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* tests: Exercise 'modify-inputs' with a 'replace' clause.Ludovic Courtès2022-03-16
| | | | | * tests/packages.scm ("modify-inputs, replace") ("modify-inputs, replace, change output"): New tests.
* gnu : nicotine+: Update to 3.2.1.Fatima Toothpaste2022-03-16
| | | | | | | | | | | | * gnu/packages/nicotine.scm (nicotine+): Update to 3.2.1. [source]: Delete network requried tests in snippet. [arguments]: Remove trailing #t. Replae 'check phase to run proper test. [inputs]: Add bash-minimal, gspell, libappindicator. [native-inputs]: Remove python-pytest. Add xvfb-run. [home-page]: Update URL. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* Revert "gnu: %boot3-inputs: Add missing input."Efraim Flashner2022-03-16
| | | | | | This reverts commit ed2ca2dcb558dcda6ea69c64a0a9e9c0b52f892e. This is no longer needed after the gcc STARTFILE_PREFIX_SPEC commit.
* Revert "gnu: Add %final-inputs-riscv64."Efraim Flashner2022-03-16
| | | | | | This reverts commit 0444be868903356a37fc8ffd3cdf820ca038f3e6. This is no longer necessary after the gcc STARTFILE_PREFIX_SPEC commit.
* gnu: gcc: For riscv64-linux remove STARTFILE_PREFIX_SPEC.Efraim Flashner2022-03-16
| | | | | | * gnu/packages/gcc.scm (gcc-4.7)[arguments]: When building for riscv64-linux and the 'gcc/configure/riscv' directory exists adjust the STARTFILE_PREFIX_SPEC so it doesn't do anything.
* gnu: httpie: Update to 3.1.0 [security fixes].kiasoc52022-03-15
| | | | | | | | Fixes CVE-2022-24737 and CVE-2022-0430. * gnu/packages/python-web.scm (httpie): Update to 3.1.0. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add r-diffcyt.zimoun2022-03-15
| | | | * gnu/packages/bioconductor.scm (r-diffcyt): New variable.
* gnu: Add r-ga.zimoun2022-03-15
| | | | * gnu/packages/cran.scm (r-ga): New variable.
* gnu: Add r-carrier.zimoun2022-03-15
| | | | * gnu/packages/cran.scm (r-carrier): New variable.
* gnu: Add r-babelwhale.zimoun2022-03-15
| | | | * gnu/packages/cran.scm (r-babelwhale): New variable.
* gnu: Add r-polychrome.zimoun2022-03-15
| | | | * gnu/packages/cran.scm (r-polychrome): New variable.
* gnu: Add r-scannotatr.zimoun2022-03-15
| | | | * gnu/packages/bioconductor.scm (r-scannotatr): New variable.
* gnu: r-sn: Update to 2.0.2.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/statistics.scm (r-sn): Update to 2.0.2.
* gnu: r-dt: Update to 0.21.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/statistics.scm (r-dt): Update to 0.21.
* gnu: r-simr: Update to 1.0.6.Ricardo Wurmus2022-03-15
| | | | | | | * gnu/packages/statistics.scm (r-simr): Update to 1.0.6. [propagated-inputs]: Add r-lmertest. [synopsis]: Change case and spelling. [description]: Use complete sentences.
* gnu: r-rmarkdown: Update to 2.13.Ricardo Wurmus2022-03-15
| | | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 2.13. [propagated-inputs]: Add r-bslib.
* gnu: r-withr: Update to 2.5.0.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/statistics.scm (r-withr): Update to 2.5.0.
* gnu: r-openssl: Update to 2.0.0.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/statistics.scm (r-openssl): Update to 2.0.0.
* gnu: r-commonmark: Update to 1.8.0.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/statistics.scm (r-commonmark): Update to 1.8.0.
* gnu: r-desc: Update to 1.4.1.Ricardo Wurmus2022-03-15
| | | | | * gnu/packages/statistics.scm (r-desc): Update to 1.4.1. [propagated-inputs]: Remove r-crayon; add r-cli.
* gnu: r-bbmisc: Update to 1.12.Ricardo Wurmus2022-03-15
| | | | | * gnu/packages/statistics.scm (r-bbmisc): Update to 1.12. [propagated-inputs]: Add r-data-table.
* gnu: r-locfit: Update to 1.5-9.5.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.5.
* gnu: r-rlang: Update to 1.0.2.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/statistics.scm (r-rlang): Update to 1.0.2.
* gnu: r-survival: Update to 3.3-1.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/statistics.scm (r-survival): Update to 3.3-1.
* gnu: r-bien: Update to 1.2.5.Ricardo Wurmus2022-03-15
| | | | | * gnu/packages/cran.scm (r-bien): Update to 1.2.5. [native-inputs]: Remove r-testthat.
* gnu: r-filehash: Update to 2.4-3.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-filehash): Update to 2.4-3.
* gnu: r-pdftools: Update to 3.1.1.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-pdftools): Update to 3.1.1.
* gnu: r-mlr3tuning: Update to 0.12.1.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-mlr3tuning): Update to 0.12.1.
* gnu: r-bbotk: Update to 0.5.1.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-bbotk): Update to 0.5.1.
* gnu: r-mlr3: Update to 0.13.3.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-mlr3): Update to 0.13.3.
* gnu: r-parsnip: Update to 0.2.0.Ricardo Wurmus2022-03-15
| | | | | * gnu/packages/cran.scm (r-parsnip): Update to 0.2.0. [propagated-inputs]: Add r-cli, r-ggplot2, and r-withr.
* gnu: r-posterior: Update to 1.2.1.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-posterior): Update to 1.2.1.
* gnu: r-latex2exp: Update to 0.9.4.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-latex2exp): Update to 0.9.4.
* gnu: r-shinystan: Update to 2.6.0.Ricardo Wurmus2022-03-15
| | | | | * gnu/packages/cran.scm (r-shinystan): Update to 2.6.0. [propagated-inputs]: Remove r-rsconnect.
* gnu: r-semplot: Update to 1.1.5.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-semplot): Update to 1.1.5.
* gnu: r-qgraph: Update to 1.9.2.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-qgraph): Update to 1.9.2.
* gnu: r-openmx: Update to 2.20.6.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-openmx): Update to 2.20.6.
* gnu: r-sem: Update to 3.1-14.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-sem): Update to 3.1-14.
* gnu: r-quanteda: Update to 3.2.1.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-quanteda): Update to 3.2.1.
* gnu: r-torch: Update to 0.7.2.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-torch): Update to 0.7.2.
* gnu: r-caret: Update to 6.0-91.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-caret): Update to 6.0-91.
* gnu: r-imager: Update to 0.42.13.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-imager): Update to 0.42.13.
* gnu: r-seewave: Update to 2.2.0.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-seewave): Update to 2.2.0.
* gnu: r-sysfonts: Update to 0.8.8.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-sysfonts): Update to 0.8.8.
* gnu: r-bio3d: Update to 2.4-3.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-bio3d): Update to 2.4-3.
* gnu: r-pracma: Update to 2.3.8.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-pracma): Update to 2.3.8.
* gnu: r-parameters: Update to 0.17.0.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-parameters): Update to 0.17.0.
* gnu: r-styler: Update to 1.7.0.Ricardo Wurmus2022-03-15
| | | | | * gnu/packages/cran.scm (r-styler): Update to 1.7.0. [propagated-inputs]: Remove r-backports, r-glue, and r-xfun.
* gnu: r-mcmcpack: Update to 1.6-1.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-mcmcpack): Update to 1.6-1.
* gnu: r-float: Update to 0.2-6.1.Ricardo Wurmus2022-03-15
| | | | * gnu/packages/cran.scm (r-float): Update to 0.2-6.1.
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