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* gnu: r-haplo-stats: Update to 1.8.9.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.9.
* gnu: r-adegenet: Update to 2.1.7.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-adegenet): Update to 2.1.7.
* gnu: r-classint: Update to 0.4-7.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-classint): Update to 0.4-7.
* gnu: r-apcluster: Update to 1.4.10.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-apcluster): Update to 1.4.10.
* gnu: r-parallelly: Update to 1.32.0.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-parallelly): Update to 1.32.0.
* gnu: r-rmpfr: Update to 0.8-9.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-rmpfr): Update to 0.8-9.
* gnu: r-sodium: Update to 1.2.1.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-sodium): Update to 1.2.1.
* gnu: r-admisc: Update to 0.28.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-admisc): Update to 0.28.
* gnu: r-rgl: Update to 0.109.2.Ricardo Wurmus2022-06-13
| | | | | | * gnu/packages/cran.scm (r-rgl): Update to 0.109.2. [propagated-inputs]: Add r-base64enc and r-mime. [native-inputs]: Add r-rmarkdown.
* gnu: r-flextable: Update to 0.7.2.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-flextable): Update to 0.7.2.
* gnu: r-officer: Update to 0.4.3.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-officer): Update to 0.4.3.
* gnu: r-rdpack: Update to 2.3.1.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-rdpack): Update to 2.3.1.
* gnu: r-ellipse: Update to 0.4.3.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-ellipse): Update to 0.4.3.
* gnu: r-sna: Update to 2.7.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-sna): Update to 2.7.
* gnu: r-processx: Update to 3.6.0.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-processx): Update to 3.6.0.
* gnu: r-vcd: Update to 1.4-10.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-vcd): Update to 1.4-10.
* gnu: r-ipred: Update to 0.9-13.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-ipred): Update to 0.9-13.
* gnu: r-progressr: Update to 0.10.1.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-progressr): Update to 0.10.1.
* gnu: r-bdsmatrix: Update to 1.3-6.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-bdsmatrix): Update to 1.3-6.
* gnu: r-sp: Update to 1.5-0.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-sp): Update to 1.5-0.
* gnu: r-proxy: Update to 0.4-27.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-proxy): Update to 0.4-27.
* gnu: r-restrserve: Update to 1.2.0.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-restrserve): Update to 1.2.0.
* gnu: r-benchmarkme: Update to 1.0.8.Ricardo Wurmus2022-06-13
| | | | | * gnu/packages/cran.scm (r-benchmarkme): Update to 1.0.8. [propagated-inputs]: Add r-stringr.
* gnu: r-afpt: Update to 1.1.0.2.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/cran.scm (r-afpt): Update to 1.1.0.2.
* gnu: r-nbpseq: Update to 0.3.1.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
* gnu: r-restfulr: Update to 0.0.14.Ricardo Wurmus2022-06-13
| | | | * gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
* gnu: Add js-mathjax-for-r-mathjaxr.Ricardo Wurmus2022-06-13
| | | | | | * gnu/packages/patches/mathjax-3.1.2-no-a11y.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/javascript.scm (js-mathjax-for-r-mathjaxr): New variable.
* gnu: python-asyncssh: Update to 2.11.0.Lars-Dominik Braun2022-06-13
| | | | | | | | | * gnu/packages/ssh.scm (python-asyncssh)[version]: Update to 2.11.0. [propagated-inputs]: Add python-typing-extensions. [native-inputs]: Add python-fido2, python-aiofiles, netcat and python-pytest. [arguments]: Disable netcat autodetection. Replace 'check with call to pytest.
* gnu: Add python-langcodes.Artyom V. Poptsov2022-06-13
| | | | | | * gnu/packages/python-xyz.scm (python-langcodes): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: guix: Generalize extensions.terramorpha2022-06-13
| | | | | | | | | * gnu/services/base.scm (<guix-extension>): New record type. (guix-extension-merge): New procedure. (guix-service-type): Honor extensions. * doc/guix.texi (Base Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: racket: Avoid use of (ice-9 exceptions).Ludovic Courtès2022-06-13
| | | | | | | | | Fixes <https://issues.guix.gnu.org/54546>. Reported by Giovanni Biscuolo <g@xelera.eu> and Michael Chirillo <michael.a.chirillo@gmail.com>. * gnu/packages/racket.scm (racket): Rewrite in terms of SRFI-34/35 instead of (ice-9 exceptions).
* challenge: Actually delete nars that have been extracted.Ludovic Courtès2022-06-13
| | | | | | | | | Fixes <https://issues.guix.gnu.org/55809>. Reported by Vagrant Cascadian <vagrant@reproducible-builds.org>. * guix/scripts/challenge.scm (make-directory-writable): New procedure. (call-with-mismatches)[restore-file*]: New procedure. Use it instead of 'restore-file'.
* gnu: txr: Update to 277.Guillaume Le Vaillant2022-06-13
| | | | | * gnu/packages/lisp.scm (txr): Update to 277. [inputs]: Add zlib.
* Merge branch 'staging'Ludovic Courtès2022-06-13
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| * Merge branch 'master' into stagingLudovic Courtès2022-06-12
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| * \ Merge branch 'master' into stagingLudovic Courtès2022-06-08
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| * | | gnu: timescaledb: Adjust test preparation to PostgreSQL 13.6.Ludovic Courtès2022-06-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The previous method of making a union with symlinks would work with 13.4 but not with 13.6, which has an extra 'canonicalize_path' call in 'find_my_exec'. * gnu/packages/databases.scm (timescaledb)[arguments]: In 'prepare-tests', pass #:symlink argument to 'union-build'.
| * | | gnu: postgresql@10: Fix manual compilation.Ludovic Courtès2022-06-05
| | | | | | | | | | | | | | | | | | | | | | | | This is a followup to f0227a18c2394d3403d0265f3c700cfd9d1ee5b4. * gnu/packages/databases.scm (postgresql-10)[native-inputs]: New field.
| * | | gnu: docbook-sgml: Add 4.2.Ludovic Courtès2022-06-05
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/docbook.scm (docbook-sgml-4.2, docbook-sgml-4.1): New variables. (docbook-sgml): Make an alias to 'docbook-sgml-4.1'.
| * | | gnu: go: Make 'make-go-std' memoizing.Ludovic Courtès2022-06-05
| | | | | | | | | | | | | | | | * gnu/packages/golang.scm (make-go-std): Use 'mlambdaq'.
| * | | gnu: go-std: Make public.Ludovic Courtès2022-06-05
| | | | | | | | | | | | | | | | | | | | * gnu/packages/golang.scm (go-std-1.14, go-std-1.16, go-std-1.17): New variables.
| * | | gnu: ruby-rails-dom-testing: Fix build.Efraim Flashner2022-06-02
| | | | | | | | | | | | | | | | | | | | * gnu/packages/rails.scm (ruby-rails-dom-testing)[arguments]: Add phase to delete the Gemfile.lock.
| * | | gnu: postgresql@11: Depend on docbook-xml@4.2.Ludovic Courtès2022-06-02
| | | | | | | | | | | | | | | | * gnu/packages/databases.scm (postgresql-11)[native-inputs]: New field.
| * | | gnu: setroot: Depend on imlib2@1.7.Ludovic Courtès2022-06-02
| | | | | | | | | | | | | | | | | | | | * gnu/packages/xorg.scm (setroot)[inputs]: Use IMLIB2-1.7 instead of IMLIB2.
| * | | gnu: idesk: Depend on imlib2@1.7.Ludovic Courtès2022-06-02
| | | | | | | | | | | | | | | | | | | | * gnu/packages/wm.scm (idesk)[inputs]: Depend on IMLIB2-1.7 instead of IMLIB2.
| * | | gnu: giblib: Depend on imlib2@1.7.Ludovic Courtès2022-06-02
| | | | | | | | | | | | | | | | | | | | * gnu/packages/image.scm (giblib)[inputs]: Depend on IMLIB2-1.7 instead of IMLIB2.
| * | | gnu: imlib2: Reintroduce 1.7.1.Ludovic Courtès2022-06-02
| | | | | | | | | | | | | | | | * gnu/packages/image.scm (imlib2-1.7): New variable.
| * | | Merge remote-tracking branch 'origin/master' into stagingEfraim Flashner2022-06-01
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| * | | | gnu: python-pyopenssl: Downgrade to 21.0.0.Efraim Flashner2022-05-31
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is a follow-up to 048e05b7ef568dc5e29df774baaf69f7cc5ddaaa. * gnu/packages/python-crypto.scm (python-pyopenssl): Downgrade to 21.0.0. [source]: Add patch used by python2-pyopenssl. [properties]: Remove field. (python2-pyopenssl): Inherit from python-pyopenssl regularly.
| * | | | gnu: python2-cryptography: Update to 3.3.2.Efraim Flashner2022-05-30
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python-crypto.scm (python2-cryptography-vectors, python2-cryptography): Update to 3.3.2.
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