| Commit message (Collapse) | Author | Age |
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* guix/import/cran.scm (%bioconductor-version): Export it.
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Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36896>.
* gnu/packages/gnome.scm (evolution)[arguments]: Add a ‘wrap-program’
phase.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
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* gnu/packages/lisp.scm (cl-prevalence, sbcl-cl-prevalence, ecl-cl-prevalence): New variables.
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* gnu/packages/lisp.scm (sbcl-s-sysdeps, cl-s-sysdeps, ecl-s-sysdeps): New variables.
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* gnu/packages/wm.scm (herbstluftwm): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/emacs-xyz.scm (emacs-dumb-jump): Update to 0.5.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/haskell-apps.scm (git-annex): Update 7.20190912.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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git-annex has a mechanism for configuring whether a file is added to the annex
or stored in git. Building with MagicMime support makes it possible to
condition the behavior on a file's MIME type.
* gnu/packages/haskell-apps.scm (git-annex)[inputs]: Add ghc-magic.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/haskell-xyz.scm (ghc-magic): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/haskell-apps.scm (git-annex)[license]: Update main license to
AGPLv3+ and include other licenses mentioned in the package's COPYRIGHT file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Previously, images produced by 'guix pack -f docker' would always show
up as "profile" in the output of 'docker images'. With this change,
'docker images' shows a name constructed from the packages found in the
image--e.g., "bash-coreutils-grep-sed".
* guix/docker.scm (canonicalize-repository-name): New procedure.
(generate-tag): Remove.
(manifest): Add optional 'tag' parameter and honor it.
(repositories): Likewise.
(build-docker-image): Add #:repository parameter and pass it to
'manifest' and 'repositories'.
* guix/scripts/pack.scm (docker-image)[build]: Compute 'tag' and pass it
as #:repository to 'build-docker-image'.
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* guix/scripts/pack.scm (guix-pack)[manifest-from-args](packages):
Reverse order of packages taken from OPTS.
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* gnu/services/certbot.scm (certbot-command): Add
--manual-public-ip-logging-ok flag to the certbot command when doing a
manual challenge.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/emulators.scm (retroarch): Update to 1.7.8.4.
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* gnu/packages/emulators.scm (mgba): Update to 0.7.3.
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* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
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* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
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* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
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* gnu/packages/bioconductor.scm (r-oligo): New variable.
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* gnu/packages/bioconductor.scm (r-affxparser): New variable.
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* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
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* gnu/packages/cran.scm (r-shinythemes): New variable.
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* gnu/packages/cran.scm (r-shinytree): New variable.
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* gnu/packages/javascript.scm (js-requirejs): New variable.
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* gnu/packages/bioconductor.scm (r-reqon): New variable.
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* gnu/packages/bioconductor.scm (r-seqbias): New variable.
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* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
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* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
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* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
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* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
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* gnu/packages/bioconductor.scm (r-affycontam): New variable.
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* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
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* gnu/packages/bioconductor.scm (r-affycomp): New variable.
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* gnu/packages/bioconductor.scm (r-affydata): New variable.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
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* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
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* gnu/packages/cran.scm (r-spam): Update to 2.3-0.
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* gnu/packages/cran.scm (r-feather): Update to 0.3.5.
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* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6.
[source]: Update to new source uri.
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* gnu/packages/authentication.scm (yubico-pam): New variable.
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* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1.
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* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
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* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
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* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable.
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* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16.
* gnu/packages/wine.scm (wine-staging): Update to 4.16.
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