| Commit message (Collapse) | Author | Age |
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* gnu/packages/linux.scm (proot): Update to 5.2.0-alpha-0.a70023a.
[tests?]: Reinstate tests for the aarch64-linux architecture.
[phases]{patch-sources}: Reinstate the test-ssssssss.c test, fixed upstream.
Set the VERSION Make variable, which is normally derived from invoking git.
Delete the new test-docker.sh test file. Delete the known-to-be-failing
test-cdd39012.sh and test-d92b57ca.sh test files.
{check}: No longer set the PROOT_NO_SECCOMP environment variable as the
upstream issue appears to have been resolved.
[native-inputs]: Use the current coreutils package.
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* gnu/packages/guile-xyz.scm (guile-pipe): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
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* gnu/packages/python-check.scm (python-pytest-exploratory): New variable.
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Without this invoking ‘make clean’ would remove ‘guix-gc.timer’, and ‘make’
would fail with.
make[2]: *** No rule to make target 'etc/guix-gc.timer', needed by 'all-am'. Stop.
* nix/local.mk (nodist_systemdservice_DATA): Remove ‘guix-gc.timer’.
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* gnu/packages/emacs-xyz.scm (emacs-treemacs): Update to 2.9.1.
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* gnu/packages/emacs-xyz.scm (emacs-parseedn): Update to 1.0.4.
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* gnu/packages/emacs-xyz.scm (emacs-parseclj): Update to 1.0.4.
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* gnu/packages/emacs-xyz.scm (emacs-crdt): Update to 0.2.6.
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* gnu/packages/emacs-xyz.scm (emacs-counsel-etags): Update to 1.10.0.
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* gnu/packages/emacs-xyz.scm (emacs-a): Update to 1.0.0.
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* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update description according
to new repository.
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* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.5.
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* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 0.2.
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* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.1.3.
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* gnu/packages/web-browsers.scm (av-98)[properties]: Set ‘upstream-name’.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Previously, when a PyPI package had a “-” followed by one or more digits in
its name, e.g., “AV-98”, the importer would interpret “98” as the version of
the package and thus mistake the “AV-98” package for the “av” package on PyPI.
$ ./pre-inst-env guix refresh av-98
following redirection to `https://pypi.org/pypi/av/json'...
/home/yoctocell/src/guix/gnu/packages/web-browsers.scm:914:13: av-98 would be upgraded from 1.0.1 to 8.0.3
Setting the ‘upstream-name’ property to “AV-98” would solve the problem.
$ ./pre-inst-env guix refresh av-98
/home/yoctocell/src/guix/gnu/packages/web-browsers.scm:914:13: 1.0.1 is already the latest version of av-98
* guix/import/pypi.scm (guix-package->pypi-name): Honor ‘upstream-name’
property.
(make-pypi-sexp): Set ‘upstream-name’ property when appropriate.
* tests/pypi.scm (test-json): Rename to ...
(test-json-1): ... this.
(test-json-2): New variable
("guix-package->pypi-name, honor 'upstream-name'"): New test.
("pypi->guix-package, package name contains \"-\" followed by digits"):
Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-crypto.scm (python-py-bcrypt, python2-py-bcrypt): Remove
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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py-bcrypt is unmaintained and support will be dropped in passlib 1.8. The
recommended option is bcrypt.
* gnu/packages/python-crypto.scm (python-passlib)[propagated-inputs]: Remove
python-py-bcrypt. Add python-bcrypt.
[arguments]<#:phases>: Don't return #t.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-crypto.scm (python2-passlib): Remove variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/version-control.scm (grokmirror): Update to 2.0.11.
[arguments]<#:phases>: Don’t return #t.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Fixes <https://issues.guix.gnu.org/43747>.
* guix/discovery.scm (scheme-modules): Parameterize 'current-warning-port'.
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The 'computed-origin-method' had been introduced to work around
limitations of the 'snippet' mechanism. The procedure was duplicated,
which made it hard to automatically detect packages using it.
* guix/packages.scm (computed-origin-method): Move procedure from...
* gnu/packages/gnuzilla.scm: ...here and...
* gnu/packages/gnuzilla.scm: ...there.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/gnome.scm (komikku): Update to 0.34.0.
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* gnu/packages/python-check.scm (python-pytest-repeat): New variable.
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These four variables are added in the same commit to avoid a cyclic
dependency.
* gnu/packages/julia-xyz.scm (julia-documenter,
julia-documentermarkdown, julia-documentertools): New variables.
(julia-documenter-bootstrap): New hidden variable.
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* gnu/packages/julia-xyz.scm (julia-sass): New variable.
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* gnu/packages/julia-jll.scm (julia-libsass-jll): New variable.
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* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
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* gnu/packages/julia-xyz.scm (julia-pycall): New variable.
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* gnu/packages/julia-xyz.scm (julia-mlstyle): New variable.
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* gnu/packages/julia-xyz.scm (julia-measurements): New variable.
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* gnu/packages/julia-xyz.scm (julia-quadgk): New variable.
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* gnu/packages/bioconductor.scm (r-gdsfmt)[source]: Include beginning-of-line
anchor in substitution regular expression.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.3.
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* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.1.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.2.
[propagated-inputs]: Remove r-rex.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.1.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.2.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.5.
[propagated-inputs]: Remove r-rvcheck; add r-yulab-utils.
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* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.4.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun and r-yulab-utils.
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* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.3.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.4.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.7.
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* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.2.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.4.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.1.
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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.2.
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* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.1.
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