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* gnu: Add r-pcamethods.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-pcamethods): New variable.
* gnu: Add r-mzid.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-mzid): New variable.
* gnu: Add r-vsn.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-vsn): New variable.
* gnu: Add r-affy.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-affy): New variable.
* gnu: Add r-affyio.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-affyio): New variable.
* gnu: Add r-mzr.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-mzr): New variable.
* gnu: Add r-protgenerics.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-protgenerics): New variable.
* gnu: Add r-maldiquant.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-maldiquant): New variable.
* gnu: Add r-raremetals2.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-raremetals2): New variable.
* gnu: Add r-seqminer.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-seqminer): New variable.
* gnu: Add r-compquadform.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/statistics.scm (r-compquadform): New variable.
* gnu: Add ribodiff.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (ribodiff): New variable.
* gnu: Add hisat2.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (hisat2): New variable.
* gnu: Add r-fivethirtyeight.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
* gnu: powertabeditor: Update to 2.0.0-alpha9.Ricardo Wurmus2017-01-17
| | | | | | * gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha9. [source]: Simplify snippet. [arguments]: Adjust phases; remove unnecessary configure flag.
* Revert "gnu: cups-filters: Disable mutool integration."Leo Famulari2017-01-17
| | | | | | | This change would cause 594 packages to be rebuilt, so it was moved to the staging branch. This reverts commit 58a7bbc5fe52f20910fb0fe7fddb9012f2049034.
* gnu: webkitgtk: Update to 2.14.3 [security fixes].Leo Famulari2017-01-17
| | | | | | Fixes CVE-2016-{7586,7589,7592,7599,7623,7632,7635,7639,7641,7645,7652,7654,7656}. * gnu/packages/webkit.scm (webkitgtk): Update to 2.14.3.
* gnu: cups-filters: Disable mutool integration.Tobias Geerinckx-Rice2017-01-17
| | | | | | * gnu/packages/cups.scm (cups-filters)[arguments]: Add ‘--disable-mutool’ to #:configure-flags. [inputs]: Remove mupdf.
* gnu: libpsl: Update to 0.17.0.Tobias Geerinckx-Rice2017-01-17
| | | | * gnu/packages/web.scm (libpsl): Update to 0.17.0.
* gnu: proxychains-ng: Update to 4.12.Tobias Geerinckx-Rice2017-01-17
| | | | * gnu/packages/networking.scm (proxychains-ng): Update to 4.12.
* gnu: password-store: Install bash completions.Marius Bakke2017-01-17
| | | | | * gnu/packages/password-utils.scm (password-store)[arguments]: Add 'install-shell-completions' phase.
* gnu: gnucash: Update to 2.6.15.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/gnucash.scm (gnucash): Update to 2.6.15.
* gnu: Add proj.4.Björn Höfling2017-01-17
| | | | | | | * gnu/packages/geo.scm (proj.4): New variable. (gnome-maps): Use license: prefix. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: xscreensaver: Update to 5.36.Marius Bakke2017-01-17
| | | | * gnu/packages/xdisorg.scm (xscreensaver): Update to 5.36.
* gnu: perl-image-exiftool: Update to 10.40.Leo Famulari2017-01-17
| | | | | * gnu/packages/photo.scm (perl-image-exiftool): Update to 10.40. [synopsis, description]: Mention more capabilities.
* gnu: ghc-quickcheck-instances: Update to 0.3.12.Ricardo Wurmus2017-01-17
| | | | | * gnu/packages/haskell.scm (ghc-quickcheck-instances): Update to 0.3.12. [inputs]: Add ghc-scientific and ghc-vector.
* gnu: imagemagick: Update to 6.9.7-4 [security fixes].Leo Famulari2017-01-16
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-4.
* gnu: Add scrypt.Leo Famulari2017-01-16
| | | | * gnu/packages/crypto.scm (scrypt): New variable.
* gnu: Add emacs-stripe-buffer.Ricardo Wurmus2017-01-16
| | | | * gnu/packages/emacs.scm (emacs-stripe-buffer): New variable.
* gnu: Add emacs-git-timemachine.Ricardo Wurmus2017-01-16
| | | | * gnu/packages/emacs.scm (emacs-git-timemachine): New variable.
* gnu: guile-sqlite3: Provide a new source URL.Ludovic Courtès2017-01-16
| | | | * gnu/packages/guile.scm (guile-sqlite3)[home-page]: Change.
* file-systems: 'file-system-needed-for-boot?' is #t for parents of the store.Ludovic Courtès2017-01-16
| | | | | | | | | | | | Suggested by John Darrington <john@darrington.wattle.id.au>. * gnu/system/file-systems.scm (%not-slash): New variable. (file-prefix?): New procedure. (file-system-needed-for-boot?): Use it to check whether FS holds the store. * tests/file-systems.scm ("file-system-needed-for-boot?"): New test. * gnu/tests/install.scm (%separate-store-os)[file-systems]: Remove 'needed-for-boot?' field for "/gnu".
* gnu: Add r-centipede.Ricardo Wurmus2017-01-16
| | | | * gnu/packages/bioinformatics.scm (r-centipede): New variable.
* gnu: Add ocaml-lwt.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-lwt): New variable.
* gnu: Add ocaml-ssl.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-ssl): New variable.
* gnu: Add ocaml-react.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-react): New variable.
* gnu: Add ocaml-ppx-tools.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-ppx-tools): New variable.
* gnu: Add ocaml-alcotest.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-alcotest): New variable.
* gnu: Add ocaml-astring.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-astring): New variable.
* gnu: Add ocaml-fmt.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-fmt): New variable.
* gnu: camlzip: Install both modules.Julien Lepiller2017-01-16
| | | | | * gnu/packages/ocaml.scm (camlzip) [arguments]: Install both zip and camlzip modules.
* gnu: Add python-autopep8.Thomas Danckaert2017-01-16
| | | | | | * gnu/packages/python.scm (python-autopep8, python2-autopep8): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: kdevelop: Set more paths in wrapper script.Thomas Danckaert2017-01-16
| | | | | | | | * gnu/packages/kde.scm (kdevelop)[arguments]: Add more paths in wrap-executable: add "/share" output of kdevplatform and kcmutils to $XDG_DATA_DIRS; add "lib/plugins" from user profile to $QT_PLUGIN_PATH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: kdevelop: Update to 5.0.3.Thomas Danckaert2017-01-16
| | | | | | * gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.0.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* grafts: Preserve the cache across recursive calls.Ludovic Courtès2017-01-16
| | | | | | | | | | | Before this commit, we'd lose the cache across recursive calls to 'cumulative-grafts', which isn't great performance-wise. This bug was already present before d38bc9a9f6feefc465964531520fee5663a12f48. * guix/grafts.scm (with-cache): In the miss case, call 'current-state' after EXP has been evaluated.
* grafts: Actually cache grafts during the derivation DAG traversal.Ludovic Courtès2017-01-16
| | | | | | | | | | | This fixes a regression introduced in d38bc9a9f6feefc465964531520fee5663a12f48 whereby the cache was effectively disabled. Reported by Thomas Danckaert <thomas.danckaert@gmail.com>. * guix/grafts.scm (with-cache): In the cache miss case, wrap body in 'mbegin'.
* gnu: linux-libre: Update to 4.9.4.Mark H Weaver2017-01-16
| | | | | * gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.9.4.
* gnu: linux-libre@4.4: Update to 4.4.43.Mark H Weaver2017-01-16
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.43.
* gnu: dwm: Add '.desktop' file.ng02017-01-16
| | | | | | | | | Fixes <https://bugs.gnu.org/25438>. * gnu/packages/suckless.scm (dwm)[arguments]: Add 'install-xsession' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dwm: Use modify-phases.ng02017-01-16
| | | | | | * gnu/packages/suckless.scm (dwm): Use modify-phases. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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