
* tests/containers.scm ("call-with-container, mnt namespace"): Don't
check file-system in 'call-with-container' call.
* tests/containers.scm
("call-with-container, mnt namespace, wrong bindmount"): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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