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* gnu: edirect: Install more programs.Efraim Flashner2020-03-22
| | | | | | | | | * gnu/packages/bioinformatics.scm (edirect)[arguments]: Add 'patch-programs phase to work around not finding binaries in the PATH. Rewrite 'install phase to install many more scripts. Rewrite 'wrap-program to wrap more scripts with more programs. [inputs]: Add edirect-go-programs. [native-search-paths]: New field.
* gnu: Add edirect-go-programs.Efraim Flashner2020-03-22
| | | | | * gnu/packages/bioinformatics.scm (edirect-go-programs): New variable. (edirect)[source]: Adjust snippet to not use non-free software.
* gnu: Add go-github-com-surgebase-porter2.Efraim Flashner2020-03-22
| | | | * gnu/packages/golang.scm (go-github-com-surgebase-porter2): New variable.
* gnu: Add go-github-com-surge-glog.Efraim Flashner2020-03-22
| | | | * gnu/packages/golang.scm (go-github-com-surge-glog): New variable.
* gnu: Add go-github-com-pbnjay-memory.Efraim Flashner2020-03-22
| | | | * gnu/packages/golang.scm (go-github-com-pbnjay-memory): New variable.
* gnu: Add go-github-com-klauspost-cpuid.Efraim Flashner2020-03-22
| | | | * gnu/packages/golang.scm (go-github-com-klauspost-cpuid): New variable.
* gnu: Add go-github-com-gedex-inflector.Efraim Flashner2020-03-22
| | | | * gnu/packages/golang.scm (go-github-com-gedex-inflector): New variable.
* gnu: Add go-github-com-fogleman-gg.Efraim Flashner2020-03-22
| | | | * gnu/packages/golang.scm (go-github-com-fogleman-gg): New variable.
* gnu: Add go-github-com-golang-freetype.Efraim Flashner2020-03-22
| | | | * gnu/packages/golang.scm (go-github-com-golang-freetype): New variable.
* gnu: Add go-golang-org-rainycape-unidecode.Efraim Flashner2020-03-22
| | | | * gnu/packages/golang.scm (go-golang-org-rainycape-unidecode): New variable.
* gnu: Add go-golang-org-x-image.Efraim Flashner2020-03-22
| | | | * gnu/packages/golang.scm (go-golang-org-x-image): New variable.
* services: Add fontconfig-file-system-service.Efraim Flashner2020-03-22
| | | | | | * gnu/services/desktop.scm (%fontconfig-file-system, fontconfig-file-system-service): New variables. (%desktop-services): Add fontconfig-file-system-service.
* gnu: cutter: Update to 1.10.1.pinoaffe@airmail.cc2020-03-22
| | | | | | * gnu/packages/engineering.scm (cutter): Update to 1.10.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: radare2: Update to 4.2.1.pinoaffe@airmail.cc2020-03-22
| | | | | | * gnu/packages/engineering.scm (radare2): Update to 4.2.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: clipmenu: Improve the package definitionDamien Cassou2020-03-22
| | | | | | | | * gnu/packages/xdisorg.scm (clipmenu): Add the package's unit-tests to the check phase. Wrap the program so the PATH contains all dependencies. The previous approach to patch the script was incomplete and more complex. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: clipnotify: Comment on the lack of a test suite.Damien Cassou2020-03-22
| | | | | | * gnu/packages/xdisorg.scm (clipnotify): Add a comment Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: clipmenu: Re-indent.Damien Cassou2020-03-22
| | | | | | * gnu/packages/xdisorg.scm (clipmenu): Re-indent Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* guix-install.sh: /etc/profile.d/guix.sh sources ~/.guix-profile/etc/profile.Ludovic Courtès2020-03-22
| | | | | | * etc/guix-install.sh (sys_create_init_profile): Source ~/.guix-profile/etc/profile instead of running 'guix package --search-paths=prefix'
* guix-install.sh: Add a trailing colon to 'INFOPATH'.Ludovic Courtès2020-03-22
| | | | | | | | Fixes <https://bugs.gnu.org/39984>. Suggested by Adam Porter <adam@alphapapa.net>. * etc/guix-install.sh (sys_create_init_profile): Add a trailing colon to 'INFOPATH'.
* download: Delete the output file upon failure.Ludovic Courtès2020-03-22
| | | | | | | | | | This allows ENOSPC conditions to be properly reported as such rather than as a hash mismatch due to the availability of a truncated file. Fixes <https://bugs.gnu.org/39993>. Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>. * guix/build/download.scm (url-fetch): In the failure case, delete FILE.
* gnu: Add dragonfly-reverbAlexandros Theodotou2020-03-21
| | | | * gnu/packages/music.scm (dragonfly-reverb): New variable.
* gnu: linux-libre: Update to 5.4.27.Mark H Weaver2020-03-21
| | | | | * gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.27. (linux-libre-5.4-pristine-source): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.112.Mark H Weaver2020-03-21
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.112. (linux-libre-4.19-pristine-source): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.174.Mark H Weaver2020-03-21
| | | | | * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.174. (linux-libre-4.14-pristine-source): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.217.Mark H Weaver2020-03-21
| | | | | * gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.217. (linux-libre-4.9-pristine-source): Update hash.
* gnu: linux-libre@4.4: Update to 4.4.217.Mark H Weaver2020-03-21
| | | | | * gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.217. (linux-libre-4.4-pristine-source): Update hash.
* gnu: ghc-stylish-haskell: Deprecate older duplicate package.John Soo2020-03-21
| | | | | | * gnu/packages/haskell-xyz.scm (ghc-stylish-haskell): Deprecate it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: stylish-haskell: Update description.John Soo2020-03-21
| | | | | | * gnu/packages/haskell-apps.scm (stylish-haskell): Update description. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add r-oai.Wiktor Żelazny2020-03-21
| | | | | | * gnu/packages/cran.scm (r-oai): new variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add r-latex2exp.Wiktor Żelazny2020-03-21
| | | | | | * gnu/packages/cran.scm (r-latex2exp): new variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add r-httpcode.Wiktor Żelazny2020-03-21
| | | | | | * gnu/packages/cran.scm (r-httpcode): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: global: Add 'python-wrapper' as input.wednesday2020-03-21
| | | | | * gnu/packages/code.scm (global)[inputs]: Add 'python-wrapper' to fix tagging python code.
* Revert "gnu: Remove qemu-minimal@2.10."Marius Bakke2020-03-21
| | | | | | This package was still in use by american-fuzzy-lop. This reverts commit 559f37328851fc1ae1d90f27fab7beff3d804421.
* gnu: gpgme: Fix build.Tobias Geerinckx-Rice2020-03-21
| | | | | | Reported by joshuaBPMan on #guix. * gnu/packages/gnupg.scm (gpgme)[arguments]: Add ‘disable-failing-test’ phase.
* gnu: python-pygraphviz: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | * gnu/packages/graphviz.scm (python-pygraphviz)[home-page]: Use HTTPS.
* gnu: python-tables: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | * gnu/packages/python-xyz.scm (python-tables)[home-page]: Use HTTPS.
* gnu: python-future: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | * gnu/packages/python-xyz.scm (python-future)[home-page]: Use HTTPS.
* gnu: python-scrypt: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | * gnu/packages/python-crypto.scm (python-scrypt)[home-page]: Use HTTPS.
* gnu: python-scikit-learn: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | * gnu/packages/machine-learning.scm (python-scikit-learn)[home-page]: Use HTTPS.
* gnu: python2-pyro: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | * gnu/packages/python-xyz.scm (python2-pyro)[home-page]: Use HTTPS.
* gnu: python2-element-tree: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | * gnu/packages/python-xyz.scm (python2-element-tree)[home-page]: Use HTTPS.
* gnu: python-cheetah: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | * gnu/packages/python-xyz.scm (python-cheetah)[home-page]: Use HTTPS.
* gnu: python-kivy: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | * gnu/packages/python-xyz.scm (python-kivy)[home-page]: Use HTTPS.
* gnu: Add gnome-shell-extension-topicons-redux.Ekaitz Zarraga2020-03-21
| | | | | | | * gnu/packages/gnome-xyz.scm (gnome-shell-extension-topicons-redux): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: ghc-extra: Downgrade to 1.6.21.Alexandru-Sergiu Marton2020-03-21
| | | | | | * gnu/packages/haskell-xyz.scm (ghc-extra): Downgrade to 1.6.21. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Remove qemu-minimal@2.10.Marius Bakke2020-03-21
| | | | * gnu/packages/virtualization.scm (qemu-minimal-2.10): Remove variable.
* gnu: Remove flex@2.6.1.Marius Bakke2020-03-21
| | | | * gnu/packages/flex.scm (flex-2.6.1): Remove variable.
* gnu: GRUB: Use the latest version of QEMU for tests.Marius Bakke2020-03-21
| | | | | * gnu/packages/bootloaders.scm (grub)[native-inputs]: Change from QEMU-MINIMAL-2.10 to QEMU-MINIMAL.
* gnu: GRUB: Build with the latest version of Flex.Marius Bakke2020-03-21
| | | | | * gnu/packages/bootloaders.scm (grub)[native-inputs]: Change from FLEX-2.6.1 to FLEX.
* gnu: python-grpcio: Update to 1.27.2.Marius Bakke2020-03-21
| | | | | | | * gnu/packages/rpc.scm (python-grpcio): Update to 1.27.2. [source](modules, snippet): New fields. [arguments]: Add phases to use system libraries and the correct compiler. [inputs]: Add C-ARES, OPENSSL, and ZLIB.
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