| Commit message (Collapse) | Author | Age |
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* gnu/packages/web.scm (hpcguix-web): Update to 9ff40fc.
[arguments]: In 'wrap-program' phase, add guile-gcrypt, guile-git, and
guile-bytestructures to DEPS.
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* gnu/packages/guile.scm (guile-commonmark)[source](snippet): Change the
"modir = " and "godir = " line separately, allowing .go files to be
installed to $(libdir).
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This is a follow-up to commit 5dfe491290b14a1ee7efd70f9cd083969c24e1c2.
Sorry!
* gnu/packages/bioinformatics.scm, gnu/packages/graph.scm: Use (gnu packages
bioconductor).
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* gnu/packages/ccache.scm (ccache): Update to 3.4.3.
[arguments]: Remove obsolete 'munge-failing-test' phase.
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* gnu/packages/fonts.scm (font-fira-code): Update to 1.205.
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* gnu/packages/mpd.scm (libmpdclient): Update to 2.15.
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Fixes <https://bugs.gnu.org/32618>.
Reported by Eric Brown <brown@fastmail.com>.
* guix/git.scm (update-cached-checkout): Remove "origin/" from default
REF. Define CANONICAL-REF and use it instead of REF.
(latest-repository-commit): Remove "origin/" from default REF.
* guix/channels.scm (%default-channels): Remove "origin/" from
'branch'.
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This fixes a regression introduced in
ca719424455465fca4b872c371daf2a46de88b33 whereby external channels would
fail to build due to the lack of (gcrypt …) modules.
* guix/channels.scm (channel-instance-derivations): Add 'guile-gcrypt'.
Pass it along CORE to 'build-channel-instance'.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
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* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
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* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
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* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
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* gnu/packages/bioinformatics.scm (r-rcas)[native-inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc".
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* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.0.
[propagated-inputs]: Add r-data-table.
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* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-2.
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* gnu/packages/statistics.scm (r-rann): Update to 2.6.
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* gnu/packages/statistics.scm (r-ggthemes): Update to 4.0.1.
[propagated-inputs]: Remove r-assertthat and r-colorspace; add r-purrr,
r-stringr, and r-tibble.
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* gnu/packages/statistics.scm (r-ztable): Update to 0.2.0.
[propagated-inputs]: Add r-flextable, r-magrittr, r-moonbook, r-officer,
r-rcolorbrewer, r-scales, and r-stringr.
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* gnu/packages/statistics.scm (r-zoo): Update to 1.8-3.
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* gnu/packages/statistics.scm (r-gtools): Update to 3.8.1.
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* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-27.
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* gnu/packages/machine-learning.scm (r-adaptivesparsity): Update to 1.6.
[propagated-inputs]: Add r-mass and r-matrix.
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* gnu/packages/cran.scm (r-codedepends): Move from here...
* gnu/packages/bioconductor.scm (r-codedepends): ...to here.
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* gnu/packages/bioinformatics.scm (r-graph): Move from here...
* gnu/packages/bioconductor.scm (r-graph): ...to here.
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* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.8.
[propagated-inputs]: Add r-glue and r-polynom.
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* gnu/packages/cran.scm (r-codedepends): Update to 0.6.5.
[propagated-inputs]: Add r-graph.
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* gnu/packages/cran.scm (r-later): Update to 0.7.4.
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* gnu/packages/cran.scm (r-maptools): Update to 0.9-3.
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* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.1.
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* gnu/packages/cran.scm (r-heatmaply): Update to 0.15.2.
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* gnu/packages/cran.scm (r-tsa): Update to 1.2.
[propagated-inputs]: Remove r-tseries.
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* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.4.
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* gnu/packages/cran.scm (r-metap): Update to 1.0.
[propagated-inputs]: Add r-rdpack.
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* gnu/packages/cran.scm (r-tinytex): Update to 0.8.
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* gnu/packages/cran.scm (r-pillar): Update to 1.3.0.
[propagated-inputs]: Add r-fansi.
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* gnu/packages/cran.scm (r-xts): Update to 0.11-0.
[native-inputs]: Remove.
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* gnu/packages/cran.scm (r-mice): Update to 3.3.0.
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* gnu/packages/cran.scm (r-pan): Update to 1.6.
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* gnu/packages/cran.scm (r-jomo): Update to 2.6-4.
[propagated-inputs]: Add r-ordinal.
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* gnu/packages/cran.scm (r-ordinal): New variable.
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* gnu/packages/cran.scm (r-ucminf): New variable.
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* gnu/packages/cran.scm (r-broom): Update to 0.5.0.
[propagated-inputs]: Add r-backports, r-dplyr, r-purrr, and r-tibble; remove
r-plyr and r-psych.
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* gnu/packages/cran.scm (r-ipred): Update to 0.9-7.
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* gnu/packages/cran.scm (r-pls): Update to 2.7-0.
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* gnu/packages/cran.scm (r-glue): Update to 1.3.0.
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* gnu/packages/cran.scm (r-callr): Update to 3.0.0.
[propagated-inputs]: Add r-base64enc.
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* gnu/packages/cran.scm (r-reprex): Update to 0.2.0.
[propagated-inputs]: Add r-clipr, r-rlang, and r-withr.
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* gnu/packages/cran.scm (r-reticulate): Update to 1.10.
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* gnu/packages/cran.scm (r-doby): Update to 4.6-2.
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* gnu/packages/cran.scm (r-flextable): New variable.
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