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* download: Update CPAN mirrors.Ludovic Courtès2016-07-02
| | | | | * guix/download.scm (%mirrors)[cpan]: Remove enstimac.fr, which seems dead; add ibcp.fr.
* gnu: Add perl-ipc-system-simple.Alex Sassmannshausen2016-07-02
| | | | | | * gnu/packages/perl.scm (perl-ipc-system-simple): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add perl-guard.Alex Sassmannshausen2016-07-02
| | | | | | * gnu/packages/perl.scm (perl-guard): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add perl-file-zglob.Alex Sassmannshausen2016-07-02
| | | | | | * gnu/packages/perl.scm (perl-file-zglob): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add perl-config-ini.Alex Sassmannshausen2016-07-02
| | | | | | * gnu/packages/perl.scm (perl-config-ini): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add perl-mixin-linewise.Alex Sassmannshausen2016-07-02
| | | | | | * gnu/packages/perl.scm (perl-mixin-linewise): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add perl-perlio-utf8-strict.Alex Sassmannshausen2016-07-02
| | | | | | * gnu/packages/perl.scm (perl-perlio-utf8_strict): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add perl-test-class-most.Alex Sassmannshausen2016-07-02
| | | | | | * gnu/packages/perl.scm (perl-test-class-most): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add perl-test-class.Alex Sassmannshausen2016-07-02
| | | | | | * gnu/packages/perl.scm (perl-test-class): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: perl-text-diff: Update perl-text-diff.Alex Sassmannshausen2016-07-02
| | | | | | * gnu/packages/perl.scm (perl-text-diff): Correct URL, update to 1.44. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add midicsv.John J. Foerch2016-07-02
| | | | | | * gnu/packages/music.scm (midicsv): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gimp: Fix CVE-2016-4994.Leo Famulari2016-07-02
| | | | | | * gnu/packages/patches/gimp-CVE-2016-4994.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gimp.scm (gimp): Use it.
* tests: install: Adjust to new 'marionette-service-type' interface.Ludovic Courtès2016-07-02
| | | | | | | | This is a followup to 037f9e07cd03d6894a6b5fc9a252c34d3b163962. Reported by Mark H Weaver. * gnu/tests/install.scm (%minimal-os): Pass a <marionette-configuration> object as the value for the MARIONETTE-SERVICE-TYPE.
* gnu: python-sphinx-repoze-autointerface: Update to 0.8.Leo Famulari2016-07-01
| | | | | * gnu/packages/python.scm (python-sphinx-repoze-autointerface, python2-sphinx-repoze-autointerface): Update to 0.8.
* gnu: imagemagick: Update to 6.9.5-0.Leo Famulari2016-07-01
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-0.
* gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.4.Leo Famulari2016-07-01
| | | | | | | | * gnu/packages/python.scm (python-cryptography, python2-cryptography): Update to 1.3.4. [source]: Use pypi-uri. (python-cryptography-vectors, python2-cryptography-vectors): Update to 1.3.4. [source]: Use pypi-uri.
* gnu: rofi: Update to 1.1.0.Efraim Flashner2016-07-01
| | | | * gnu/packages/xdisorg.scm (rofi): Update to 1.1.0.
* gnu: libreoffice: Update to 5.1.4.2 [fixes CVE-2016-4324].Efraim Flashner2016-07-01
| | | | | | * gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.4.2. [native-inputs]: Switch python to python-wrapper. [arguments]: Add '--without-doxygen' and '--disable-gtk3'.
* gnu: orcus: Update to 0.9.2.Efraim Flashner2016-07-01
| | | | * gnu/packages/libreoffice.scm (orcus): Update to 0.9.2.
* gnu: vsearch: Update to 2.0.1.Ben Woodcroft2016-07-01
| | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.1.
* gnu: Add r-glmnet.Ben Woodcroft2016-07-01
| | | | * gnu/packages/statistics.scm (r-glmnet): New variable.
* gnu: busybox: Use 'modify-phases'.Efraim Flashner2016-06-30
| | | | * gnu/packages/busybox.scm (busybox)[arguments]: Use 'modify-phases'.
* gnu: busybox: Update to 1.25.0.Efraim Flashner2016-06-30
| | | | | * gnu/packages/busybox.scm (busybox): Update to 1.25.0. [native-inputs]: Add which.
* gnu: owncloud-client: Remove some bundled libs.Efraim Flashner2016-06-30
| | | | | * gnu/packages/owncloud.scm (owncloud-client)[source]: Add a snippet removing some of the 3rd party projects.
* gnu: owncloud-client: Update to 2.2.2.Efraim Flashner2016-06-30
| | | | * gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.2.
* gnu: Add python-prompt-toolkit.Danny Milosavljevic2016-06-29
| | | | | | | * gnu/packages/python.scm (python-prompt-toolkit, python2-prompt-toolkit): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-wcwidth: Add missing 'properties' field.Leo Famulari2016-06-29
| | | | | | This is a followup to commit a44fd439dcef88b33c00db94fb3419e097401fee. * gnu/packages/python.scm (python-wcwidth)[properties]: New field.
* gnu: ceres-solver: Propagate GLOG.Ludovic Courtès2016-06-29
| | | | | * gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to... [propagated-inputs]: ... here. New field.
* gnu: linux-initrd: Support NVMe devices.Jan Nieuwenhuizen2016-06-29
| | | | | | * gnu/system/linux-initrd.scm (base-initrd): Add nvme to linux-modules. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* download: Use basic authentication when userinfo is present in URI.David Thompson2016-06-29
| | | | | | | * guix/download.scm (url-fetch): Include (guix base64) module on the build-side. * guix/build/download.scm (http-fetch): Add "Authorization" header when userinfo is present in the URI.
* gnu: blast+: Update to 2.4.0.Ben Woodcroft2016-06-29
| | | | * gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
* gnu: ceres-solver: Depend on glog.Ludovic Courtès2016-06-29
| | | | | * gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON. [inputs]: Add GLOG.
* gnu: Add glog.Ludovic Courtès2016-06-29
| | | | * gnu/packages/logging.scm (glog): New variable.
* gnu: node: Make sure 'npm' remains a symlink after 'patch-shebangs'.Ludovic Courtès2016-06-29
| | | | | | | | | Fixes <http://bugs.gnu.org/23744>. Reported by Jovany Leandro G.C <bit4bit@riseup.net> and Jelle Licht <jlicht@fsfe.org>. * gnu/packages/node.scm (node)[arguments]: Replace 'patch-shebangs' phase.
* gnu: openexr: Install 'ImfStdIO.h'.Ludovic Courtès2016-06-29
| | | | | * gnu/packages/graphics.scm (openexr)[source](snippet): Modify IlmImf/Makefile.in so that it installs 'ImfStdIO.h'.
* gnu: avrdude: Use libusb-compat.Ricardo Wurmus2016-06-29
| | | | | | | * gnu/packages/patches/avrdude-fix-libusb.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch. [inputs]: Replace "libusb" with "libusb-compat".
* gnu: star: Update to 2.5.2a.Ben Woodcroft2016-06-29
| | | | * gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
* gnu: htslib: Update to 1.3.1.Ben Woodcroft2016-06-29
| | | | * gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
* gnu: Add SEEK.Ricardo Wurmus2016-06-28
| | | | * gnu/packages/bioinformatics.scm (seek): New variable.
* gnu: mafft: Update to 7.299.Ben Woodcroft2016-06-28
| | | | * gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
* Revert "gnu: qtbase: Don't propagate mesa."Efraim Flashner2016-06-28
| | | | This reverts commit 763a8e6e235cf464306214349dad21979f2645f0.
* gnu: metabat: Update to 0.26.3.Ben Woodcroft2016-06-28
| | | | | * gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3. [arguments]: Update include and linking paths accordingly.
* gnu: diamond: Update to 0.8.9.Ben Woodcroft2016-06-28
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
* gnu: r: Add pango to inputs.Ricardo Wurmus2016-06-28
| | | | * gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
* tests: Add Avahi and NSS-mDNS test.Ludovic Courtès2016-06-27
| | | | | | * gnu/tests/base.scm (%avahi-os): New variable. (run-nss-mdns-test): New procedure. (%test-nss-mdns): New variable.
* services: avahi: Add #:debug? parameter.Ludovic Courtès2016-06-27
| | | | | | | * gnu/services/avahi.scm (<avahi-configuration>)[debug?]: New field. (avahi-shepherd-service): Honor it. (avahi-service): Add #:debug? and honor it. * doc/guix.texi (Networking Services): Adjust accordingly.
* services: avahi: Pass --daemonize and check for the PID file.Ludovic Courtès2016-06-27
| | | | | | | | This makes sure the service's 'start' finishes when avahi-daemon is ready to process requests. * gnu/services/avahi.scm (avahi-shepherd-service): Use --daemonize instead of --syslog and add #:pid-file.
* tests: 'marionette-service-type' nows takes a <marionette-configuration>.Ludovic Courtès2016-06-27
| | | | | | | * gnu/tests.scm (<marionette-configuration>): New record type. (marionette-shepherd-service): Argument now is a <marionette-configuration>. (marionette-operating-system): Adjust accordingly. Add #:requirements parameter and honor it.
* tests: base: Add host name resolution tests.Ludovic Courtès2016-06-27
| | | | | * gnu/tests/base.scm (run-basic-test)["host name resolution", "host not found"]: New tests.
* services: Export more service types.Ludovic Courtès2016-06-27
| | | | | * gnu/services/base.scm (syslog-service-type): Export. (urandom-seed-service-type): Export.
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