| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioinformatics.scm (java-picard-1.113): Use
'search-input-file' when looking for *.jar.
(fastqc): Likewise.
* gnu/packages/groovy.scm (groovy): Likewise.
* gnu/packages/java.scm (ant-bootstrap): Likewise.
(ecj-bootstrap): Likewise.
(java-cisd-base): Likewise.
(java-cisd-args4j): Likewise.
(java-cisd-jhdf5): Likewise.
(java-native-access): Likewise.
(java-native-access-platform): Likewise.
* gnu/packages/maths.scm (hdf-java): Likewise.
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* gnu/packages/gnuzilla.scm (mozjs-52): Use 'which' for "autoconf".
(mozjs-60): Likewise.
(mozjs-78): Likewise.
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* gnu/packages/admin.scm (isc-dhcp): Use 'search-input-file' when
looking for executables.
* gnu/packages/audio.scm (ableton-link): Likewise.
* gnu/packages/benchmark.scm (fio): Likewise.
* gnu/packages/bioinformatics.scm (roary): Likewise.
(ngless): Likewise.
* gnu/packages/boost.scm (boost-for-irods): Likewise.
* gnu/packages/bootloaders.scm (grub): Likewise.
(grub-efi): Likewise.
* gnu/packages/chemistry.scm (inchi): Likewise.
* gnu/packages/dictionaries.scm (ding): Likewise.
* gnu/packages/dlang.scm (ldc): Likewise.
* gnu/packages/education.scm (childsplay): Likewise.
* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Likewise.
(emacs-haskell-mode): Likewise.
(emacs-auctex): Likewise.
(emacs-ggtags): Likewise.
(emacs-graphviz-dot-mode): Likewise.
(emacs-flycheck-grammalecte): Likewise.
(emacs-counsel-notmuch): Likewise.
(emacspeak): Likewise.
(emacs-exwm): Likewise.
(emacs-exwm-x): Likewise.
(emacs-treemacs): Likewise.
(emacs-telega): Likewise.
(emacs-exiftool): Likewise.
* gnu/packages/emulators.scm (higan): Likewise.
* gnu/packages/engineering.scm (freehdl): Likewise.
(librepcb): Likewise.
* gnu/packages/entr.scm (entr): Likewise.
* gnu/packages/file-systems.scm (libeatmydata): Likewise.
(xfstests): Likewise.
(mergerfs): Likewise.
(mergerfs-tools): Likewise.
* gnu/packages/finance.scm (monero-gui): Likewise.
* gnu/packages/flashing-tools.scm (flashrom): Likewise.
* gnu/packages/fontutils.scm (fontforge): Likewise.
* gnu/packages/game-development.scm (python2-renpy): Likewise.
* gnu/packages/games.scm (opensurge): Likewise.
(xboard): Likewise.
(hyperrogue): Likewise.
(flare-game): Likewise.
(chessx): Likewise.
* gnu/packages/geo.scm (grass): Likewise.
* gnu/packages/glib.scm (glib): Likewise.
* gnu/packages/gnome.scm (mm-common): Likewise.
(network-manager-openvpn): Likewise.
(network-manager-vpnc): Likewise.
(network-manager-openconnect): Likewise.
(apostrophe): Likewise.
* gnu/packages/gnupg.scm (pius): Likewise.
(jetring): Likewise.
* gnu/packages/gnuzilla.scm (icedove): Likewise.
* gnu/packages/golang.scm (go-1.4): Likewise.
* gnu/packages/graphviz.scm (xdot): Likewise.
* gnu/packages/guile-xyz.scm (jupyter-guile-kernel): Likewise.
* gnu/packages/haskell-xyz.scm (ghc-hindent): Likewise.
* gnu/packages/ibus.scm (ibus): Likewise.
* gnu/packages/image.scm (phockup): Likewise.
* gnu/packages/irc.scm (quassel): Likewise.
* gnu/packages/java.scm (drip): Likewise.
(ant-bootstrap): Likewise.
(tla2tools): Likewise.
* gnu/packages/julia.scm (julia): Likewise.
* gnu/packages/less.scm (lesspipe): Likewise.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/linux.scm (fuse): Likewise.
(lm-sensors): Likewise.
(bluez): Likewise.
(fakeroot): Likewise.
(inputattach): Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-cl-diskspace): Likewise.
* gnu/packages/lisp.scm (lisp-repl-core-dumper): Likewise.
* gnu/packages/lua.scm (fennel): Likewise.
* gnu/packages/lxde.scm (spacefm): Likewise.
* gnu/packages/mail.scm (public-inbox): Likewise.
* gnu/packages/maths.scm (hdf-java): Likewise.
(maxima): Likewise.
(frama-c): Likewise.
* gnu/packages/messaging.scm (libgadu): Likewise.
* gnu/packages/music.scm (denemo): Likewise.
(curseradio): Likewise.
* gnu/packages/netpbm.scm (netpbm): Likewise.
* gnu/packages/networking.scm (blueman): Likewise.
(squid): Likewise.
(aircrack-ng): Likewise.
* gnu/packages/node.scm (node): Likewise.
(node-llparse-frontend-bootstrap): Likewise.
(node-llparse-bootstrap): Likewise.
(llhttp-bootstrap): Likewise.
(node-lts): Likewise.
* gnu/packages/ocaml.scm (ocaml-4.11): Likewise.
(opam): Likewise.
(ocaml-graph): Likewise.
* gnu/packages/orpheus.scm (orpheus): Likewise.
* gnu/packages/password-utils.scm (password-store): Likewise.
* gnu/packages/python.scm (pypy3): Likewise.
* gnu/packages/qt.scm (qt5ct): Likewise.
* gnu/packages/radio.scm (libosmo-dsp): Likewise.
* gnu/packages/ruby.scm (ruby-pandoc-ruby): Likewise.
* gnu/packages/rust.scm (rust-1.30): Likewise.
* gnu/packages/screen.scm (byobu): Likewise.
* gnu/packages/statistics.scm (r-with-tests): Likewise.
* gnu/packages/suckless.scm (surf): Likewise.
* gnu/packages/syndication.scm (gfeeds): Likewise.
* gnu/packages/telephony.scm (mumble): Likewise.
* gnu/packages/terminals.scm (alacritty): Likewise.
* gnu/packages/tex.scm (texlive-bin): Likewise.
* gnu/packages/uml.scm (plantuml): Likewise.
* gnu/packages/version-control.scm (python-git-multimail): Likewise.
(gitolite): Likewise.
(hg-commitsigs): Likewise.
(git-when-merged): Likewise.
(git-imerge): Likewise.
(gita): Likewise.
* gnu/packages/video.scm (you-get): Likewise.
* gnu/packages/vim.scm (eovim): Likewise.
* gnu/packages/virtualization.scm (qemu): Likewise.
(virt-manager): Likewise.
(criu): Likewise.
* gnu/packages/vpn.scm (strongswan): Likewise.
(xl2tpd): Likewise.
* gnu/packages/wm.scm (i3lock-fancy): Likewise.
* gnu/packages/wxwidgets.scm (python-wxpython): Likewise.
(python2-wxpython): Likewise.
* gnu/packages/xdisorg.scm (autorandr): Likewise.
* gnu/packages/xorg.scm (hackneyed-x11-cursors): Likewise.
(v86d): Likewise.
(mkfontdir): Likewise.
(xpra): Likewise.
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* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use
'search-input-file' when looking for *.a and *.so.
* gnu/packages/emulators.scm (dolphin-emu): Likewise.
* gnu/packages/engineering.scm (lepton-eda): Likewise.
(pcb): Likewise.
* gnu/packages/golang.scm (go-1.4): Likewise.
(go-1.14): Likewise.
* gnu/packages/haskell.scm (ghc-7): Likewise.
* gnu/packages/irods.scm (irods): Likewise.
* gnu/packages/language.scm (python2-tegaki-pygtk): Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-lzlib): Likewise.
(sbcl-cl-gobject-introspection): Likewise.
(sbcl-cl-ana): Likewise.
(sbcl-cl-libuv): Likewise.
(sbcl-cl-async): Likewise.
(sbcl-mcclim): Likewise.
(sbcl-zstd): Likewise.
(sbcl-cl-opengl): Likewise.
(sbcl-lev): Likewise.
(sbcl-cl-glfw3): Likewise.
* gnu/packages/machine-learning.scm (tensorflow): Likewise.
* gnu/packages/messaging.scm (utox): Likewise.
* gnu/packages/mpi.scm (java-openmpi): Likewise.
* gnu/packages/music.scm (jack-select): Likewise.
* gnu/packages/pascal.scm (fpc): Likewise.
* gnu/packages/python-crypto.scm (python-libnacl): Likewise.
* gnu/packages/python-xyz.scm (python-cairocffi): Likewise.
(python-pyev): Likewise.
(python-pytidylib): Likewise.
* gnu/packages/radio.scm (unixcw): Likewise.
* gnu/packages/rust.scm (rust-1.32): Likewise.
* gnu/packages/security-token.scm (opensc): Likewise.
(python-pyscard): Likewise.
* gnu/packages/selinux.scm (python-setools): Likewise.
* gnu/packages/spice.scm (libcacard): Likewise.
* gnu/packages/telephony.scm (libtgvoip): Likewise.
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* gnu/packages/arcan.scm (arcan)[arguments]: Use
'search-input-directory' for "include/libdrm" and "include/apr-1".
* gnu/packages/bioinformatics.scm (sailfish): Likewise for jellyfish.
* gnu/packages/boost.scm (boost-for-irods): Likewise for libcxx headers.
* gnu/packages/cedille.scm (cedille): Likewise for IAL headers.
* gnu/packages/compression.scm (snappy-with-clang6): Likewise for libcxx
headers.
* gnu/packages/cups.scm (hplip): Likewise for libusb headers.
* gnu/packages/emulators.scm (pcsxr): Likewise for libcdio headers.
* gnu/packages/game-development.scm (python2-renpy): Likewise for
fribidi headers.
* gnu/packages/games.scm (pokerth): Likewise for libircclient.
* gnu/packages/guile-xyz.scm (guile-persist): Likewise for Guile.
* gnu/packages/hurd.scm (hurd): Likewise for libtirpc.
* gnu/packages/irods.scm (irods, irods-client-icommands): Likewise for
libcxx, catch2, and nlohmann-json-cpp.
* gnu/packages/julia.scm (julia): Use 'search-input-file' for libuv's
errno.h.
* gnu/packages/kde-pim.scm (kdepim-runtime): Use
'search-input-directory' for "include/KF5".
(kmessagelib): Likewise.
* gnu/packages/kde.scm (kdeconnect): Likewise.
* gnu/packages/llvm.scm (clang-runtime-3.5): Likewise for libtirpc.
* gnu/packages/mpi.scm (openmpi): Likewise for "include/infiniband".
* gnu/packages/pumpio.scm (pumpa): Use 'search-input-file' for "tidy.h"
and "aspell.h".
* gnu/packages/radio.scm (dream): Use 'search-input-file' and
'search-input-directory' for pulseaudio, sndfile, etc.
* gnu/packages/selinux.scm (policycoreutils): Likewise for PAM and
libaudit.
* gnu/packages/serialization.scm (avro-cpp-1.9-for-irods): Likewise for
libcxx.
* gnu/packages/sync.scm (nextcloud-client): Likewise for "include/KF5".
* gnu/packages/video.scm (mkvtoolnix): Likewise for "include/gtest".
(libopenshot): Likewise for "include/UnitTest++".
* gnu/packages/virtualization.scm (criu): Likewise for libnl3 and for
protobuf file.
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* gnu/packages/gnome.scm (gnome-desktop)[arguments]: Use
'search-input-directory' when searching for glibc's "lib/locale".
* gnu/packages/gnome.scm (geocode-glib): Likewise.
* gnu/packages/package-management.scm (flatpak): Likewise.
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* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use
'search-input-directory' when searching for Eigen headers.
* gnu/packages/bioinformatics.scm (nanopolish): Likewise.
* gnu/packages/machine-learning.scm (tensorflow): Likewise.
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* gnu/packages/audio.scm (libsbsms)[arguments]: Use 'search-input-file'
when searching for Automake file.
* gnu/packages/maths.scm (hdf-java): Likewise.
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* gnu/packages/graphics.scm (blender): Use 'search-input-directory' when
searching for "include/OpenEXR".
(blender-2.79): Likewise.
* gnu/packages/image-processing.scm (opencv): Likewise.
* gnu/packages/image-viewers.scm (luminance-hdr): Likewise.
* gnu/packages/photo.scm (darktable): Likewise.
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* gnu/packages/education.scm (gcompris)[arguments]: Use
'search-input-directory' when searching for SDL headers.
* gnu/packages/education.scm (t4k-common): Likewise.
(tuxmath): Likewise.
* gnu/packages/game-development.scm (tesseract-engine): Likewise.
* gnu/packages/games.scm (foobillard++): Likewise.
(ltris): Likewise.
(prboom-plus): Likewise.
(abbaye): Likewise.
(red-eclipse): Likewise.
(kiki): Likewise.
(tome4): Likewise.
(btanks): Likewise.
(4dtris): Likewise.
(edgar): Likewise.
* gnu/packages/python-xyz.scm (python-kivy): Likewise.
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* gnu/packages/backup.scm (duplicity)[arguments]: Use
'search-input-directory' for "share/zoneinfo".
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Likewise.
(pigx-bsseq): Likewise.
* gnu/packages/calcurse.scm (calcurse): Likewise.
* gnu/packages/calendar.scm (date): Likewise.
* gnu/packages/compression.scm (lhasa): Likewise.
* gnu/packages/cran.scm (r-rstan): Likewise.
* gnu/packages/django.scm (python-django): Likewise.
* gnu/packages/dlang.scm (ldc-bootstrap): Likewise.
* gnu/packages/finance.scm (ledger): Likewise.
* gnu/packages/glib.scm (glib): Likewise.
* gnu/packages/golang.scm (go-1.4): Likewise.
(go-1.14): Likewise.
* gnu/packages/kde-frameworks.scm (kcalendarcore): Likewise.
(kdelibs4support): Likewise.
* gnu/packages/kodi.scm (kodi): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/perl.scm (perl-libtime-parsedate): Likewise.
* gnu/packages/python-xyz.scm (python-robotframework): Likewise.
(python-dparse): Likewise.
* gnu/packages/rrdtool.scm (rrdtool): Likewise.
* gnu/packages/statistics.scm (r-with-tests): Likewise.
* gnu/packages/vim.scm (vim): Likewise.
* gnu/packages/virtualization.scm (ganeti): Likewise.
* gnu/packages/vpn.scm (strongswan): Likewise.
* gnu/packages/xfce.scm (xfce4-panel): Likewise.
* gnu/packages/mate.scm (libmateweather): Use 'search-input-file' for
"share/zoneinfo/zone.tab".
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* gnu/packages/geo.scm (qgis)[arguments]: Simplify invocation of 'Xvfb'
in 'check' phase, assuming 'Xvfb' is in $PATH.
* gnu/packages/graphics.scm (opensubdiv)[arguments]: Likewise.
* gnu/packages/java-graphics.scm (java-piccolo2d-extras)[arguments]:
Likewise.
* gnu/packages/kde-frameworks.scm (kcontacts)[arguments]: Likewise.
(kdeclarative)[arguments]: Likewise.
* gnu/packages/kde-multimedia.scm (elisa)[arguments]: Likewise.
* gnu/packages/kde-plasma.scm (kscreenlocker)[arguments]: Likewise.
* gnu/packages/radio.scm (gnuradio)[arguments]: Likewise.
* gnu/packages/education.scm (gcompris-qt)[arguments]: Likewise.
* gnu/packages/freedesktop.scm (weston)[arguments]: Likewise.
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* gnu/packages/base.scm (tzdata)[arguments]: Turn flags and phases into
a gexp.
[inputs]: Turn into a plain list.
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* gnu/packages/commencement.scm (tcc-boot): Remove stale comments.
(gcc-core-mesboot0)[native-inputs]: Remove "boot-patch".
[arguments]: Turn flags and phases into gexps. Use 'local-file' in the
'apply-boot-patch' phase to refer to the patch.
(glibc-mesboot0)[native-inputs]: Remove "boot-patch" and "system-patch".
[arguments]: Turn flags and phases into gexps. Use 'local-file' in the
'apply-boot-patch' phase to refer to the patches.
(gcc-mesboot0)[native-inputs]: Remove "boot-patch".
[arguments]: Turn phases into a gexp.
(gcc-core-mesboot1)[native-inputs]: Remove "boot-patch".
[arguments]: Turn flags and phases into gexps. Use 'local-file' in the
'apply-boot-patch' phase to refer to the patch.
(gcc-mesboot1)[arguments]: Turn flags and phases into gexps.
(glibc-headers-mesboot)[arguments]: Likewise.
(glibc-mesboot)[arguments]: Likewise.
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* gnu/packages/python.scm (python-2.7)[arguments]: Remove "--with-lto" and
"--enable-optimizations" from #:configure-flags.
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* gnu/packages/python.scm (python-2.7)[arguments]: Ensure the post-install
phases run in order. Move rebuild-bytecode last and run it on every output.
* gnu/packages/python.scm (python-3.9)[arguments]: Run the rebuild-bytecode
phase on every output.
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* gnu/packages/python.scm (python-3.9)[arguments]: Delete existing pycs before
calling "compileall".
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* gnu/packages/python.scm (python-3.9)[arguments]: In the rebuild-bytecode
phase, actully run Python instead of defining an anonymous procedure. While
at it, create all optimization levels with the same command instead of running
once for each level.
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* gnu/packages/python.scm (python-3.9)[arguments]: Reset timestamps before
zipping wheels. While at it, remove redundant regex argument.
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* gnu/packages/graphviz.scm (graphviz): Update to 2.48.0.
[source](uri): Adjust for upstream change.
[source](file-name): Remove.
[inputs]: Change from GUILE-2.0 to GUILE-3.0.
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* gnu/packages/graphviz.scm (graphviz)[arguments]: Install Guile bindings for
the version of Guile provided as input.
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* gnu/packages/graphviz.scm (graphviz)[arguments]: Use a gexp for the
modify-phases block. Remove trailing #t's while at it.
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* gnu/packages/perl-check.scm (perl-test-needs): Update to 0.002009.
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* gnu/packages/linux.scm (libcap): Update to 2.51.
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* gnu/packages/gnupg.scm (libksba): Update to 1.6.0.
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* gnu/packages/gnupg.scm (libgcrypt): Update to 1.8.8.
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* gnu/packages/patches/libxml2-parent-pointers.patch,
gnu/packages/patches/libxml2-terminating-newline.patch,
gnu/packages/patches/libxml2-xpath-recursion-limit.patch: New files.
* gnu/packages/patches/python-libxml2-python39-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xml.scm (libxml2): Update to 2.9.12.
(python-lxml)[source](modules, snippet): New fields.
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* gnu/packages/image.scm (libtiff): Update to 4.3.0.
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* gnu/packages/sqlite.scm (sqlite): Update to 3.36.0.
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* gnu/packages/pdf.scm (poppler): Update to 21.07.0.
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* gnu/packages/linux.scm (util-linux): Update to 2.37.
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* gnu/packages/gtk.scm (pango): Update to 1.48.7.
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* gnu/packages/gtk.scm (harfbuzz): Update to 2.8.2.
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* gnu/packages/ghostscript.scm (libspectre): Update to 0.2.9.
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* gnu/packages/fontutils.scm (fontconfig): Update to 2.13.94.
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* gnu/packages/patches/binutils-loongson-workaround.patch: Adjust for upstream
changes.
* gnu/packages/patches/binutils-libiberty-endianness-bug.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (binutils): Update to 2.37.
[source](patches): Remove obsolete patch.
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* gnu/packages/attr.scm (attr): Update to 2.5.1.
[arguments]: Remove trailing #t.
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* gnu/packages/acl.scm (acl): Update to 2.3.1.
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* gnu/packages/ncurses.scm (ncurses)[version]: Set to 6.2.20210619.
[source](uri): Adjust accordingly.
[arguments]: Remove trailing #t's. Rewrite apply-rollup-patch phase to work
in the absence of the patch. Run the phase.
[native-inputs]: Add "rollup-patch".
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* gnu/packages/libevent.scm (libuv): Update to 1.41.1.
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* gnu/packages/web.scm (nghttp2): Update to 1.44.0.
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* guix/build-system/cmake.scm (cmake-cross-build)[builder]: Define
'%build-inputs' as it existed before
7d873f194ca69d6096d28d7a224ab78e83e34fe1.
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* gnu/packages/perl.scm (perl)[inputs]: Add COREUTILS-MINIMAL.
[arguments]: Unconditionally patch /bin/pwd in Cwd.pm. While at it, remove
trailing #t's.
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...and avoid an upcoming circular dependency on Perl.
* gnu/packages/base.scm (coreutils-minimal)[native-inputs]: Empty field.
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* gnu/packages/perl.scm (perl)[native-inputs]: Update "perl-cross" to 1.3.6.
[arguments]: Remove obsolete patch.
* gnu/packages/patches/perl-cross.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
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* gnu/packages/perl.scm (perl): Update to 5.34.0.
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* gnu/packages/crypto.scm (rhash): Update to 1.4.2.
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* gnu/packages/crypto.scm (rhash)[arguments]: Turn into gexp, and use #$OUTPUT
instead of the %OUTPUT variable.
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* gnu/packages/base.scm (tzdata-for-tests): Update to 2021a.
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* gnu/packages/commencement.scm (python-boot0)[arguments]: Do not use
SUBSTITUTE-KEYWORD-ARGUMENTS to make it easier to change Python without a full
bootstrap.
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