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* copy: Add '--verbosity'.Ludovic Courtès2019-01-14
| | | | | | | | | | | | | This fixes a regression introduced in f1de676ea82c2bed9a435fce37ade0186296bfc9 since %DEFAULT-OPTIONS was missing the 'debug key that 'set-build-options-from-command-line' expects. * guix/scripts/copy.scm (show-help, %options): Add '--verbosity'. (%default-options): Rename 'verbosity' to 'debug'. Add 'print-build-trace?', 'print-extended-build-trace?', 'multiplexed-build-output?', and 'verbosity'. (guix-copy): Wrap body in 'with-status-verbosity'.
* gnu: guile-ssh: Use 'git-fetch'.Ludovic Courtès2019-01-14
| | | | * gnu/packages/ssh.scm (guile-ssh)[source]: Change to 'git-fetch'.
* gnu: libssh: Update to 0.8.6.Ludovic Courtès2019-01-14
| | | | | | | | | * gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (libssh): Update to 0.8.6. [source](patches): Remove. [arguments]: Add #:phases. (guile-ssh)[source](modules, snippet]: New fields.
* gnu: guile-json: Add 3.1.0.Ludovic Courtès2019-01-14
| | | | * gnu/packages/guile.scm (guile-json-3): New variable.
* pull: Don't prepend "origin/" to branch names.Ludovic Courtès2019-01-14
| | | | | | | This is a followup to 37a6cdbf1b3503d3e60840a176318284b1f7ca25. * guix/scripts/pull.scm (%options): Don't prepend "origin/" to branch names.
* gnu: Move Perl compression packages to new module.Ricardo Wurmus2019-01-14
| | | | | | | | | | * gnu/packages/compression.scm (perl-compress-raw-bzip2, perl-compress-raw-zlib, perl-io-compress, perl-archive-zip, perl-archive-extract): Move from here... * gnu/packages/perl-compression.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ci.scm, gnu/packages/libreoffice.scm, gnu/packages/perl.scm: Adjust references.
* gnu: texlive-latex-fontspec: Propagate l3packages.Ricardo Wurmus2019-01-14
| | | | | | * gnu/packages/tex.scm (texlive-latex-fontspec)[inputs]: Remove texlive-latex-l3kernel. [propagated-inputs]: Add texlive-latex-l3packages.
* gnu: texlive-latex-l3packages: Propagate l3kernel.Ricardo Wurmus2019-01-14
| | | | | | * gnu/packages/tex.scm (texlive-latex-l3packages)[inputs]: Move texlive-latex-l3kernel from here... [propagated-inputs]: ...to here.
* gnu: Add texlive-latex-changepage.Ricardo Wurmus2019-01-14
| | | | * gnu/packages/tex.scm (texlive-latex-changepage): New variable.
* gnu: Add texlive-generic-babel-german.Ricardo Wurmus2019-01-14
| | | | * gnu/packages/tex.scm (texlive-generic-babel-german): New variable.
* gnu: texlive-latex-base: Install configuration files.Ricardo Wurmus2019-01-14
| | | | | | | * gnu/packages/tex.scm (texlive-latex-base)[arguments]: Install all configuration files. [native-inputs]: Move texlive-generic-hyph-utf8 from here... [propagated-inputs]: ...to here.
* gnu: opencv: Use 'git-fetch'.Efraim Flashner2019-01-14
| | | | | | | | * gnu/packages/image-processing.scm (opencv)[source]: Use 'git-fetch'. [native-inputs]: Use 'git-fetch' for opencv_extras and opencv_contrib. Remove unzip. [arguments]: Update custom 'unpack-submodule-sources accordingly. Update paths in configure-flags, 'diable-broken-tests phase.
* gnu: python-django-filter: Use 'invoke'.Efraim Flashner2019-01-14
| | | | | * gnu/packages/django.scm (python-django-filter)[arguments]: Use 'invoke'.
* gnu: opencv: Loosen test suite failures.Efraim Flashner2019-01-14
| | | | | | | | * gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch to opencv-contrib. [arguments]: Update 'unpack-submodule-sources phase. * gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: opencv: Update configure flags.Efraim Flashner2019-01-14
| | | | | * gnu/packages/image-processing.scm (opencv)[arguments]: Don't use precompiled headers. Enable all available CPU optimizations.
* gnu: opencv: Don't hardcode build directories.Efraim Flashner2019-01-14
| | | | | | * gnu/packages/image-processing.scm (opencv)[arguments]: Change OPENCV_EXTRA_MODULES_PATH and OPENCV_TEST_DATA_PATH to use 'getcwd' instead of hardcoding the build path.
* gnu: opencv: Fix building on non-x86_64 systems.Efraim Flashner2019-01-14
| | | | | | * gnu/packages/image-processing.scm (opencv)[arguments]: Add configure-flag to disable carotene. Don't require x86_64 CPU except on x86_64. Fix typo.
* gnu: gnurl: Update to 7.63.0.Efraim Flashner2019-01-14
| | | | * gnu/packages/gnunet.scm (gnurl): Update to 7.63.0.
* gnu: emacs-pass: Update to 1.8.Clément Lassieur2019-01-14
| | | | * gnu/packages/emacs.scm (emacs-pass): Update to 1.8.
* gnu: dosbox: Update to 0.74-2.Rutger Helling2019-01-14
| | | | | * gnu/packages/emulators.scm (dosbox): Update to 0.74-2. [arguments]: Use invoke in 'autogen.sh phase.
* gnu: linux-libre: Update to 4.20.2.Mark H Weaver2019-01-14
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.2. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.15.Mark H Weaver2019-01-14
| | | | | * gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.15. (%linux-libre-4.19-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.93.Mark H Weaver2019-01-14
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.93. (%linux-libre-4.14-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.150.Mark H Weaver2019-01-14
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.150.
* gnu: linux-libre@4.4: Update to 4.4.170.Mark H Weaver2019-01-14
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.170.
* gnu: Add ocaml-merlin.Gabriel Hondet2019-01-13
| | | | | | * gnu/packages/ocaml.scm (ocaml-merlin): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-tldr.Gabriel Hondet2019-01-13
| | | | | | * gnu/packages/emacs.scm (emacs-tldr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* system: Add sudoedit to %setuid-programs.Meiyo Peng2019-01-13
| | | | | | * gnu/system.scm (%setuid-programs): Add sudoedit. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-miniboa.Christopher Baines2019-01-13
| | | | | | python2-miniboa is required for the linkchecker testsuite. * gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
* gnu: python-pillow: Update to 5.4.1.Christopher Baines2019-01-13
| | | | | | | | I'm looking at this, as this release fixes an issue with the Django testsuite: https://github.com/python-pillow/Pillow/pull/3525 * gnu/packages/python.scm (python-pillow): Update to 5.4.1.
* gnu: r-biocgenerics: Move to bioconductor.Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here... * gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
* gnu: r-annotate: Move to bioconductor.Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/bioinformatics.scm (r-annotate): Move from here... * gnu/packages/bioconductor.scm (r-annotate): ...to here.
* gnu: r-vegan: Move from bioinformatics to cran.Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/bioinformatics.scm (r-vegan): Move from here... * gnu/packages/cran.scm (r-vegan): ...to here.
* gnu: conda: Use 'invoke'.Efraim Flashner2019-01-13
| | | | * gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
* gnu: python-conda: All phases return #t.Efraim Flashner2019-01-13
| | | | | * gnu/packages/package-management.scm (python-conda)[arguments]: Use 'invoke'.
* gnu: python-conda: Fix test suite.Efraim Flashner2019-01-13
| | | | | * gnu/packages/package-management.scm (python-conda)[native-inputs]: Add python-cytoolz.
* gnu: Add r-raster.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/cran.scm (r-raster): New variable.
* gnu: r-ggformula: Update to 0.9.1.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
* gnu: r-tibble: Update to 2.0.1.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
* gnu: r-psych: Update to 1.8.12.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/cran.scm (r-psych): Update to 1.8.12.
* gnu: bitshuffle: Fix build on armhf-linux.Efraim Flashner2019-01-13
| | | | | * gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase to only use NEON on aarch64.
* gnu: wine-staging: Update to 4.0-rc6.Rutger Helling2019-01-13
| | | | | * gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc6. * gnu/packages/wine.scm (wine-staging): Update to 4.0-rc6.
* gnu: Sort package module references in (gnu packages graphviz).Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/graphviz.scm: Sort package module references; delete duplicates.
* gnu: Add python-pygraphviz.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/graphviz.scm (python-pygraphviz): New variable.
* gnu: Add python-doctest-ignore-unicode.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
* gnu: Add graphviz-2.38.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/graphviz.scm (graphviz-2.38): New variable.
* gnu: sudo: Update to 1.8.27.Marius Bakke2019-01-13
| | | | * gnu/packages/admin.scm (sudo): Update to 1.8.27.
* gnu: libassuan: Update to 2.5.2.Marius Bakke2019-01-13
| | | | * gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
* gnu: libgxps: Update to 0.3.1.Marius Bakke2019-01-13
| | | | * gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
* gnu: libqmi: Update to 1.22.0.Marius Bakke2019-01-13
| | | | * gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
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