| Commit message (Collapse) | Author | Age |
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* gnu/packages/emacs.scm (emacs-tldr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/system.scm (%setuid-programs): Add sudoedit.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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python2-miniboa is required for the linkchecker testsuite.
* gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
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I'm looking at this, as this release fixes an issue with the Django testsuite:
https://github.com/python-pillow/Pillow/pull/3525
* gnu/packages/python.scm (python-pillow): Update to 5.4.1.
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* gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
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* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
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* gnu/packages/bioinformatics.scm (r-vegan): Move from here...
* gnu/packages/cran.scm (r-vegan): ...to here.
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* gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
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* gnu/packages/package-management.scm (python-conda)[arguments]: Use
'invoke'.
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* gnu/packages/package-management.scm (python-conda)[native-inputs]: Add
python-cytoolz.
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* gnu/packages/cran.scm (r-raster): New variable.
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* gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
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* gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
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* gnu/packages/cran.scm (r-psych): Update to 1.8.12.
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* gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase
to only use NEON on aarch64.
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* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc6.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc6.
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* gnu/packages/graphviz.scm: Sort package module references; delete
duplicates.
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* gnu/packages/graphviz.scm (python-pygraphviz): New variable.
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* gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
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* gnu/packages/graphviz.scm (graphviz-2.38): New variable.
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* gnu/packages/admin.scm (sudo): Update to 1.8.27.
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* gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
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* gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
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* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
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* gnu/packages/freedesktop.scm (libmbim): Update to 1.18.0.
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* gnu/packages/crypto.scm (libsodium): Update to 1.0.17.
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* gnu/packages/freedesktop.scm (exempi): Update to 2.5.0.
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* gnu/packages/firmware.scm (seabios): Update to 1.12.0.
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* gnu/packages/web.scm (httpd): Update to 2.4.37.
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* gnu/packages/assembly.scm (nasm)[license]: Change to BSD-2.
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* gnu/packages/assembly.scm (nasm)[home-page]: Use HTTPS.
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* gnu/packages/photo.scm (libgphoto2): Update to 2.5.22.
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* gnu/packages/regex.scm (re2): Update to 2019-01-01.
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* gnu/packages/gnome.scm (libsecret): Update to 0.18.7.
[native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
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* gnu/packages/audio.scm (fluidsynth): Update to 2.0.3.
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* gnu/packages/xdisorg.scm (rofi): Update to 1.5.2.
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* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.42.
[arguments]: Add "CFLAGS=-std=c99" to #:make-flags.
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* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.2.
[source](uri): Use XZ-compressed tarball.
[arguments]: Remove #:phases. Don't pass "--disable-werror" in #:configure-flags.
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* gnu/packages/web.scm (http-parser): Update to 2.9.0.
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* gnu/packages/web.scm (http-parser)[source]: Change to GIT-FETCH.
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* gnu/packages/libreoffice.scm (libetonyek)[native-inputs]: Remove LIBLANGTAG.
Move GLM and MDDS to ...
[inputs]: ... here.
[propagated-inputs]: Add LIBLANGTAG and ZLIB.
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* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.9.
[arguments]: Remove #:phases.
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* gnu/packages/libreoffice.scm (libcdr): Update to 0.1.5.
[source](uri): Download over HTTPS.
[arguments]: Remove.
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* gnu/packages/games.scm (tintin++): Update to 2.01.5.
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* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1.
[propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment,
and r-txdb-mmusculus-ucsc-mm9-knowngene.
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* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
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* gnu/packages/bioconductor.scm (r-plgem): New variable.
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* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
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