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* gnu: methylkit: Use new home page.Tobias Geerinckx-Rice2017-11-11
| | | | * gnu/packages/bioinformatics.scm (methylkit)[home-page]: Update.
* gnu: vsearch: Update to 2.6.0.Ben Woodcroft2017-11-11
| | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.0.
* download: Work around bogus HTTP handling in Guile 2.2 <= 2.2.2.Ludovic Courtès2017-11-10
| | | | | | | | Reported by Konrad Hinsen <konrad.hinsen@fastmail.net> at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00070.html>. * guix/build/download.scm (write-request-line) [guile-2.2]: New procedure.
* gnu: webkitgtk: Update to 2.18.3 [fixes CVE-2017-{13788,13798,13803}].Leo Famulari2017-11-10
| | | | * gnu/packages/webkit.scm (webkitgtk): Update to 2.18.3.
* gnu: qemu: Fix CVE-2017-{15038,15268,15289}.Leo Famulari2017-11-10
| | | | | | | | * gnu/packages/patches/qemu-CVE-2017-15038.patch, gnu/packages/patches/qemu-CVE-2017-15268.patch, gnu/packages/patches/qemu-CVE-2017-15289.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/virtualization.scm (qemu)[source]: Use them.
* gnu: Fix hunspell-dict-en-* dictionary installation.Kei Kebreau2017-11-10
| | | | | * gnu/packages/aspell.scm (aspell-word-list)[arguments]: Install the .dic file for all hunspell dictionaries.
* gnu: cutadapt: Update to 1.14.Ricardo Wurmus2017-11-10
| | | | * gnu/packages/bioinformatics.scm (cutadapt): Update to 1.14.
* gnu: synergy: Fix minor problems with the package definitions.Ricardo Wurmus2017-11-10
| | | | | | | * gnu/packages/synergy.scm (synergy)[source]: Return #t in the snippet. [arguments]: Let build phases return #t; fix typo in comment. [home-page]: Change to redirection target. [description]: Fix typo.
* gnu: password-store: Install passmenu script.Jelle Licht2017-11-10
| | | | | | | * gnu/packages/password-utils (password-store) [inputs]: Add dmenu and xdotool. [arguments]<#:phases>['patch-passmenu-path']: New phase. [arguments]<#:phases>['install-passmenu']: New phase.
* gnu: Add Epson escpr printer driver.Diego Nicola Barbato2017-11-10
| | | | | | * gnu/packages/cups.scm (escpr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* git: Work around wrong default argument of 'clone'.Ludovic Courtès2017-11-10
| | | | | | | Fixes <https://bugs.gnu.org/29238>. Reported by Benjamin Andresen <benny@in-ulm.de>. * guix/git.scm (clone*): Pass second argument to 'clone'.
* gnu: postgresql@9.6: Update to 9.6.6 [security fixes].Efraim Flashner2017-11-10
| | | | | | This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099. * gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
* gnu: linux-libre: Update to 4.13.12.Mark H Weaver2017-11-09
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.12. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.61.Mark H Weaver2017-11-09
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.61.
* gnu: linux-libre@4.4: Update to 4.4.97.Mark H Weaver2017-11-09
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.97.
* gnu: linux-libre@4.1: Update to 4.1.46.Mark H Weaver2017-11-09
| | | | * gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.46.
* gnu: libpsl: Update to 0.19.1.Tobias Geerinckx-Rice2017-11-10
| | | | * gnu/packages/web.scm (libpsl): Update to 0.19.1.
* gnu: postgresql: Update to 10.1 [security fixes].Rutger Helling2017-11-10
| | | | | | | | Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099. * gnu/packages/databases.scm (postgresql): Update to 10.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* tests: Adjust to unbound-variable exception printer.Ludovic Courtès2017-11-10
| | | | | * tests/guix-system.sh: Adjust unbound-variable test for commit dc856223f5eab57d8a4881782ec0f50abd12afa3.
* gnu: Add r-directlabels.Kyle Meyer2017-11-09
| | | | | | * gnu/packages/statistics.scm (r-directlabels): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-ahungry-theme: Update to 1.8.0.Alex Vong2017-11-09
| | | | | | * gnu/packages/emacs.scm (emacs-ahungry-theme): Update to 1.8.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add nxbelld.Marek Benc2017-11-09
| | | | | | * gnu/packages/xdisorg.scm (nxbelld): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* ui: Add an 'unbound-variable' exception printer.Ludovic Courtès2017-11-09
| | | | | * guix/ui.scm (print-unbound-variable-error): New variable. Use it as the 'unbound-variable' printer.
* ui: Provide hints for unbound-variable errors.Ludovic Courtès2017-11-09
| | | | | * guix/ui.scm (known-variable-definition): New procedure. (report-load-error): Handle 'unbound-variable'.
* ui: Add 'display-hint'.Ludovic Courtès2017-11-09
| | | | | * guix/ui.scm (known-variable-definition): New procedure. (report-load-error): Use it.
* gnu: %intel-compatible-systems: Re-add variable.Efraim Flashner2017-11-09
| | | | | | This is a follow-up to cfbe7b7f4ccdb61534b47d91fe8e43db2ee1737d. * gnu/packages/linux.scm (%intel-compatible-systems): New variable.
* gnu: linux: Add linux-libre arm kernel.Mathieu Othacehe2017-11-09
| | | | | | | | | | | * Makefile.am (AUX_FILES): Add arm config file. * gnu/packages/aux-files/linux-libre/4.13-arm.conf: New file. * gnu/packages/linux.scm (%intel-compatible-systems): Rename to %linux-compatible-systems and add "armhf-linux". (linux-libre): Adapt consequently. The config file for arm is taken from debian armmp kernel. It's a generic firmware for ARMv7 multiplatform compatible SoCs.
* gnu: chromaprint: Update to 1.4.2.Leo Famulari2017-11-09
| | | | * gnu/packages/mp3.scm (chromaprint): Update to 1.4.2.
* gnu: libwnck: Update to 3.24.1.Kei Kebreau2017-11-09
| | | | * gnu/packages/gnome.scm (libwnck): Update to 3.24.1.
* system: Do not set 'TZ'.Ludovic Courtès2017-11-09
| | | | | | | Fixes <https://bugs.gnu.org/29212>. Reported by Diego Nicola Barbato <dnbarbato@posteo.de>. * gnu/system.scm (operating-system-environment-variables): Remove "TZ".
* gnu: roary: Update to 3.11.0.Ben Woodcroft2017-11-09
| | | | | * gnu/packages/bioinformatics.scm (roary): Update to 3.11.0. [inputs]: Add perl-digest-md5-file.
* gnu: totem: Enable parallel build.Kei Kebreau2017-11-08
| | | | | * gnu/packages/gnome.scm (totem)[arguments]: Set #:parallel-build? to #t implicitly.
* gnu: tremc: Update to 0.9.0-1.9755b50.Leo Famulari2017-11-08
| | | | | | * gnu/packages/bittorrent.scm (tremc): Update to 0.9.0-1.9755b50. [version]: Use git-version. [source]: Use git-file-name.
* gnu: slurm: Update to 16.05.11 [fixes CVE-2017-15566].Leo Famulari2017-11-08
| | | | | * gnu/packages/parallel.scm (slurm): Update to 16.05.11. [source]: Use the recommended download URL.
* gnu: rpm: Update to 4.13.0.2 [fixes CVE-2017-{7500,7501}].Leo Famulari2017-11-08
| | | | * gnu/packages/package-management.scm (rpm): Update to 4.13.0.2.
* gnu: python-icalendar: Update to 4.0.0.Leo Famulari2017-11-08
| | | | * gnu/packages/python.scm (python-icalendar): Update to 4.0.0.
* gnu: syncthing: Update to 0.14.40.Leo Famulari2017-11-08
| | | | | * gnu/packages/syncthing.scm (syncthing): Update to 0.14.40. [inputs]: Add go-github-com-zillode-notify.
* gnu: Add go-github-com-zillode-notify.Leo Famulari2017-11-08
| | | | * gnu/packages/syncthing.scm (go-github-com-zillode-notify): New variable.
* gnu: go-github-com-audriusbutkevicius-kcp-go: Update to 0.0.0-1.8ae5f52.Leo Famulari2017-11-08
| | | | | | * gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-kcp-go): Update to 0.0.0-1.8ae5f52. [propagated-inputs]: Add go-github-com-tjfoc-gmsm-sm4.
* gnu: Add go-github-com-tjfoc-gmsm-sm4.Leo Famulari2017-11-08
| | | | * gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): New variable.
* gnu: Improve error reporting of the use-.*modules macros.Ludovic Courtès2017-11-08
| | | | | | | | | | | Suggested by Julien Lepiller and myglc2 at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00106.html>. * gnu.scm (%try-use-modules): New procedure. (package-module-hint, service-module-hint): New procedures. (try-use-modules): New macro. (use-package-modules, use-service-modules, use-system-modules): Use it. * tests/guix-system.sh: Test it.
* services: Add 'lookup-service-types'.Ludovic Courtès2017-11-08
| | | | | * gnu/services.scm (lookup-service-types): New procedure. * tests/services.scm ("lookup-service-types"): New test.
* services: 'fold-service-types' includes (gnu services).Ludovic Courtès2017-11-08
| | | | | * gnu/services.scm (all-service-modules): New procedure. (fold-service-types): Use it for the default MODULES value.
* services: 'fold-service-types' honors its seed.Ludovic Courtès2017-11-08
| | | | * gnu/services.scm (fold-service-types): Use SEED instead of '().
* ui: Define and honor '&error-location' and '&fix-hint' conditions.Ludovic Courtès2017-11-08
| | | | | | * guix/utils.scm (&error-location, &fix-hint): New condition types. * guix/ui.scm (report-load-error): Handle them. (call-with-error-handling): Honor '&error-location'.
* ui: Introduce (guix i18n).Ludovic Courtès2017-11-08
| | | | | | * guix/ui.scm (G_, N_, _P, %gettext-domain, %package-text-domain): Move to... * guix/i18n.scm: ... here. New file.
* gnu: service: Update comment.Hartmut Goebel2017-11-08
| | | | * gnu/services/base.scm (guix-activation): Update comment.
* install: Use overlayfs instead of unionfs.Hartmut Goebel2017-11-08
| | | | | | | | | | | | | | I dediced to keep adding /tmp as tmpfs since I was not able to trigger bug while still using unionfs, so I could not verify whether this mount is still needed with overlayfs. Mapping /tmp to tmpfs does not harm, so we are on the save side. * gnu/system/install.scm (make-cow-store): Mount /gnu/store without additional read-only bind-mount, since in overlayfs the "lower" level is always read-only. Add work-dir required by overlayfs. No need to sleep anymore since now using the mount syscall. [unionfs]: Remove now unused function. (%installation-services): Update comment. (installation-os)[file-systems]: Update comment.
* build: Use overlayfs instead of unionfs.Hartmut Goebel2017-11-08
| | | | | | | | | | | | | | Overlayfs is part of the kernel, while unionfs needs FUSE. This also reduces the size of the initrd by ca. 4.3% (487K). * gnu/build/linux-boot.scm (mount-root-file-system): Remove optional parameter "unionfs"; mount using overlayfs instead of unionfs; new directory layout requied by overlayfs; update documentation. [mark-as-not-killable]: Remove now unused function * gnu/system/linux-initrd.scm (file-system-packages): Remove now unused packages "unionfs-fuse/static" and thus unused related 'if'. (linux-modules): Replace "fuse" by "overlay".
* gnu: miso: Use pypi-uri.Ricardo Wurmus2017-11-08
| | | | * gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
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