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| * gnu: Add seqPattern.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
| * gnu: Add impute.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-impute): New variable.
| * gnu: Add BSgenome.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
| * gnu: Add plotly.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-plotly): New variable.
| * gnu: Add viridis.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-viridis): New variable.
| * gnu: Add topGO.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-topgo): New variable.
| * gnu: Add matrixStats.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-matrixstats): New variable.
| * gnu: Add R.rsp.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-r-rsp): New variable.
| * gnu: Add R.cache.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-r-cache): New variable.
| * gnu: Add R.utils.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-r-utils): New variable.
| * gnu: Add R.oo.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-r-oo): New variable.
| * gnu: Add R.methodsS3.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-r-methodss3): New variable.
| * gnu: Add base64enc.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-base64enc): New variable.
| * gnu: Add DT.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-dt): New variable.
| * gnu: Add SparseM.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-sparsem): New variable.
| * gnu: Add GO.db.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-go-db): New variable.
| * gnu: Add GenomicFeatures.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
| * gnu: Add rtracklayer.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
| * gnu: Add GenomicAlignments.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
| * gnu: Add SummarizedExperiment.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
| * gnu: Add Rsamtools.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
| * gnu: Add Biostrings.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-biostrings): New variable.
| * gnu: Add BiocParallel.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
| * gnu: Add biomaRt.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-biomart): New variable.
| * gnu: Add AnnotationDbi.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
| * gnu: Add Biobase.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/bioinformatics.scm (r-biobase): New variable.
| * gnu: Add snow.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-snow): New variable.
| * gnu: Add futile.logger.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-futile-logger): New variable.
| * gnu: Add futile.options.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-futile-options): New variable.
| * gnu: Add lambda.r.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-lambda-r): New variable.
| * gnu: Add r-xml.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-xml): New variable.
| * gnu: Add RCurl.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-rcurl): New variable.
| * gnu: Add RSQLite.Ricardo Wurmus2016-01-07
| | | | | | | | * gnu/packages/statistics.scm (r-rsqlite): New variable.
| * import: Rename "cran-fetch" to "fetch-description".Ricardo Wurmus2016-01-07
| | | | | | | | | | * guix/import/cran.scm (cran-fetch): Rename procedure ... (fetch-description): ... to this.
| * import: Add package->upstream-name procedure.Ricardo Wurmus2016-01-07
| | | | | | | | * guix/import/cran.scm (package->upstream-name): New procedure.
| * gnu: Add xmlstarlet.Raimon Grau2016-01-07
| | | | | | | | * gnu/packages/xml.scm (xmlstarlet): New variable.
| * gnu: zita-convolver: Drop the '-march=native' optimization.宋文武2016-01-07
| | | | | | | | * gnu/packages/audio.scm (zita-convolver)[source]: Add snippet.
| * gnu: zita-resampler: Drop the '-march=native' optimization.宋文武2016-01-07
| | | | | | | | * gnu/packages/audio.scm (zita-resampler)[source]: Add snippet.
| * gnu: Add ruby-ansi.Ben Woodcroft2016-01-07
| | | | | | | | * gnu/packages/ruby.scm (ruby-ansi): New variable.
| * gnu: edirect: Update to 3.50.Ricardo Wurmus2016-01-07
| | | | | | | | | | * gnu/packages/bioinformatics.scm (edirect): Update to 3.50. [native-inputs]: Remove "unzip".
| * gnu: w3m: Enable SSL, disable broken protocols and ciphers.Leo Famulari2016-01-07
| | | | | | | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/16791>. * gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file. * gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file. * gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file. * gnu/packages/w3m.scm (w3m)[source]: Add patches. * gnu-system.am (dist_patch_DATA): Add the new files.
| * gnu: w3m: Update patch to use '-p1'.Leo Famulari2016-01-07
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/w3m-fix-compile.patch: Rename this file... * gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch prefix level to '-p1'. * gnu-system.am (dist_patch_DATA): Update patch name. * gnu/packages/w3m.scm (w3m)[source]: Update patch name. [source]: Drop patch flag -p0.
| * build-system/gnu: Make 'package-with-explicit-inputs' idempotent.Ludovic Courtès2016-01-06
| | | | | | | | | | | | | | * guix/build-system/gnu.scm (package-with-explicit-inputs): Use 'ensure-keyword-arguments' instead of appending to ARGS. * gnu/packages/commencement.scm (static-bash-for-glibc): Add missing #:guile argument.
| * utils: Add 'ensure-keyword-arguments'.Ludovic Courtès2016-01-06
| | | | | | | | | | * guix/utils.scm (delkw, ensure-keyword-arguments): New procedures. * tests/utils.scm ("ensure-keyword-arguments"): New test.
| * http-client: Work around <http://bugs.gnu.org/22273>.Ludovic Courtès2016-01-06
| | | | | | | | * guix/http-client.scm (read-header-line): New procedure. Use it.
| * gnu: guix: Update development snapshot to f888c0b.Ludovic Courtès2016-01-06
| | | | | | | | * gnu/packages/package-management.scm (guix-devel): Update to f888c0b.
| * http-client: Fix erroneous comment.Ludovic Courtès2016-01-06
| | | | | | | | | | * guix/http-client.scm: Fix Guile version number in comment for Guile commit 5a10e41.
| * gnu: gmsh: Update to 2.11.0.Eric Bavier2016-01-06
| | | | | | | | | | * gnu/packages/maths.scm (gmsh): Update to 2.11.0. [arguments]: Replace 'check phase.
| * lint: cve: Catch host name lookup errors.Ludovic Courtès2016-01-06
| | | | | | | | | | * guix/scripts/lint.scm (package-vulnerabilities): Catch 'getaddrinfo-error'.
| * gnu: sudo: Use /var/run/sudo instead of /run/sudo.Ludovic Courtès2016-01-06
| | | | | | | | | | | | * gnu/packages/admin.scm (sudo)[arguments]: Pass --with-rundir=/var/run/sudo since /var/run is cleaned up at boot time on GuixSD whereas /run is not.
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