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* gnu: Add r-wavcluster.Ricardo Wurmus2019-09-15
| | | | * gnu/packages/bioconductor.scm (r-wavcluster): New variable.
* gnu: r-spam: Update to 2.3-0.Ricardo Wurmus2019-09-15
| | | | * gnu/packages/cran.scm (r-spam): Update to 2.3-0.
* gnu: r-feather: Update to 0.3.5.Ricardo Wurmus2019-09-15
| | | | * gnu/packages/cran.scm (r-feather): Update to 0.3.5.
* gnu: emacs-zerodark-theme: Update to 4.6.Giacomo Leidi2019-09-15
| | | | | * gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6. [source]: Update to new source uri.
* gnu: Add yubico-pam.Ricardo Wurmus2019-09-15
| | | | * gnu/packages/authentication.scm (yubico-pam): New variable.
* gnu: r-delayedmatrixstats: Update to 1.6.1.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1.
* gnu: r-rhdf5lib: Update to 1.6.1.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1.
* gnu: r-rtracklayer: Update to 1.44.4.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4.
* gnu: r-genomicranges: Update to 1.36.1.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1.
* gnu: r-s4vectors: Update to 0.22.1.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1.
* gnu: r-mixomics: Update to 6.8.4.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
* gnu: r-gtrellis: Update to 1.16.1.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
* gnu: r-regioner: Update to 1.16.4.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
* gnu: Add emacs-elixir-mode.Björn Höfling2019-09-14
| | | | * gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable.
* gnu: wine-staging: Update to 4.16.Rutger Helling2019-09-14
| | | | | * gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16. * gnu/packages/wine.scm (wine-staging): Update to 4.16.
* import/utils: beautify-description: Recognize more fragments.Ricardo Wurmus2019-09-14
| | | | | * guix/import/utils.scm (beautify-description): Handle additional common initial sentence fragments in descriptions.
* gnu: r-tidyr: Update to 1.0.0.Ricardo Wurmus2019-09-14
| | | | | * gnu/packages/statistics.scm (r-tidyr): Update to 1.0.0. [propagated-inputs]: Add r-ellipsis, r-lifecycle, and r-vctrs.
* gnu: r-diffusionmap: Update to 1.2.0.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0.
* gnu: r-seqinr: Update to 3.6-1.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-seqinr): Update to 3.6-1.
* gnu: Add r-lifecycle.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-lifecycle): New variable.
* gnu: r-huge: Update to 1.3.3.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-huge): Update to 1.3.3.
* gnu: r-tidytree: Update to 0.2.7.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-tidytree): Update to 0.2.7.
* gnu: r-activity: Update to 1.3.Ricardo Wurmus2019-09-14
| | | | | * gnu/packages/cran.scm (r-activity): Update to 1.3. [propagated-inputs]: Add r-insol.
* gnu: r-sjplot: Update to 2.7.1.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-sjplot): Update to 2.7.1.
* gnu: r-sjstats: Update to 0.17.6.Ricardo Wurmus2019-09-14
| | | | | * gnu/packages/cran.scm (r-sjstats): Update to 0.17.6. [propagated-inputs]: Add r-parameters.
* gnu: r-emmeans: Update to 1.4.1.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-emmeans): Update to 1.4.1.
* gnu: r-sjlabelled: Update to 1.1.1.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.1.
* gnu: r-circlize: Update to 0.4.8.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-circlize): Update to 0.4.8.
* gnu: r-httpuv: Update to 1.5.2.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-httpuv): Update to 1.5.2.
* gnu: Add r-insol.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-insol): New variable.
* gnu: Add r-rgdal.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-rgdal): New variable.
* gnu: Add r-parameters.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/cran.scm (r-parameters): New variable.
* gnu: gnujump: Add desktop file.Efraim Flashner2019-09-13
| | | | | | | This fixes bug#37069. * gnu/packages/games.scm (gnujump)[arguments]: Add custom 'create-desktop-entry phase to install a desktop file.
* gnu: tipp10: Fix path in desktop entry.Efraim Flashner2019-09-13
| | | | | * gnu/packages/patches/tipp10-fix-compiling.patch: Remove changes to hardcode executable path.
* gnu: gmsh: Update home page.Paul Garlick2019-09-13
| | | | | | | This addresses a 'guix lint' warning. * gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL redirection.
* gnu: mcron: Update to 1.1.2.Efraim Flashner2019-09-13
| | | | | | | * gnu/packages/guile-xyz.scm (mcron): Update to 1.1.2. [arguments]: Remove custom 'set-timezone phase. [native-inputs]: Add autoconf, automake, help2man, texinfo. [inputs]: Remove ed, which.
* gnu: shellutils.scm: Sort module inputs.Efraim Flashner2019-09-13
| | | | * gnu/packages/shellutils.scm: Sort module inputs alphabetically.
* gnu: Add zsh-autosuggestions.Collin J. Doering2019-09-13
| | | | | | * gnu/packages/shellutils.scm (zsh-autosuggestions): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add ruby-rspec-wait.Collin J. Doering2019-09-13
| | | | | | * gnu/packages/ruby.scm (ruby-rspec-wait): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* build-system/cargo: Remove unused function.Efraim Flashner2019-09-13
| | | | * guix/build/cargo-build-system.scm (touch): Remove it.
* build-system/cargo: Use 'strip-store-file-name'.Efraim Flashner2019-09-13
| | | | | | | This is a follow-up to f58b2f38e4dfdbb8473fb2816d44fae6ad9cbc79. * guix/build/cargo-build-system.scm (configure): Use bespoke 'strip-store-file-name' function.
* gnu: Add sh-z shell toolCollin J. Doering2019-09-13
| | | | | | * gnu/packages/shellutils.scm (sh-z): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Thunar: Update to 1.8.9.L p R n d n2019-09-13
| | | | | | * gnu/packages/xfce.scm (thunar): Update to 1.8.9. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: openblas: Set 'NUM_THREADS'.Ludovic Courtès2019-09-13
| | | | | | | | | | Until now, OpenBLAS would use at most the N threads, where N is the number of cores that happened to be available on the build machine (typically N=8). * gnu/packages/maths.scm (openblas/fixed-num-threads): New variable. (openblas)[replacement]: New field. (openblas-ilp64): Use 'package/inherit'.
* gnu: python-matplotlib-documentation: Add missing input.Ricardo Wurmus2019-09-13
| | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]: Add python-sphinx-copybutton. (python2-matplotlib-documentation)[native-inputs]: Remove python-sphinx-copybutton.
* gnu: Add python-sphinx-copybutton.Ricardo Wurmus2019-09-13
| | | | * gnu/packages/sphinx.scm (python-sphinx-copybutton): New variable.
* gnu: python-matplotlib: Update to 3.1.1.Ricardo Wurmus2019-09-13
| | | | | | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.1. [native-inputs]: Remove python-nose; add python-pytest and unzip; add jquery-ui. [arguments]: Add build phases "fix-and-disable-failing-tests" and "install-jquery-ui", and move the "check" phase after the "install" phase; use the default backend in setup.cfg. (python2-matplotlib): Keep at version 2.2.3. (python-matplotlib-documentation)[arguments]: Remove "check" phase.
* gnu: Add r-assertr.Wiktor Żelazny2019-09-13
| | | | | | * gnu/packages/cran.scm (r-assertr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-interactive-align: Update to 0.4.2.Brian Leung2019-09-12
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-interactive-align): Update to 0.4.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-doom-themes.Tim Gesthuizen2019-09-12
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-doom-themes): New variable. Co-authored-by: Brett Gilio <brettg@posteo.net> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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