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* build-system/{cmake,glib-or-gtk}: Add #:validate-runpath? parameter.Ludovic Courtès2015-04-23
| | | | | | * guix/build-system/cmake.scm (cmake-build): Add #:validate-runpath? parameter and pass it to BUILDER. * guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Likewise.
* build-system/gnu: #:validate-runpath? now defaults to #t.Ludovic Courtès2015-04-23
| | | | | * guix/build/gnu-build-system.scm (validate-runpath): Change default value of VALIDATE-RUNPATH? to #t.
* build-system/gnu: Gracefully handle dangling symlinks.Ludovic Courtès2015-04-23
| | | | | | | | | Fixes <http://bugs.gnu.org/20081>. Reported by Tomáš Čech <tcech@suse.cz>. * guix/build/gnu-build-system.scm (patch-source-shebangs): Remove files that don't pass 'file-exists?'. (patch-generated-file-shebangs): Likewise.
* gremlin: Add support for the expansion of $ORIGIN in RUNPATH.Ludovic Courtès2015-04-23
| | | | | | | | * guix/build/gremlin.scm (expand-variable, expand-origin): New procedures. (validate-needed-in-runpath): Map 'expand-origin' to the RUNPATH field of DYNINFO. * tests/gremlin.scm ("expand-origin"): New test.
* gnu: Add missing (gnu packages gettext) module import.Mark H Weaver2015-04-22
| | | | | | This is a followup to 6162b95d21a7b75fe3753c22c7755c5d12a8302f. * gnu/packages/base.scm: Import (gnu packages gettext).
* gnu: gcc: Do not always disable RUNPATH validation.Ludovic Courtès2015-04-23
| | | | | | | | | | * gnu/packages/gcc.scm (gcc-4.7)[arguments]: Remove explicit #:validate-runpath? #f. * gnu/packages/commencement.scm (gcc-boot0)[arguments]: Remove case for #:validate-runpath?. (gcc-final)[arguments]: Add literal #:validate-runpath? #f. * gnu/packages/cross-base.scm (cross-gcc-arguments): Remove case for #:validate-runpath?.
* gnu: gcc: Add a RUNPATH to libstdc++.so so that it finds libgcc_s.so.Ludovic Courtès2015-04-23
| | | | | | | | Fixes <http://bugs.gnu.org/20358>. Reported by 宋文武 <iyzsong@gmail.com>. * gnu/packages/gcc.scm (gcc-4.7)[arguments]: Add 'substitute*' form for "libstdc++-v3/src/Makefile.in".
* gnu: commencement: Remove unneeded configure flag for bootstrap gettext.Ludovic Courtès2015-04-23
| | | | | * gnu/packages/commencement.scm (gettext-boot0): Remove unneeded --disable-threads.
* gnu: perl: Fix Module::Pluggable for symlink forests.Eric Bavier2015-04-22
| | | | | | * gnu/packages/patches/perl-module-pluggable-search.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/perl.scm (perl)[source]: Add patch.
* gnu: tzdata: Update to 2015c.Mark H Weaver2015-04-21
| | | | * gnu/packages/base.scm (tzdata): Update to 2015c.
* gnu: glibc: Add dependency on Gettext, to install the message catalogs.Ludovic Courtès2015-04-21
| | | | | | | | | This fixes a bug whereby the libc.mo files were not installed, and thus translations of libc's messages were not available. * gnu/packages/commencement.scm (gettext-boot0): New variable. (glibc-final)[native-inputs]: New field. * gnu/packages/base.scm (glibc)[native-inputs]: Add GNU-GETTEXT.
* gnu: libltdl: Remove unneeded patch.Ludovic Courtès2015-04-21
| | | | * gnu/packages/autotools.scm (libltdl)[source]: Remove 'patches'.
* gnu: ld-wrapper: Ignore the .so argument following '-dynamic-linker'.Ludovic Courtès2015-04-21
| | | | | | | | Reported at <http://bugs.gnu.org/20102>. * gnu/packages/ld-wrapper.in (library-files-linked): Rename 'path+files' to 'path+files+args'. Thread the reverse list of previous arguments. Add case for when the previous argument is "-dynamic-linker".
* gnu: ld-wrapper: Add debugging info.Ludovic Courtès2015-04-21
| | | | | * gnu/packages/ld-wrapper.in (ld-wrapper): Add "libraries linked" debugging statement.
* gnu: Rename ld-wrapper2 to ld-wrapper.Ludovic Courtès2015-04-21
| | | | | | | | * gnu/packages/ld-wrapper2.in: Rename to... * gnu/packages/ld-wrapper.in: ... this. * gnu-system.am (MISC_DISTRO_FILES): Remove ld-wrapper2.in. * gnu/packages/commencement.scm (fixed-ld-wrapper): Remove. (gcc-toolchain): Restore pre-77db91ad inputs.
* ui: Add 'symlink' replacement with better error reporting.Ludovic Courtès2015-04-20
| | | | * guix/ui.scm (symlink): New procedure.
* system: Make /gnu/store a read-only bind mount by default.Ludovic Courtès2015-04-20
| | | | | | * gnu/system/file-systems.scm (%immutable-store): New variable. (%base-file-systems): Add it. * doc/guix.texi (File Systems): Document it.
* file-systems: Use a second 'mount' call for read-only bind mounts.Ludovic Courtès2015-04-20
| | | | | | | * gnu/build/file-systems.scm (MS_REMOUNT): New constant. (mount-file-system): Add 'flags' local variable. When FLAGS has MS_BIND & MS_RDONLY, call 'mount' with MS_REMOUNT. * gnu/services/base.scm (file-system-service) <start>: Likewise.
* gnu: Remove all #:select from (gnu packages ...) modules.Ludovic Courtès2015-04-20
| | | | | | | | | | | | | This works around Guile bug <http://bugs.gnu.org/15540>. Reported by Andreas Enge <andreas@enge.fr>. * gnu/packages/engineering.scm: Don't #:select from (gnu packages ...). * gnu/packages/gcc.scm: Likewise. * gnu/packages/package-management.scm: Likewise. * gnu/packages/photo.scm: Likewise. * gnu/packages/pulseaudio.scm: Likewise. * gnu/packages/moe.scm: Likewise, and #:select from (guix licenses) instead.
* gexp: Add printers for <gexp-input> and <gexp-output>.Ludovic Courtès2015-04-20
| | | | | * guix/gexp.scm (write-gexp-input, write-gexp-output): New procedures. (<gexp-input>, <gexp-output>): Use them as printers.
* profiles: Create a CA certificate bundle only when it would be non-empty.Ludovic Courtès2015-04-20
| | | | | * guix/profiles.scm (ca-certificate-bundle): Create $output/etc/ssl/certs if and only if CA-FILES is non-empty.
* gnu: Add sra-tools.Ricardo Wurmus2015-04-20
| | | | * gnu/packages/bioinformatics.scm (sra-tools): New variable.
* gnu: Add NCBI VDB.Ricardo Wurmus2015-04-20
| | | | * gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
* gnu: Add NGS Java bindings.Ricardo Wurmus2015-04-20
| | | | * gnu/packages/bioinformatics.scm (ngs-java): New variable.
* gnu: Add NGS SDK.Ricardo Wurmus2015-04-20
| | | | * gnu/packages/bioinformatics.scm (ngs-sdk): New variable.
* gnu: Add Biopython.Ricardo Wurmus2015-04-20
| | | | | * gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New variables.
* gnu: Adjust latest perl modules to new 'modify-phases' syntax.Eric Bavier2015-04-19
| | | | | | | * gnu/packages/compression.scm (perl-compress-raw-zlib)[arguments]: Add missing quotes, as needed since commit f8503e2. * gnu/packages/perl.scm (perl-ipc-run)[arguments]: Likewise. * gnu/packages/xml.scm (perl-xml-sax)[arguments]: Likewise.
* gnu: Add WebKitGTK+.宋文武2015-04-20
| | | | | * gnu/packages/webkit.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu: Add JSON-Any.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-json-any): New variable.
* import: cpan: Fix license string for Artistic license.Eric Bavier2015-04-19
| | | | | * guix/import/cpan.scm (string->license): Remove extraneous "_0" suffix for Artistics licenses.
* gnu: nix: Propagate perl inputs.Eric Bavier2015-04-19
| | | | | | * gnu/packages/package-management.scm (nix)[inputs]: Move perl-www-curl, perl-dbi, perl-dbd-sqlite to... [propagated-inputs]: ...this new field
* gnu: Add Sys-Hostname-Long.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-sys-hostname-long): New variable.
* gnu: Add Text-Table.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-text-table): New variable.
* gnu: Add Text-Aligner.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-text-aligner): New variable.
* gnu: Add Set-Scalar.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-set-scalar): New variable.
* gnu: Add SQL-SplitStatement.Eric Bavier2015-04-19
| | | | * gnu/packages/databases.scm (perl-sql-splitstatement): New variable.
* gnu: Add SQL-Tokenizer.Eric Bavier2015-04-19
| | | | * gnu/packages/databases.scm (perl-sql-tokenizer): New variable.
* gnu: Add Perl Readonly.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-readonly): New variable.
* gnu: Add Perl Net-Amazon-S3.Eric Bavier2015-04-19
| | | | | | * gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/web.scm (perl-net-amazon-s3): New variable.
* gnu: Add XML-LibXML.Eric Bavier2015-04-19
| | | | * gnu/packages/xml.scm (perl-xml-libxml): New variable.
* gnu: Add XML-SAX;Eric Bavier2015-04-19
| | | | * gnu/packages/xml.scm (perl-xml-sax): New variable.
* gnu: Add XML-SAX-Base.Eric Bavier2015-04-19
| | | | * gnu/packages/xml.scm (perl-xml-sax-base): New variable.
* gnu: Add XML-NamespaceSupport.Eric Bavier2015-04-19
| | | | * gnu/packages/xml.scm (perl-xml-namespacesupport): New variable.
* gnu: Add Term-ProgressBar-Simple.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-term-progressbar-simple): New variable.
* gnu: Add Term-ProgressBar-Quiet.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-term-progressbar-quiet): New variable.
* gnu: Add Test-MockObject.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-test-mockobject): New variable.
* gnu: Add UNIVERSAL-isa.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-universal-isa): New variable.
* gnu: Add UNIVERSAL-can.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-universal-can): New variable.
* gnu: Add Term-ProgressBar.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-term-progressbar): New variable.
* gnu: Add TermReadKey.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-term-readkey): New variable.
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