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* gnu: r-randomizr: Update to 0.22.0.Ricardo Wurmus2022-02-01
| | | | * gnu/packages/cran.scm (r-randomizr): Update to 0.22.0.
* gnu: r-pillar: Update to 1.6.5.Ricardo Wurmus2022-02-01
| | | | | * gnu/packages/cran.scm (r-pillar): Update to 1.6.5. [propagated-inputs]: Add r-glue.
* gnu: r-broom: Update to 0.7.12.Ricardo Wurmus2022-02-01
| | | | * gnu/packages/cran.scm (r-broom): Update to 0.7.12.
* gnu: r-energy: Update to 1.7-9.Ricardo Wurmus2022-02-01
| | | | * gnu/packages/cran.scm (r-energy): Update to 1.7-9.
* gnu: r-rcppthread: Update to 2.0.1.Ricardo Wurmus2022-02-01
| | | | * gnu/packages/cran.scm (r-rcppthread): Update to 2.0.1.
* gnu: r-glue: Update to 1.6.1.Ricardo Wurmus2022-02-01
| | | | * gnu/packages/cran.scm (r-glue): Update to 1.6.1.
* gnu: r-datawizard: Update to 0.2.3.Ricardo Wurmus2022-02-01
| | | | * gnu/packages/cran.scm (r-datawizard): Update to 0.2.3.
* gnu: lagrange: Update to 1.10.3.jgart via Guix-patches via2022-02-01
| | | | | | * gnu/packages/web-browsers.scm (lagrange): Update to 1.10.3. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: git-annex: Update to 10.20220127.Kyle Meyer2022-02-01
| | | | | | * gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220127. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: python-ipython: Fix CVE detection.Efraim Flashner2022-02-01
| | | | * gnu/packages/python-xyz.scm (python-ipython)[properties]: New field.
* gnu: %final-inputs-riscv64: Add comment.Efraim Flashner2022-02-01
| | | | | * gnu/packages/commencement.scm (%final-inputs-riscv64): Add comment explaining why this variable needs to exist.
* gnu: libaio: Fix test suite on riscv64-linux.Efraim Flashner2022-02-01
| | | | | * gnu/packages/linux.scm (libaio)[arguments]: Add phase to adjust test code to properly handle riscv.
* gnu: openblas: Fix building on riscv64-linux.Efraim Flashner2022-02-01
| | | | | | * gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags on riscv64-linux to target the correct architecture when building for riscv64-linux.
* doc: Add a rule of thumb to guide enabling new committers.base-for-series-11226base-for-series-11225base-for-series-11224base-for-series-11223base-for-series-11221base-for-series-11219base-for-series-11218base-for-series-11217base-for-series-11216base-for-series-11215base-for-series-11214base-for-series-11213base-for-series-11212base-for-series-11211base-for-series-11210base-for-series-11209base-for-series-11208base-for-series-11206base-for-series-11205Maxim Cournoyer2022-01-31
| | | | | * doc/contributing.texi (Commit Access): Introduce a new rule of thumb to determine if a contributor should be considered to become a committer.
* gnu: i3-wm: Add 'upstream-name' and 'release-monitoring-url'.Ludovic Courtès2022-02-01
| | | | * gnu/packages/wm.scm (i3-wm)[properties]: New field.
* gnu: i3-wm: Update to 4.20.1.Yusuf Talha2022-02-01
| | | | | | * gnu/packages/wm.scm (i3-wm): Update to 4.20.1. [build-system]: Change to MESON-BUILD-SYSTEM. [arguments]: Remove #:configure-flags.
* doc: Document --profile option to "guix environment"Konrad Hinsen2022-02-01
| | | | | | * doc/guix.texi (Invoking guix environment): New paragraph. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* doc: Document --profile option to "guix shell"Konrad Hinsen2022-02-01
| | | | | | * doc/guix.texi (Invoking guix shell): New paragraph. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Remove 'guile-3.0/libgc-7' variant.Ludovic Courtès2022-02-01
| | | | | | | This variant had become unnecessary with 0aef94e7bcbd272720f14c5343f74da5201ef90a and related changes. * gnu/packages/guile.scm (guile-3.0/libgc-7): Remove.
* gnu: Add Lokke.Ludovic Courtès2022-02-01
| | | | | | | * gnu/packages/guile.scm (guile-3.0-for-lokke): New variable. * gnu/packages/guile-xyz.scm (lokke): New variable. * gnu/packages/patches/guile-3.0.7-psyntax-nil.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: linux-libre 4.4: Update to 4.4.301.Leo Famulari2022-01-31
| | | | | * gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.301. (linux-libre-4.4-pristine-source): Update hash.
* gnu: linux-libre 4.9: Update to 4.9.299.Leo Famulari2022-01-31
| | | | | * gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.299. (linux-libre-4.9-pristine-source): Update hash.
* gnu: linux-libre 4.14: Update to 4.14.264.Leo Famulari2022-01-31
| | | | | * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.264. (linux-libre-4.14-pristine-source): Update hash.
* gnu: linux-libre 4.19: Update to 4.19.227.Leo Famulari2022-01-31
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.227. (linux-libre-4.19-pristine-source): Update hash.
* gnu: linux-libre 5.4: Update to 5.4.175.Leo Famulari2022-01-31
| | | | | * gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.175. (linux-libre-5.4-pristine-source): Update hash.
* gnu: linux-libre 5.10: Update to 5.10.95.Leo Famulari2022-01-31
| | | | | * gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.95. (linux-libre-5.10-pristine-source, deblob-scripts-5.10): Update hashes.
* gnu: linux-libre: Update to 5.15.18.Leo Famulari2022-01-31
| | | | | * gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.18. (linux-libre-5.15-pristine-source, deblob-scripts-5.18): Update hashes.
* gnu: linux-libre 5.16: Update to 5.16.4.Leo Famulari2022-01-31
| | | | | * gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.4. (linux-libre-5.16-pristine-source, deblob-scripts-5.16): Update hashes.
* gnu: OBS: Use new package style.base-for-series-11204base-for-series-11203base-for-series-11202base-for-series-11201Andrew Tropin2022-01-31
| | | | | | * gnu/packages/video.scm (obs): Use new package style. Signed-off-by: Leo Famulari <leo@famulari.name>
* services: guix: Add nar-herder-service-type.Christopher Baines2022-01-31
| | | | | | | | | | | | | | | | | | | | | * gnu/services/guix.scm (<nar-herder-configuration>): New record type. (nar-herder-configuration, nar-herder-configuration?, nar-herder-configuration-package, nar-herder-configuration-user, nar-herder-configuration-group, nar-herder-configuration-mirror nar-herder-configuration-database nar-herder-configuration-database-dump nar-herder-configuration-host nar-herder-configuration-port nar-herder-configuration-storage nar-herder-configuration-storage-limit nar-herder-configuration-storage-nar-removal-criteria nar-herder-shepherd-services, nar-herder-activation, nar-herder-account): New procedures. (nar-herder-service-type): New variable. * gnu/tests/guix.scm (%test-nar-herder): New variable. * doc/guix.texi (Guix Services): Document the new service.
* gnu: poke: Update to 2.0.Efraim Flashner2022-01-31
| | | | * gnu/packages/engineering.scm (poke): Update to 2.0.
* gnu: ruby-mustache: Fix race condition.Danny Milosavljevic2022-01-31
| | | | | | | * gnu/packages/patches/ruby-mustache-1.1.1-fix-race-condition-tests.patch: New file. * gnu/packages/ruby.scm (ruby-mustache)[source]<#:origin>: Add it. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: Add scvelo.Ricardo Wurmus2022-01-31
| | | | * gnu/packages/bioinformatics.scm (scvelo): New variable.
* gnu: python-seaborn: Fix build.Ricardo Wurmus2022-01-31
| | | | | | | * gnu/packages/python-xyz.scm (python-seaborn)[source]: Add patch. [arguments]: Add build phase 'patch-more-tests. * gnu/packages/patches/python-seaborn-2690.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: python-anndata: Update to 0.7.8.Ricardo Wurmus2022-01-31
| | | | | | | * gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.8. [arguments]: Embed the appropriate version string instead of letting it try (and fail) to discover the correct string at load time. [propagated-inputs]: Add python-xlrd-1.
* gnu: Add python-xlrd-1.Ricardo Wurmus2022-01-31
| | | | * gnu/packages/python-xyz.scm (python-xlrd-1): New variable.
* gnu: python-louvain-0.6: Update to 0.7.1.Ricardo Wurmus2022-01-31
| | | | | | | | | | * gnu/packages/graph.scm (python-louvain-0.6): Update to 0.7.1. [arguments]: Add build phases 'find-igraph and 'pretend-version. [native-inputs]: Add python-setuptools-scm and python-wheel. Rename this variable... (python-louvain-0.7): ...to this, naturally. * gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Update reference to python-louvain-0.6.
* gnu: python-louvain: Update to 0.16.Ricardo Wurmus2022-01-31
| | | | * gnu/packages/graph.scm (python-louvain): Update to 0.16.
* gnu: bwa-meth: Remove trailing #T from build phase.Ricardo Wurmus2022-01-31
| | | | | * gnu/packages/bioinformatics.scm (bwa-meth)[arguments]: Remove trailing #T from build phase.
* gnu: bwa-meth: Update to 0.2.3.Ricardo Wurmus2022-01-31
| | | | * gnu/packages/bioinformatics.scm (bwa-meth): Update to 0.2.3.
* gnu: fontmanager: Add missing input.Julien Lepiller2022-01-31
| | | | | * gnu/packages/fontutils.scm (fontmanager)[native-inputs]: Add python-wrapper.
* gnu: java-log4j-api: Update to 2.17.1.Julien Lepiller2022-01-31
| | | | * gnu/packages/java.scm (java-log4j-api): Update to 2.17.1.
* gnu: pre-commit: Update to 2.17.0.Vinicius Monego2022-01-31
| | | | * gnu/packages/version-control.scm (pre-commit): Update to 2.17.0.
* gnu: shotcut: Update to 22.01.30.Vinicius Monego2022-01-31
| | | | * gnu/packages/video.scm (shotcut): Update to 22.01.30.
* gnu: texlive-bin: Fix building on riscv64-linux.Efraim Flashner2022-01-31
| | | | | | * gnu/packages/tex.scm (texlive-bin)[arguments]: Adjust configure-flags for riscv64-linux to skip luajit based binaries. Add phase to skip some tests.
* gnu: Remove OpenSSL 1.0.base-for-series-11196base-for-series-11195base-for-series-11194base-for-series-11193base-for-series-11192base-for-series-11191Marius Bakke2022-01-30
| | | | | | This package no longer has any users in Guix. * gnu/packages/tls.scm (openssl-1.0): Remove variable.
* gnu: Remove unused patch.Marius Bakke2022-01-30
| | | | | * gnu/packages/patches/openssl-CVE-2019-1559.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu: OpenSSL: Add 3.0.Marius Bakke2022-01-30
| | | | | | * gnu/packages/tls.scm (openssl-3.0): New variable. * gnu/packages/patches/openssl-3.0-c-rehash-in.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu: util-linux-with-udev: Remove input labels.Marius Bakke2022-01-30
| | | | * gnu/packages/linux.scm (util-linux+udev)[inputs]: Use MODIFY-INPUTS.
* gnu: expat: Update replacement to 2.4.4 [fixes CVE-2022-23852, CVE-2022-23990].Marius Bakke2022-01-30
| | | | * gnu/packages/xml.scm (expat/fixed): Update to 2.4.4.
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