| Commit message (Collapse) | Author | Age |
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* gnu/packages/qt.scm (qtkeychain): Update to 0.6.2.
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* gnu/packages/web.scm (krona-tools): New variable.
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* gnu/packages/hurd.scm (hurd-headers): Update to version 0.8.
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* gnu/packages/hurd.scm (mig): Update to version 1.7.
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* gnu/packages/hurd.scm (gnumach-headers): Update to version 1.7.
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* gnu/packages/bioinformatics.scm (diamond)[arguments]: Do not
specify target architecture.
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* gnu/packages/bioinformatics.scm (piranha): New variable.
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* gnu/packages/python.scm (python2-pandas)[native-inputs]: Use python2-
versions of python-panda's native-inputs, not of inputs.
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* gnu/packages/crypto.scm (signify): New variable.
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* gnu/packages/networking.scm (libndp): Update to 1.6.
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* gnu/packages/emacs.scm (emacs-zenburn-theme): New variable.
Signed-off-by: Alex Kost <alezost@gmail.com>
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* gnu/packages/patches/gd-CVE-2016-3074.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
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* gnu/packages/gd.scm (gd)[properties]: New field.
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* guix/scripts/lint.scm (package-name->cpe-name): Remove.
(package-vulnerabilities): Honor 'cpe-name' and 'cpe-version'
properties.
* gnu/packages/grub.scm (grub)[properties]: New field.
* gnu/packages/gnuzilla.scm (icecat)[properties]: Add 'cpe-name' and
'cpe-version'.
* doc/guix.texi (Invoking guix lint): Mention 'cpe-name'.
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* gnu/packages/patches/emacs-constants-lisp-like.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove entry for above patch.
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* guix/store.scm (query-path-hash): Clarify docstring.
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Previously, something like 'guix import gnu which' would spit out a
backtrace if, say, the 'which' tarball could not be authenticated.
* guix/upstream.scm (download-tarball): Mention failure modes in
docstring.
* guix/import/gnu.scm (gnu-package->sexp): Return #f when
'download-tarball' returns #f.
* guix/scripts/import.scm (guix-import): Call 'leave' when IMPORTER does
not return a (package ...) sexp.
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* guix/scripts/import.scm (guix-import): Use 'leave' instead of 'format'
when IMPORTER is unknown.
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* gnu/packages/emacs.scm (emacs-constants): Change to versioned repository and
update to 2.6.
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* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1b.
[inputs]: New field.
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* gnu/packages/bioinformatics.scm (vsearch): Update to 1.11.1.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.1.
[source]: Remove 'snippet'.
[build-system]: Use cmake-build-system.
[arguments]: Remove modifications to phases.
[native-inputs]: Remove field.
[inputs]: Remove 'boost'.
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* gnu/packages/emacs.scm (emacs-constants): Move 'home-page' above. Use
it in 'uri'.
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* gnu/packages/emacs.scm (uncompressed-file-fetch): Remove dependency on
GZIP.
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* gnu/packages/code.scm (cflow): Update to 1.5.
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Also, I previously committed to this repository in 2015; add self to copyright
headers for that year too.
* gnu/packages/emacs.scm (geiser-next): New variable.
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* guix/import/cran.scm (latest-bioconductor-release): Wrap Bioconductor
URL in list in the "urls" field of the "upstream-source" value.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.38.0.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.0.
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* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.4.0.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.46.0.
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* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.0.
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* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.24.0.
[propagated-inputs]: Add r-matrixstats.
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* gnu/packages/bioinformatics.scm (r-graph): Update to 1.50.0.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.0.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.0.
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.28.0.
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* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.0.
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* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.32.0.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.0.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.18.0.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.0.
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