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* etc: Add snippets.Ricardo Wurmus2017-12-15
| | | | | | | | | | | | * etc/snippets/scheme-mode/guix-cvs-reference, etc/snippets/scheme-mode/guix-git-reference, etc/snippets/scheme-mode/guix-hg-reference, etc/snippets/scheme-mode/guix-origin, etc/snippets/scheme-mode/guix-package, etc/snippets/scheme-mode/guix-svn-reference, etc/snippets/text-mode/guix-commit-message-add-package, etc/snippets/text-mode/guix-commit-message-update-package: New files. * doc/contributing.texi (The Perfect Setup): Document snippets.
* gnu: texlive-bin: Disable tests on aarch64.Eric Bavier2017-12-15
| | | | * gnu/packages/tex.scm (texlive-bin)[arguments]: Disable tests on aarch64.
* gnu: ceres-solver: Update to 1.13.0.Eric Bavier2017-12-15
| | | | * gnu/packages/maths.scm (ceres-solver): Update to 1.13.0.
* gnu: eigen: Update to 3.3.4.Eric Bavier2017-12-15
| | | | | | | | * gnu/packages/patches/eigen-arm-neon-fixes.patch: New patch. * gnu/packages/algebra.scm (eigen): Update to 3.3.4. [source]: Use patch. Disable svd-preallocation test for BDCSVD. [arguments]: Set "EIGEN_SEED" environment variable in check phase. * gnu/local.mk (dist_patch_DATA): Add patch.
* gnu: python-pyicu: Set python2-variant.Tobias Geerinckx-Rice2017-12-15
| | | | | | | This follows up on commit d65854bdda4ad5464fcd8fe6289eedc13ea82ba1, which did not fix test failures for dependents using package-with-python2. * gnu/packages/python.scm (python-pyicu)[properties]: Set python2-variant.
* gnu: r-foreach: Update to 1.4.4.Tobias Geerinckx-Rice2017-12-15
| | | | * gnu/packages/statistics.scm (r-foreach): Update to 1.4.4
* gnu: text-editors: Fix nckx's copyright statement.Tobias Geerinckx-Rice2017-12-15
| | | | | * gnu/packages/text-editors.scm: Fix Tobias Geerinckx-Rice's copyright statement.
* gnu: ghc-reflection: Update to 2.1.2.Tobias Geerinckx-Rice2017-12-15
| | | | * gnu/packages/haskell.scm (ghc-reflection): Update to 2.1.2.
* gnu: Add lookingglass.Rutger Helling2017-12-15
| | | | | | * gnu/packages/virtualization.scm (lookingglass): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* system: Add BeagleBone Black installer.Mathieu Othacehe2017-12-15
| | | | | | * gnu/bootloader/u-boot.scm (u-boot-beaglebone-black-bootloader): New exported bootloader. * gnu/system/install.scm (beaglebone-black-installation-os): New exported variable.
* scripts: system: Add --expression option.Mathieu Othacehe2017-12-15
| | | | | | | | | * guix/scripts/system.scm (show-help): Add expression option. (%options): Ditto. (guix-system): Allow commands taking a file as an argument to use an expression instead. (process-action): Read operating-system from expression or file. * doc/guix.texi (Invoking guix system): Introduce the expression option.
* gnu: python2-pyicu: Disable failing test.Tobias Geerinckx-Rice2017-12-15
| | | | | * gnu/packages/python.scm (python2-pyicu)[arguments]: Add ‘delete-failing-test’ phase.
* gnu: vis: Update to 0.4.Tobias Geerinckx-Rice2017-12-15
| | | | | | * gnu/packages/text-editors.scm (vis): Update to 0.4. [arguments]: Document the #:tests situation and the (broken) #:test-target. [inputs]: Add tre.
* gnu: Add Easytag.Pierre Langlois2017-12-15
| | | | | | * gnu/packages/music.scm (easytag): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* progress: Rename 'erase-in-line' to 'erase-current-line'.Ludovic Courtès2017-12-15
| | | | | | | Suggested by Danny Milosavljevic <dannym@scratchpost.org>. * guix/progress.scm (erase-in-line): Rename to... (erase-current-line): ... this. Adjust callers.
* bootloader: Factorize write-file-on-device.Mathieu Othacehe2017-12-15
| | | | | | | | | | | * gnu/bootloader/extlinux.scm (install-extlinux): Factorize bootloader writing in a new procedure write-file-on-device defined in (gnu build bootloader). * gnu/build/bootloader.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add new file. * gnu/system/vm.scm (qemu-img): Adapt to import and use (gnu build bootloader) module during derivation building. * gnu/scripts/system.scm (bootloader-installer-derivation): Ditto.
* vm: Adapt qemu command to ARM.Mathieu Othacehe2017-12-15
| | | | | | | | | | | * gnu/build/vm.scm (load-in-linux-vm): New argument #:target-arm32. Use it to adapt command for qemu-system-arm. This implies to choose a machine ("virt"), use the correct console port "ttyAMA0", disable KVM use that is buggy on some ARM boards (Odroid XU4 for example) and use user mode network stack instead of NIC. Gather all those options in a new variable "arch-specific-flags". * gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass to load-in-linux-vm "#:target-arm32?" argument.
* doc: Fix typo.Oleg Pykhalov2017-12-15
| | | | * doc/guix.texi (DNS Services): Fix knot-configuration.
* gnu: ruby: Replace with ruby-2.4.3 [fixes CVE-2017-17405].Ben Woodcroft2017-12-15
| | | | | * gnu/packages/ruby.scm (ruby-2.4.3): New variable. (ruby)[replacement]: New field.
* gnu: bedtools: Update to 2.27.1.Ben Woodcroft2017-12-15
| | | | * gnu/packages/ruby.scm (bedtools): Update to 2.27.1.
* gnu: ruby-2.2: Update to 2.2.9 [fixes CVE-2017-17405].Ben Woodcroft2017-12-15
| | | | * gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.9.
* gnu: ruby-2.3: Update to 2.3.6 [fixes CVE-2017-17405].Ben Woodcroft2017-12-15
| | | | * gnu/packages/ruby.scm (ruby-2.3): Update to 2.3.6.
* gnu: yoshimi: Update to 1.5.5.Ricardo Wurmus2017-12-15
| | | | * gnu/packages/music.scm (yoshimi): Update to 1.5.5.
* guix: ant-build-system: Do not compress jars.Ricardo Wurmus2017-12-15
| | | | | | | Fixes <https://bugs.gnu.org/29700>. * guix/build/ant-build-system.scm (strip-jar-timestamps): Do not compress jar when repacking.
* gnu: s-shell: Update to commit da2e5c20c0c5f477ec3426dc2584889a789b1659.ng02017-12-14
| | | | | | | * gnu/packages/shells.scm (s-shell): Update to commit da2e5c20c0c5f477ec3426dc2584889a789b1659. [version]: Use 'git-version'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: xpra: Update to 2.2.Rutger Helling2017-12-14
| | | | | | | | * gnu/packages/xorg.scm (xpra): Update to 2.2. [inputs]: Add python2-netifaces and python2-pyopengl-accelerate. Fix position of commas. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python2-pyopengl-accelerate.Rutger Helling2017-12-14
| | | | | | * gnu/packages/python.scm (python2-pyopengl-accelerate): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-scikit-learn: Patch test non-determinism.Ben Woodcroft2017-12-14
| | | | | | | * gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch: New file. * gnu/packages/machine-learning.scm (python-scikit-learn)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: diamond: Update to 0.9.14.Ben Woodcroft2017-12-14
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.14.
* gnu: gucharmap: Use glib-or-gtk-build-system.Andy Wingo2017-12-14
| | | | * gnu/packages/gnome.scm (gucharmap): Use glib-or-gtk-build-system.
* gnu: Erlang: Update to 20.1.7 [fixes CVE-2017-1000385].Leo Famulari2017-12-13
| | | | | * gnu/packages/erlang.scm (erlang): Update to 20.1.7 (native-inputs): Use version-major+minor in the URI of erlang-manpages.
* gnu: youtube-dl: Update to 2017.12.14.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2017.12.14.
* gnu: r-caret: Update to 6.0-78.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/statistics.scm (r-caret): Update to 6.0-78
* gnu: r-domc: Update to 1.3.5.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/statistics.scm (r-domc): Update to 1.3.5
* gnu: perl-text-bibtex: Update to 0.85.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/tex.scm (perl-text-bibtex): Update to 0.85
* gnu: perl-test-requires: Update to 0.10.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/perl-check.scm (perl-test-requires): Update to 0.10
* gnu: perl-test-pod: Update to 1.51.Tobias Geerinckx-Rice2017-12-14
| | | | | * gnu/packages/perl-check.scm (perl-test-pod): Update to 1.51 [source]: Update URI.
* gnu: perl-test-mocktime: Update to 0.15.Tobias Geerinckx-Rice2017-12-14
| | | | | * gnu/packages/perl-check.scm (perl-test-mocktime): Update to 0.15 [propagated-inputs]: Add perl-time-piece.
* gnu: Add perl-time-piece.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/perl.scm (perl-time-piece): New public variable.
* hydra: Pre-load the compiler.Ludovic Courtès2017-12-13
| | | | | | | | Starting from Guile 2.2.3, '%fresh-auto-compile' does what it says and would auto-compile everything, including the compiler (see <https://bugs.gnu.org/29226>). * build-aux/hydra/gnu-system.scm: Call 'compile'.
* hydra: Invalidate derivation caches after each architecture evaluation.Ludovic Courtès2017-12-13
| | | | | | | | This reduces max RSS from 1.3G to 1.0G. * guix/derivations.scm (invalidate-derivation-caches!): New procedure. * build-aux/hydra/gnu-system.scm (hydra-jobs): Use it. Add 'format' call.
* memoization: Add 'invalidate-memoization!.Ludovic Courtès2017-12-13
| | | | | | * guix/memoization.scm (%make-hash-table*): When not profiling, add the new table to %MEMOIZATION-TABLES. (invalidate-memoization!): New procedure.
* derivations: Don't memoize 'derivation-hash'.Ludovic Courtès2017-12-13
| | | | | | | | This has little or no run-time impact and slightly reduces the memory footprint. * guix/derivations.scm (derivation-hash): Replace 'mlambda' with 'lambda'.
* derivations: Split 'derivation-hash' in two procedures.Ludovic Courtès2017-12-13
| | | | | * guix/derivations.scm (derivation/masked-inputs): New procedure. (derivation-hash): Use it instead of the inline code.
* gnu: notmuch: Move elisp directory and generate autoloads.Arun Isaac2017-12-13
| | | | | | * gnu/packages/mail.scm (notmuch)[arguments]: Move elisp files to share/emacs/site-lisp/guix.d/notmuch-<version>. Add make-autoloads phase.
* pull: Add (guix profiling) to the build environment.Ludovic Courtès2017-12-13
| | | | | | Reported by Ricardo Wurmus. * build-aux/build-self.scm (build): Add (guix profiling).
* Revert "derivations: 'derivation-hash' assumes inputs are coalesced."Ludovic Courtès2017-12-13
| | | | | | This reverts commit 1d008d9f8c44dfdb808235d451b72f255e72f103. Reported by Rutger Helling <rhelling@mykolab.com>. Fixes <https://bugs.gnu.org/29689>.
* gnu: polyml: Update to 5.7.1.Tobias Geerinckx-Rice2017-12-13
| | | | * gnu/packages/sml.scm (polyml): Update to 5.7.1.
* gnu: guile-gdbm-ffi: Install documentation.Tobias Geerinckx-Rice2017-12-13
| | | | | * gnu/packages/guile.scm (guile-gdbm-ffi)[arguments]: Install README.md and some examples. Tidy up MKDIR-P calls.
* gnu: gtksourceview: Update to 3.24.6.Tobias Geerinckx-Rice2017-12-13
| | | | * gnu/packages/gtk.scm (gtksourceview): Update to 3.24.6
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