| Commit message (Collapse) | Author | Age |
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* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
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* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
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* gnu/packages/python.scm (python-termcolor, python2-termcolor): New
variables.
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* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from
PyPi to source archive due to missing test data.
[arguments]: Add check phase after install.
[native-inputs]: Add python-nose, samtools and bcftools.
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* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet
to delete htslib.
[arguments]: Add htslib flags in 'set-flags phase.
[propagated-inputs]: New field. Add htslib.
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* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use
'modify-phases'.
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* gnu/packages/bioinformatics.scm (bcftools): New variable.
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* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
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* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
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* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
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Fixes <http://bugs.gnu.org/22836>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
* guix/scripts/build.scm (options->derivations): Gracefully
handle (package-source p) = #f.
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Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>.
* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
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* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
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* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
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* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
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* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
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* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
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* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
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* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3.
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* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1.
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* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14.
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* gnu/packages/tbb.scm (tbb)[arguments]: Add phase
"fail-on-test-errors".
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* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8.
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* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax.
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* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
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* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag.
[source]: Add patch.
* gnu/packages/patches/azr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/music.scm (qtractor): Update to 0.7.9.
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* guix/profiles.scm (gtk-im-modules): New procedure.
(%default-profile-hooks): Add it.
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* guix/profiles.scm (manifest-lookup-package): Optionally filter store
item matches by version prefix.
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* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
New variable.
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* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
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* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
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* gnu/packages/bioinformatics.scm (r-shortread): New variable.
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* gnu/packages/bioinformatics.scm (r-gostats): New variable.
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* gnu/packages/bioinformatics.scm (r-category): New variable.
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* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
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* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
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* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
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* gnu/packages/statistics.scm (r-batchjobs): New variable.
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* gnu/packages/statistics.scm (r-fail): New variable.
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* gnu/packages/statistics.scm (r-bbmisc): New variable.
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* gnu/packages/statistics.scm (r-checkmate): New variable.
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* gnu/packages/statistics.scm (r-backports): New variable.
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* gnu/packages/statistics.scm (r-sendmailr): New variable.
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* gnu/packages/statistics.scm (r-pheatmap): New variable.
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* gnu/packages/statistics.scm (r-matrix): New variable.
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* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
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* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
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* gnu/packages/statistics.scm (r-hmisc): New variable.
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