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* gnu: python-pynndescent: Update to 0.5.6.Maxim Cournoyer2022-05-12
| | | | | | * gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6. [phases]{check}: Skip the test_weighted_minkowski test. [native-inputs, propagated-inputs]: Re-indent.
* gnu: python-scikit-learn: Parallelize build and test suite.Maxim Cournoyer2022-05-12
| | | | | | | | * gnu/packages/machine-learning.scm (python-scikit-learn) [phases]{configure}: New phase. {build-ext}: Add '-j' option. {check}: Add '-n' option. [native-inputs]: Add python-pytest-xdist.
* gnu: python-pandas: Update to 1.4.2.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-science.scm (python-pandas): Update to 1.4.2.
* gnu: python-pandas: Build and run tests in parallel.Maxim Cournoyer2022-05-12
| | | | | | | * gnu/packages/python-science.scm (python-pandas) [phases]{enable-parallel-build}: New phase. {check}: Add xdist -n option. Skip test_memory_usage test. [native-inputs]: Add python-pytest-xdist.
* gnu: python-numba: Update to 0.55.1.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-numba): Update to 0.55.1.
* gnu: python-llvmlite: Update to 0.38.0.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/llvm.scm (python-llvmlite): Update to 0.38.0.
* gnu: python-numpy: Update to 1.21.6 and parallelize build/tests.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-numpy): Update to 1.21.6. Move inputs and native-inputs fields after arguments. Use gexps. [modules]: New argument. [phases]{parallelize-build}: New phase. {configure-blas}: Format via (ice-9 format). {fix-executable-paths}: Use search-file-input. Remove obsolete system_info.py substitution. {check}: Remove extraneous add-installed-pythonpath and setenv calls. Provide the '-n' pytest-xdist option. [native-inputs]: Use python-hypothesis-next. (python-numpy-next): Inherit from python-numpy. (python2-numpy): Adjust for gexps. [phases]{delete-failing-test}: Rename to... {delete-failing-tests}: ... this. (python2-numpy-1.8): Likewise, and delete 'delete-failing-tests' phase. Disable tests. [native-inputs]: Define as the empty list.
* gnu: python-hypothesis-6.23: Update to 6.43.3.Maxim Cournoyer2022-05-12
| | | | | | | | | | * gnu/packages/check.scm (python-hypothesis-6.23): Update to 6.43.3 and rename to... (python-hypothesis-next): ... this. [propagated-inputs]: Add python-pytest. * gnu/packages/matrix.scm (python-matrix-nio): Adjust accordingly. * gnu/packages/python-web.scm (python-h2): Likewise. * gnu/packages/check.scm (python-hypothesis)[home-page]: Update URL.
* gnu: Add python-jupyterlab-server.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/jupyter.scm (python-jupyterlab-server): New variable.
* gnu: Add python-openapi-core.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-web.scm (python-openapi-core): New variable.
* gnu: Add python-dictpath.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-dictpath): New variable.
* gnu: python-falcon: Update to 3.1.0.Maxim Cournoyer2022-05-12
| | | | | | | | | | * gnu/packages/python-web.scm (python-falcon): Update to 3.1.0. [source]: Use git. Adjust snippet. [phases]{check}: Set HOME and invoke pytests with "-vv". [native-inputs]: Add python-aiofiles, python-cbor2, python-fakeredis, python-httpx, python-pecan, python-pillow, python-pytest-asyncio and python-websockets. [synopsis, description]: Fix indentation.
* gnu: python-fakeredis: Update to 1.7.1.Maxim Cournoyer2022-05-12
| | | | | * gnu/packages/databases.scm (python-fakeredis): Update to 1.7.1. [propagated-inputs]: Add python-aioredis.
* gnu: Add python-aioredis.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/databases.scm (python-aioredis): New variable.
* gnu: Add python-pecan.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-web.scm (python-pecan): New variable.
* gnu: python-sqlalchemy: Update to 1.4.35.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.35.
* gnu: python-sqlalchemy: Run tests in parallel via xdist.Maxim Cournoyer2022-05-12
| | | | | | * gnu/packages/databases.scm (python-sqlalchemy)[phases]: Use gexps. {check}: Run tests in parallel; skip slow test_memusage. * gnu/packages/databases.scm (python2-sqlalchemy): Adjust to avoid xdist.
* gnu: Add python-socksio.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-web.scm (python-socksio): New variable.
* gnu: python-uvicorn: Update to 0.17.6.Maxim Cournoyer2022-05-12
| | | | | | | | | * gnu/packages/python-web.scm (python-uvicorn): Update to 0.17.6. [phases]{check}: Delete extraneous add-installed-pythonpath and inputs/outputs arguments. Add the '-o' 'asyncio_mode=auto' option to pytest invocation, and skip two tests. [native-inputs]: Add python-httpx-bootstrap and python-pytest-asyncio. [propagated-inputs]: Add python-asgiref and python-dotenv.
* gnu: python-httpx: Update to 0.22.0.Maxim Cournoyer2022-05-12
| | | | | | | | | | * gnu/packages/python-web.scm (python-httpx): Update to 0.22.0. [phases]{check}: Add 'asyncio_mode=auto' pytest-asyncio option. Skip the 'test_main' test. [native-inputs]: Delete python-autoflake, python-black, python-cryptography, python-flake8, python-flake8-bugbear, python-flake8-pie, python-isort, python-mypy and python-pytest-cov. [propagated-inputs]: Add python-charset-normalizer.
* gnu: Add python-httpx-bootstrap.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-web.scm (python-httpx-bootstrap): New variable.
* gnu: Add python-httpcore-bootstrap.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-web.scm (python-httpcore-bootstrap): New variable.
* gnu: python-httpcore: Update to 0.14.7 and enable tests.Maxim Cournoyer2022-05-12
| | | | | | | | | | | * gnu/packages/python-web.scm (python-httpcore): Update to 0.14.7. [tests?]: Delete argument. [phases]{check}: Streamline and delete coverage related pytest options. Strip trailing #t. [native-inputs]: Delete python-autoflake, python-flake8, python-flake8-bugbear, python-flake8-pie and python-mypy. Add python-pytest-httpbin. [propagated-inputs]: Add python-anyio, python-certifi and python-socksio.
* gnu: Add python-cbor2.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-web.scm (python-cbor2): New variable.
* gnu: Add python-openapi-spec-validator.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-web.scm (python-openapi-spec-validator): New variable.
* gnu: Add python-openapi-schema-validator.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-web.scm (python-openapi-schema-validator): New variable.
* gnu: Add python-rfc3339-validator.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-rfc3339-validator): New variable.
* gnu: Add python-strict-rfc3339.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-strict-rfc3339): New variable.
* gnu: python-websockets: Update to 10.3 and enable tests.Maxim Cournoyer2022-05-12
| | | | | | * gnu/packages/python-web.scm (python-websockets): Fetch from git. Update to 10.3. [arguments]: Delete field, enabling tests.
* gnu: python-ipython-documentation: Also build info and pdf targets.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | | | * gnu/packages/patches/python-ipython-documentation-chars.patch: New file. * gnu/packages/patches/python-ipython-documentation-repro.patch: Likewise. * gnu/local.mk: Register them. * gnu/packages/python-xyz.scm (python-ipython-documentation) [source]: Apply patches. [arguments]: Use gexps. [phases]{sanitize-sources}: New phase. {configure-sphinx-for-xelatex}: Likewise. {install}: Streamline. Also build and install the PDF and info manual. Enable parallel processing. [inputs]: Delete field. [propagated-inputs]: Remove texlive-updmap.cfg input. Add fontconfig, font-gnu-freefont, graphviz, python-docrepr, texlive-polyglossia, texlive-bin and texlive-xindy.
* gnu: Add texlive-xindy.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/tex.scm (texlive-xindy): New variable.
* gnu: Add texlive-cm-lgc.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/tex.scm (texlive-cm-lgc): New variable.
* gnu: texlive-latex-geometry: Propagate texlive-latex-graphics.Maxim Cournoyer2022-05-12
| | | | | * gnu/packages/tex.scm (texlive-latex-geometry) [propagated-inputs]: Add texlive-latex-graphics.
* download: Add a mirror for CTAN.Maxim Cournoyer2022-05-12
| | | | * guix/download.scm (%mirrors)[ctan]: New entry.
* gnu: Add texlive-cbfonts.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/tex.scm (texlive-cbfonts): New variable.
* gnu: Add texlive-cbfonts-fd.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/tex.scm (texlive-cbfonts-fd): New variable.
* gnu: texlive-polyglossia: Rename and fix package.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | Fixes <https://issues.guix.gnu.org/35780>. * gnu/packages/tex.scm (texlive-latex-polyglossia): Rename to... (texlive-polyglossia): ... this. Inherit from a simple-texlive-package package. [version, source, build-system]: Remove field, now inherited. [outputs]: New field. [arguments]: Add the #:tex-format and #:phases arguments. [native-inputs, propagated-inputs]: New fields. [description]: Expound description. Reported-by: Josh Holland
* gnu: texlive-fontspec: Add missing propagated inputs.Maxim Cournoyer2022-05-12
| | | | | * gnu/packages/tex.scm (texlive-fontspec) [propagated-inputs]: Add texlive-cm and texlive-lm.
* gnu: Add python-sphinx-sitemap.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/sphinx.scm (python-sphinx-sitemap): New variable.
* gnu: Add python-sphinx-theme-builder.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/sphinx.scm (python-sphinx-theme-builder): New variable.
* gnu: Add python-pep621.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/python-xyz.scm (python-pep621): New variable.
* gnu: python-sphinx: Propagate TexLive dependencies.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | | | * gnu/packages/sphinx.scm (python-sphinx): [propagated-inputs]: Add texlive-amsfonts, texlive-amsmath, texlive-capt-of, texlive-carlisle, texlive-etoolbox, texlive-generic-ltxcmds, texlive-hyperref, texlive-latex-base, texlive-latex-cmap, texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap, texlive-latex-float, texlive-latex-framed, texlive-latex-geometry, texlive-latex-graphics, texlive-latex-kvoptions, texlive-latex-needspace, texlive-latex-parskip, texlive-latex-preview, texlive-latex-tabulary, texlive-latex-titlesec, texlive-latex-tools, texlive-latex-upquote, texlive-latex-varwidth, texlive-oberdiek, texlive-stringenc, texlive-wrapfig, texlive-xcolor and texlive-zapfding. [native-inputs]: Remove graphviz, python-mock and python-nose. * gnu/packages/tex.scm (texlive-xcolor): Add TODO comment. * gnu/packages/tex.scm (texlive-hyperref): Likewise.
* gnu: Add python-docrepr.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/documentation.scm (python-docrepr): New variable.
* gnu: Add python-nbdime.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/jupyter.scm (python-nbdime): New variable.
* gnu: python-notebook: Update to 6.4.10.Maxim Cournoyer2022-05-12
| | | | | | * gnu/packages/python-xyz.scm (python-notebook): Update to 6.4.10. [phases]{check}: Remove add-installed-pythonpath. [native-inputs]: python-nest-asyncio.
* gnu: python-send2trash: Update to 1.8.0 and update home page.Maxim Cournoyer2022-05-12
| | | | | | | | | | | * gnu/packages/python-xyz.scm (python-send2trash): Update to 1.8.0. [source]: Update Git URL. [phases]{pre-check}: Set HOME to /tmp directly. {check}: Override phase. [native-inputs]: Add python-pytest. [properties]: Delete field. (python2-send2trash): Delete variable. [home-page]: Update URL.
* gnu: python-nbval: Fix build.Maxim Cournoyer2022-05-12
| | | | | | | * gnu/packages/python-check.scm (python-nbval) [phases]: Delete trailing #t. {check}: Skip newly failing 'test_conf_ignore_stderr' test. Remove INPUTS and OUTPUTS arguments. Add TESTS? and honor it.
* gnu: Add python-jupyter-server-mathjax.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/jupyter.scm (python-jupyter-server-mathjax): New variable.
* gnu: python-nbconvert: Update to 6.5.0.Maxim Cournoyer2022-05-12
| | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-nbconvert): Update to 6.5.0. [arguments]: Use gexps. [phases]{fix-paths-and-tests}: Rename to... {fix-paths}: ... this. Find inputs via search-input-file. Patch inskcape file name. Disable tests in... {check}: ... this phase instead. Do not set HOME. Execute installed test suite. Run tests in parallel. Disable and not test_execute_widgets_from_nbconvert and test_execute_multiple_notebooks tests. [inputs]: Add inkscape. [native-inputs]: Delete python-pytest-cov and python-pytest-dependency. Use new style. [propagated-inputs]: Add python-beautifulsoup4. Reduce the texlive packages part of the generated updmap.cfg input, moving them to regular propagated inputs. Add texlive-unicode-math and texlive-lm-math.
* gnu: Add texlive-lm-math.Maxim Cournoyer2022-05-12
| | | | * gnu/packages/tex.scm (texlive-lm-math): New variable.
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