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* gnu: pigx-scrnaseq: Update to 0.0.5.Ricardo Wurmus2018-06-13
| | | | | * gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5. [inputs]: Add python-magic.
* gnu: emacs-orgalist: Update to 1.8.Nicolas Goaziou2018-06-13
| | | | * gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8.
* gnu: emacspeak: Update to 48.0.Kei Kebreau2018-06-13
| | | | | | | | * gnu/packages/emacs.scm (emacspeak): Update to 48.0. [arguments]: Use 'invoke'. In the 'install' phase, add additional installation directories and fix the launch script substitution. [inputs]: Add emacs and perl. [native-inputs]: Remove emacs-minimal.
* nls: Update 'fr' translation.Julien Lepiller2018-06-13
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* gnu: r-factoextra: Fix syntax error.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error.
* gnu: r-seurat: Update to 2.3.2.Ricardo Wurmus2018-06-13
| | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2. [propagated-inputs]: Add r-hdf5r.
* gnu: r-s4vectors: Update to 0.18.3.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
* gnu: r-biocviews: Update to 1.48.1.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
* gnu: r-rjson: Update to 0.2.20.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/web.scm (r-rjson): Update to 0.2.20.
* gnu: r-zoo: Update to 1.8-2.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
* gnu: r-rmarkdown: Update to 1.10.Ricardo Wurmus2018-06-13
| | | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10. [propagated-inputs]: Add r-tinytex.
* gnu: r-highr: Update to 0.7.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/statistics.scm (r-highr): Update to 0.7.
* gnu: r-stringi: Update to 1.2.3.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
* gnu: r-munsell: Update to 0.5.0.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
* gnu: r-rgooglemaps: Update to 1.4.2.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
* gnu: r-reticulate: Update to 1.8.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-reticulate): Update to 1.8.
* gnu: r-later: Update to 0.7.3.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-later): Update to 0.7.3.
* gnu: r-radiant-data: Update to 0.9.5.Ricardo Wurmus2018-06-13
| | | | | | * gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5. [propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang, and r-writexl.
* gnu: r-cubature: Update to 1.3-13.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
* gnu: r-extradistr: Update to 1.8.9.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
* gnu: r-statnet-common: Update to 4.1.2.Ricardo Wurmus2018-06-13
| | | | | * gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2. [propagated-inputs]: Add r-coda.
* gnu: r-stringdist: Update to 0.9.5.1.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
* gnu: r-rcpproll: Update to 0.3.0.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
* gnu: r-extremes: Update to 2.0-9.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
* gnu: r-sp: Update to 1.3-1.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-sp): Update to 1.3-1.
* gnu: r-getoptlong: Update to 0.1.7.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
* gnu: r-circlize: Update to 0.4.4.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
* gnu: r-globaloptions: Update to 0.1.0.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
* gnu: Add r-writexl.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-writexl): New variable.
* gnu: Add r-hdf5r.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-hdf5r): New variable.
* gnu: Add r-nbclust.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-nbclust): New variable.
* gnu: Add r-factoextra.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-factoextra): New variable.
* gnu: Add r-factominer.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-factominer): New variable.
* gnu: Add r-flashclust.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-flashclust): New variable.
* gnu: Add r-ellipse.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-ellipse): New variable.
* gnu: Add r-ggpubr.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-ggpubr): New variable.
* gnu: Add r-ggsignif.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-ggsignif): New variable.
* gnu: Add r-ggsci.Ricardo Wurmus2018-06-13
| | | | * gnu/packages/cran.scm (r-ggsci): New variable.
* gnu: openrct2: Update to 0.2.0.Rutger Helling2018-06-13
| | | | | | | | | | * gnu/packages/games.scm (openrct2-title-sequences): New variable. * gnu/packages/games.scm (openrct2-objects): New variable. * gnu/packages/games.scm (openrct2): Update to 0.2.0. [arguments]: Add phases 'fix-usr-share-path&add-data, 'fix-gcc7 and 'get-rid-of-errors. [inputs]: Add icu4c, openrct2-objects, openrct2-title-sequences. [native-inputs]: Add gcc@7.
* tests: Honor the return value of 'start-service'.Clément Lassieur2018-06-13
| | | | | | | | | | | | | | | | | | | | | | | Since commit dc7b3e56337ee9d8dcd8fe7d5cab71ef536d024f, 'start-service' returns the Shepherd's representation of the service as a sexp, and '#f' if the service fails to start. Also, it doesn't throw an exception when the service fails to start, so relying on an exception instead of relying on its return value is a false positive. * gnu/tests/base.scm (run-nss-mdns-test): Split tests so to check the return value of 'start-service'. (run-mcron-test, run-nss-mdns-test): Use 'test-assert' with the return value of 'start-service'. * gnu/tests/admin.scm (run-tailon-test): Idem. * gnu/tests/dict.scm (run-dicod-test): Idem. * gnu/tests/mail.scm (run-opensmtpd-test, run-exim-test, run-dovecot-test): Idem. * gnu/tests/messaging.scm (run-xmpp-test, run-bitlbee-test): Idem. * gnu/tests/nfs.scm (run-nfs-test): Idem. * gnu/tests/rsync.scm (run-rsync-test): Idem. * gnu/tests/ssh.scm (run-ssh-test): Idem. * gnu/tests/version-control.scm (run-cgit-test, run-git-http-test): Idem. * gnu/tests/web.scm (run-php-fpm-test): Idem.
* gnu: vkquake: Update to 1.00.0.Rutger Helling2018-06-13
| | | | * gnu/packages/games.scm (vkquake): Update to 1.00.0.
* gnu: cheese: Update to 3.28.0.Rutger Helling2018-06-13
| | | | * gnu/packages/gnome.scm (cheese): Update to 3.28.0.
* gnu: openimageio: Update to 1.7.19.Leo Famulari2018-06-13
| | | | * gnu/packages/graphics.scm (openimageio): Update to 1.7.19.
* gnu: tor: Update to 0.3.3.7.Tobias Geerinckx-Rice2018-06-12
| | | | * gnu/packages/tor.scm (tor): Update to 0.3.3.7.
* gnu: Add qtwebglplugin.Hartmut Goebel2018-06-12
| | | | | | * gnu/packages/qt.scm (qtwebglplugin): New variable. Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
* gnu: Add qtwebview.Hartmut Goebel2018-06-12
| | | | * gnu/packages/qt.scm (qtwebview): New variable.
* services: nginx: Support extra content in the http block.Christopher Baines2018-06-12
| | | | | | | | | | | This helpful when adding content to the nginx configuration file, which isn't supported by the record type used for the configuration. For example, like adding proxy_cache_path configuration. * gnu/packages/web.scm (<nginx-configuration>): Add new extra-content field. (nginx-configuration-extra-content): New field accessor. (default-nginx-config): Add support for the extra-content field. * doc/guix.texi (NGINX): Document the new extra-content field.
* gnu: python-llfuse: Update to 1.3.3.Leo Famulari2018-06-12
| | | | * gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.3.3.
* gnu: mes: Update to 0.15.Jan Nieuwenhuizen2018-06-12
| | | | * gnu/packages/mes.scm (mes): Update to 0.15.
* import: utils: Import more dependencies.Oleg Pykhalov2018-06-12
| | | | * guix/import/utils.scm (recursive-import): Import more dependencies.
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