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* packages: 'package-with-patches' preserves package location.Ludovic Courtès2021-04-29
| | | | | * guix/packages.scm (package-with-patches): Preserve the 'location' field of ORIGINAL.
* gnu: emacs-hyperbole: Install images and help files.Xinglu Chen2021-04-29
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Include help file and install images for the manual. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: emacs-corfu: Update to 0.4.Xinglu Chen2021-04-29
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.4. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: isc-dhcp: Update bundled BIND to 9.11.31 [security fixes].Leo Famulari2021-04-28
| | | | | | Fixes CVE-2021-{25214,25215,25216]. * gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled BIND to 9.11.31.
* gnu: bind: Update to 9.16.15 [fixes CVE-2021-25214, CVE-2021-25215, ↵Tobias Geerinckx-Rice2021-04-28
| | | | | | CVE-2021-25216]. * gnu/packages/dns.scm (isc-bind): Update to 9.16.15.
* gnu: linux-libre 4.4: Update to 4.4.268.Leo Famulari2021-04-28
| | | | | * gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.268. (linux-libre-4.4-pristine-source): Update hash.
* gnu: linux-libre 4.9: Update to 4.9.268.Leo Famulari2021-04-28
| | | | | * gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.268. (linux-libre-4.9-pristine-source): Update hash.
* gnu: linux-libre 4.14: Update to 4.14.232.Leo Famulari2021-04-28
| | | | | * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.232. (linux-libre-4.14-pristine-source): Update hash.
* gnu: linux-libre 4.19: Update to 4.19.189.Leo Famulari2021-04-28
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.189. (linux-libre-4.19-pristine-source): Update hash.
* gnu: linux-libre 5.4: Update to 5.4.115.Leo Famulari2021-04-28
| | | | | * gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.115. (linux-libre-5.4-pristine-source): Update hash.
* gnu: linux-libre 5.10: Update to 5.10.33.Leo Famulari2021-04-28
| | | | | * gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.33. (linux-libre-5.10-pristine-source): Update hash.
* gnu: linux-libre: Update to 5.11.17.Leo Famulari2021-04-28
| | | | | * gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.17. (linux-libre-5.11-pristine-source): Update hash.
* .guix-authorizations: Remove lle_bout.Marius Bakke2021-04-28
| | | | * .guix-authorizations: Remove lle_bout from the committers.
* gnu: pigx-bsseq: Update to 0.1.3.Ricardo Wurmus2021-04-28
| | | | | * gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.3. [inputs]: Add r-ggbio, r-matrixstats, and r-reshape2.
* gnu: ustr: Don't use vsnprintf.Tobias Geerinckx-Rice2021-04-28
| | | | | | | | This follows up on 1059d1570b7078e6a83e067577b42ed24ee25b55, which caused new tests failures on non-cross builds. * gnu/packages/textutils.scm (ustr)[arguments]: Return "0" for ./autoconf_vsnprintf.
* gnu: giac: Update to 1.7.0-3.Nicolas Goaziou2021-04-28
| | | | * gnu/packages/algebra.scm (giac): Update to 1.7.0-3.
* gnu: python-pikepdf: Update to 2.11.4.Nicolas Goaziou2021-04-28
| | | | * gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.11.4.
* gnu: emacs-auctex: Update to 13.0.10.Nicolas Goaziou2021-04-28
| | | | * gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.10.
* gnu: ustr: Cross-compile.Tobias Geerinckx-Rice2021-04-28
| | | | | | | Also fix <http://issues.guix.gnu.org/48084>. * gnu/packages/text-utils.scm (ustr)[arguments]: Use CC-FOR-TARGET. Add a new 'fix-cross-compilation phase.
* gnu: less: Update to 581.2.Tobias Geerinckx-Rice2021-04-28
| | | | * gnu/packages/less.scm (less): Update to 581.2.
* gnu: iproute2: Update to 5.12.0.Tobias Geerinckx-Rice2021-04-28
| | | | * gnu/packages/linux.scm (iproute2): Update to 5.12.0.
* gnu: folly: Update to 2021.04.26.00.Tobias Geerinckx-Rice2021-04-28
| | | | * gnu/packages/cpp.scm (folly): Update to 2021.04.26.00.
* gnu: xsimd: Update to 7.5.0.Tobias Geerinckx-Rice2021-04-28
| | | | * gnu/packages/cpp.scm (xsimd): Update to 7.5.0.
* gnu: fcitx-qt5: Update to 1.2.6.Tobias Geerinckx-Rice2021-04-28
| | | | * gnu/packages/fcitx.scm (fcitx-qt5): Update to 1.2.6.
* gnu: ungoogled-chromium: Update to 90.0.4430.93.Marius Bakke2021-04-28
| | | | | | | | | | | | | | | | | | | * gnu/packages/patches/ungoogled-chromium-system-nspr.patch, gnu/packages/patches/ungoogled-chromium-system-opus.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 90. (debian-patch): Make REVISION optional, default to %DEBIAN-REVISION. (%chromium-version): New variable. (%ungoogled-revision): Set to 90.0.4430.85-1-11-g3184907. (%debian-revision): Set to debian/90.0.4430.85-1. (%debian-patches): Add more patches; update hashes. (%ungoogled-origin): Update hash. (%guix-patches): Remove obsolete patches. (libvpx/chromium): Update to 1.9.0-147-g61edec1ef. (ungoogled-chromium)[version]: Base on %CHROMIUM-REVISION and the last component of %UNGOOGLED-REVISION, a 'git describe --long' style ID. [arguments]: Add build_with_flite_lib in #:configure-flags. Add openjpeg substitution in #:phases.
* gnu: uBlock Origin: Update to 1.35.0.Marius Bakke2021-04-28
| | | | | * gnu/packages/browser-extensions.scm (uassets): Update to edfb13aae. (ublock-origin): Update to 1.35.0.
* gnu: LLVM, Clang: Add 12.0.0.Marius Bakke2021-04-28
| | | | | | | | * gnu/packages/patches/clang-12-tools-extra-directory.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm-12, clang-runtime-12, clang-12, clang-toolchain-12): New variables. (llvm-11): Inherit from LLVM-12.
* gnu: Add lofreq.Ricardo Wurmus2021-04-28
| | | | * gnu/packages/bioinformatics.scm (lofreq): New variable.
* tests: Add gui-uefi-installed-os test.Mathieu Othacehe2021-04-28
| | | | | | | | | | | | * gnu/installer/tests.scm (conclude-installation): Rename it into ... (start-installation): ... this new procedure. (complete-installation): New procedure. (choose-partitioning): Add an uefi-support? argument. * gnu/tests/install.scm (uefi-firmware): New procedure. (run-install, qemu-command/writable-image, gui-test-program, installation-target-os-for-gui-tests): Add an uefi-support? argument. (%extra-packages): Add grub-efi, fatfsck/static and dosfstools. (%test-gui-installed-os): New variable.
* installer: Add MSDOS disk label support on UEFI systems.Mathieu Othacehe2021-04-28
| | | | | | | | | Fixes: <https://issues.guix.gnu.org/47889>. * gnu/installer/parted.scm (esp-partition?): Remove the MSDOS check. (auto-partition!): On MSDOS disks, check if an ESP partition is present. If that's the case, do not remove it. Otherwise, if UEFI is supported, create one.
* installer: Force GPT disk label when UEFI is supported.Mathieu Othacehe2021-04-28
| | | | | * gnu/installer/newt/partition.scm (run-label-page): Force the GPT disk label when UEFI is supported.
* gnu: kraken2: Replace references to rsync.Ricardo Wurmus2021-04-28
| | | | | | * gnu/packages/bioinformatics.scm (kraken2)[inputs]: Add rsync. [arguments]: Replace references to rsync; use WITH-DIRECTORY-EXCURSION to avoid repeating "scripts".
* gnu: global: Fix cross compiling.Efraim Flashner2021-04-28
| | | | | | | Coreutils was removed during patch review erroneously. Reported by Maxime Devos <maximedevos@telenet.be>. * gnu/packages/code.scm (global)[inputs]: Add coreutils.
* ci: Add custom subset.Mathieu Othacehe2021-04-28
| | | | * gnu/ci.scm (cuirass-jobs): Add 'custom susbset.
* ci: Add arguments->systems procedure.Mathieu Othacehe2021-04-28
| | | | | * gnu/ci.scm (arguments->systems): New procedure. (cuirass-jobs): Use it.
* ci: Factorize image->job procedure.Mathieu Othacehe2021-04-28
| | | | | * gnu/ci.scm (image-jobs): Extract ->job procedure into ... (image->job): ... this new procedure.
* gnu: global: Fix globash.luhui2021-04-28
| | | | | | * gnu/packages/code.scm (global)[arguments]: Add 'fix-globash phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add python-pyliftover.Ricardo Wurmus2021-04-28
| | | | * gnu/packages/bioinformatics.scm (python-pyliftover): New variable.
* gnu: keepassxc: Wrap binary with wrap-qt-program.Efraim Flashner2021-04-28
| | | | | * gnu/packages/password-utils.scm (keepassxc)[arguments]: Import qt-utils module. Replace custom 'wrap-bin phase with 'wrap-qt phase.
* gnu: slurm: Link plugins with libslurm.Ricardo Wurmus2021-04-28
| | | | | | * gnu/packages/parallel.scm (slurm)[arguments]: Add phase patch-plugin-linker-flags to link plugins with libslurm; run autoconf phase after this new phase.
* gnu: krona-tools: Install download scripts.Ricardo Wurmus2021-04-28
| | | | | * gnu/packages/web.scm (krona-tools)[inputs]: Add curl and make. [arguments]: Patch and install update scripts to /share.
* gnu: krona-tools: Update to 2.8.Ricardo Wurmus2021-04-28
| | | | * gnu/packages/web.scm (krona-tools): Update to 2.8.
* Revert "download: Use Disarchive as a last resort."Timothy Sample2021-04-28
| | | | | This reverts commit 66b14dccdd0d83c875ce3a8d50ceab8b6f0a3ce2, which broke 'guix pull'.
* gnu: Add mmc-utils.Leo Famulari2021-04-28
| | | | * gnu/packages/disk.scm (mmc-utils): New variable.
* download: Use Disarchive as a last resort.Timothy Sample2021-04-27
| | | | | | | | | | | | | | | * guix/download.scm (%disarchive-mirrors): New variable. (%disarchive-mirror-file): New variable. (built-in-download): Add 'disarchive-mirrors' keyword argument and pass its value along to the 'builtin:download' derivation. (url-fetch): Pass '%disarchive-mirror-file' to 'built-in-download'. * guix/scripts/perform-download.scm (perform-download): Read Disarchive mirrors from the environment and pass them to 'url-fetch'. * guix/build/download.scm (disarchive-fetch/any): New procedure. (url-fetch): Add 'disarchive-mirrors' keyword argument, use it to make a list of URIs, and use the new procedure to fetch the file if all other methods fail.
* swh: Add a directory download procedure.Timothy Sample2021-04-27
| | | | | | * guix/swh.scm (swh-directory-download): New procedure (with implementation extracted from 'swh-download'). (swh-download): Use it to download the revision directory.
* services: mysql: Add extra-environment as configuration option.methuselah-02021-04-27
| | | | | | | | * gnu/services/databases.scm (mysql-configuration): Add extra-environment (mysql-service): Use #:log-file and #:environment-variables * doc/guix.texi: Document it. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
* gnu: Add gdc-11.Efraim Flashner2021-04-27
| | | | * gnu/packages/gcc.scm (gdc-11): New variable.
* gnu: Add gcc-toolchain-11.Efraim Flashner2021-04-27
| | | | | * gnu/packages/gcc.scm (gcc-11): New variable. * gnu/packages/commencement.scm (gcc-toolchain-11): New variable.
* gnu: lagrange: Update to 1.3.4.Tobias Geerinckx-Rice2021-04-27
| | | | * gnu/packages/web-browsers.scm (lagrange): Update to 1.3.4.
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