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* publish: Use SRFI-71 instead of SRFI-11.Ludovic Courtès2022-04-14
| | | | | * guix/scripts/publish.scm (make-request-handler): Use 'let' instead of 'let-values'.
* gnu: guile-fibers@1.1: Support cross-compilation.Ludovic Courtès2022-04-14
| | | | | | | | Fixes <https://issues.guix.gnu.org/54793>. Reported by Mathieu Othacehe <othacehe@gnu.org>. * gnu/packages/guile-xyz.scm (guile-fibers-1.1)[arguments]: Add 'support-cross-compilation' phase.
* style: Correctly read dots in pairs and improper lists.Ludovic Courtès2022-04-14
| | | | | | | | | | Until now dots were read as symbols. * guix/scripts/style.scm (read-with-comments)[dot]: New variable. [dot?, reverse/dot]: New procedures. Use 'reverse/dot' instead of 'reverse' when reading lists. * tests/style.scm ("read-with-comments: dot notation") ("((a . 1) (b . 2))", "(a b c . boom)"): New tests.
* gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section.Ricardo Wurmus2022-04-14
| | | | | * gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): Move this variable up to the annotation section.
* gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.Ricardo Wurmus2022-04-14
| | | | | * gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move this variable up to the annotation section.
* gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).Ricardo Wurmus2022-04-14
| | | | | * gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here... * gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
* gnu: r-absseq: Move out of experiments section.Ricardo Wurmus2022-04-14
| | | | | * gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments section.
* gnu: r-abarray: Move out of experiments section.Ricardo Wurmus2022-04-14
| | | | | * gnu/packages/bioconductor.scm (r-abarray): Move definition out of experiments section.
* gnu: r-aneufinder: Move to packages section.Ricardo Wurmus2022-04-14
| | | | | * gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of the section for Bioconductor experiments packages.
* gnu: Add r-absseq.Mădălin Ionel Patrașcu2022-04-14
| | | | | | * gnu/packages/bioconductor.scm (r-absseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-abarray.Mădălin Ionel Patrașcu2022-04-14
| | | | | | * gnu/packages/bioconductor.scm (r-abarray): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-acde.Mădălin Ionel Patrașcu2022-04-14
| | | | | | * gnu/packages/bioconductor.scm (r-acde): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-wppi.Mădălin Ionel Patrașcu2022-04-14
| | | | | | * gnu/packages/bioconductor.scm (r-wppi): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-acme.Mădălin Ionel Patrașcu2022-04-14
| | | | | | * gnu/packages/bioconductor.scm (r-acme): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-acgh.Mădălin Ionel Patrașcu2022-04-14
| | | | | | * gnu/packages/bioconductor.scm (r-acgh): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: libfprint: Fix build, add python for the tests.Attila Lendvai2022-04-14
| | | | | | | * gnu/packages/freedesktop.scm (libfprint)[native-inputs]: Add python-minimal as it's needed by the tests. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-ace.Mădălin Ionel Patrașcu2022-04-14
| | | | | | * gnu/packages/bioconductor.scm (r-ace): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-catalyst: Update description.Mădălin Ionel Patrașcu2022-04-14
| | | | | | | * gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup and clarify a sentence. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-tcgabiolinks: Update to 2.22.4.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
* gnu: r-omnipathr: Update to 3.2.8.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
* gnu: r-bgeedb: Update to 2.20.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
* gnu: r-gviz: Update to 1.38.4.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
* gnu: r-catalyst: Update to 1.18.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
* gnu: r-mscoreutils: Update to 1.6.2.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
* gnu: r-singler: Update to 1.8.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
* gnu: r-s4vectors: Update to 0.32.4.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
* gnu: r-experimenthub: Update to 2.2.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
* gnu: r-universalmotif: Update to 1.12.4.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
* gnu: r-variancepartition: Update to 1.24.1.Ricardo Wurmus2022-04-14
| | | | | * gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1. [propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
* gnu: r-cytolib: Update to 2.6.2.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
* gnu: r-rsubread: Update to 2.8.2.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
* gnu: r-ropls: Update to 1.26.4.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
* gnu: r-birewire: Update to 3.26.5.Ricardo Wurmus2022-04-14
| | | | | * gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5. [propagated-inputs]: Remove r-tsne; add r-rtsne.
* gnu: r-biocfilecache: Update to 2.2.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
* gnu: r-massspecwavelet: Update to 1.60.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
* gnu: r-atacseqqc: Update to 1.18.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
* gnu: r-genomicscores: Update to 2.6.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
* gnu: r-clusterprofiler: Update to 4.2.2.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
* gnu: r-enrichplot: Update to 1.14.2.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
* gnu: r-geoquery: Update to 2.62.2.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
* gnu: r-karyoploter: Update to 1.20.3.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
* gnu: r-destiny: Update to 3.8.1.Ricardo Wurmus2022-04-14
| | | | | * gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1. [native-inputs]: Add r-knitr.
* gnu: r-chippeakanno: Update to 3.28.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.1.
* gnu: r-diffbind: Update to 3.4.11.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.11.
* gnu: r-systempiper: Update to 2.0.8.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.8.
* gnu: r-stringdb: Update to 2.6.5.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-stringdb): Update to 2.6.5.
* gnu: r-slingshot: Update to 2.2.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.1.
* gnu: r-rhdf5: Update to 2.38.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.1.
* gnu: r-regioner: Update to 1.26.1.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.1.
* gnu: r-msnbase: Update to 2.20.4.Ricardo Wurmus2022-04-14
| | | | * gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.4.
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