| Commit message (Collapse) | Author | Age |
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* guix/store.scm (%reference-cache): Remove.
(%reference-cache-id): New variable.
(references/cached): Rewrite in terms of it.
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This procedure lost its only user in commit
710854304b1ab29332edcb76f3de532e0724c197.
* guix/store.scm (references/substitutes): Remove.
* tests/store.scm ("references/substitutes missing reference info")
("references/substitutes with substitute info"): Remove.
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* guix/grafts.scm (reference-origins): Use SRFI-71 'let*'.
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* guix/grafts.scm (record-cache-lookup!): New procedure.
(with-cache): Use it.
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* guix/store.scm (cache-lookup-recorder): New procedure.
(record-cache-lookup!): Define in terms of it.
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* guix/store.scm (<store-connection>)[object-cache]: Remove.
[caches]: New field.
(open-connection, port->connection): Adjust '%make-store-connection'
calls accordingly.
(%store-connection-caches, %object-cache-id): New variables.
(allocate-store-connection-cache, vector-set)
(store-connection-cache, set-store-connection-cache)
(set-store-connection-caches!, set-store-connection-cache!): New
procedures.
(cache-object-mapping): Add #:cache parameter.
(set-store-connection-object-cache!): Remove.
(lookup-cached-object): Use 'store-connection-cache'.
(run-with-store): Use 'store-connection-caches' and
'set-store-connection-caches!'.
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The :prefix bit introduced in 9f59a9b4bc93b3ef6cd3bd1c9eed04c30ba2d2d4
led to a test failure in 'tests/graph.scm'.
* gnu/packages/pantheon.scm: Write #:prefix, not :prefix.
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* doc/guix.texi (Requirements): Update Guile-Git version.
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* etc/news.scm: Remove 'x' introduced by mistake in
dfdcd9d812d20a86babc4da8a01bc17e44900c3c.
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* gnu/packages/python-xyz.scm (python-mappy): Move to ...
* gnu/packages/bioinformatics.scm: ... here.
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* gnu/packages/jami.scm (jami): Update to 20210606.1.e2f9490.
(pjproject-jami)[0019-ignore-down-interfaces]: Apply new custom patch.
(jami-qt)[source]: Use %jami-sources, which now includes the Qt client.
[phases]{change-directory}: New phase.
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Before this change, there was a Jami origin containing the sources with the
patches, and another one containing the sources but with the patches removed.
Unify the source to always contain the patches, which adds just 1 MiB to the
corresponding tarball and simplifies things.
* gnu/packages/jami.scm (%jami-sources): Make it a simple variable. Move the
docstring to a comment. Only remove the tarballs, always keeping the patches
with the sources. Adjust the comments.
(%sfl-patches): Remove variable.
(jami-apply-dependency-patches): Rename to...
(jami-apply-custom-patches): ... this. Adjust the input label used to
'jami-sources'.
(pjproject-jami): Replace %sfl-patches by %jami-sources. Adjust following the
renaming of the jami-apply-custom-patches procedure.
(ffmpeg-jami): Likewise. Do not make a temporary binding, simply call the
unquoted jami-apply-custom-patches procedure.
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* gnu/packages/networking.scm (opendht): Update to 2.2.0rc7-1.c8a0b44.
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* gnu/packages/text-editors.scm (l3afpad): New variable.
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* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.17.
[arguments]: Remove "use-latest-salmon" phase; add "set-timezone" phase.
[inputs]: Replace r-gprofiler with r-gprofiler2; add r-ggpubr and
python-deeptools.
[native-inputs]: Add tzdata.
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* gnu/packages/text-editors.scm (ghostwriter): Update to 2.0.1.
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* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.12.2.
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* gnu/packages/messaging.scm (dino): Update to 0.2.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/qt.scm (qtwebengine)[inputs]: Add openh264.
[source]: Remove bundled openh264.
[arguments]: Adjust build scripts accordingly in the 'substitute-source' phase.
Pass '-webengine-proprietary-codecs' in the custom 'configure' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/video.scm (youtube-dl): Update to 2021.06.06.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
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* gnu/packages/mail.scm (isync): Update to 1.4.2.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
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* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase
"use-latest-salmon".
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* gnu/packages/bioinformatics.scm (salmon): Update to 1.4.0.
[arguments]: Remove unnecessary flags, add other soon-to-be-unnecessary flags;
remove "prepare-rapmap" phase, add "prepare-pufferfish" phase, add
"fix-error-message-in-tests" phase, simplify "use-system-libraries" phase.
[inputs]: Add curl and pufferfish sources; remove libdivsufsort and rapmap
sources.
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* gnu/packages/serialization.scm (cereal): Update to 1.3.0.
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* gnu/packages/bioinformatics.scm (macs): Update to 2.2.7.1.
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* gnu/packages/bioinformatics.scm (libgff): Update to 2.0.0.
[home-page]: Update to new home.
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* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.3.0.
[arguments]: Disable SSE to avoid tuning to the build node's CPU.
[native-inputs]: Replace python-2 with python-wrapper.
[license]: Update.
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* gnu/packages/lisp-xyz.scm (sbcl-fof): Update to 0.2.0.
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* etc/substitutes/bordeaux.guix.gnu.org.pub: New file.
* Makefile.am (dist_pkgdata_DATA): Add it.
* guix/self.scm (miscellaneous-files): Add
"share/guix/bordeaux.guix.gnu.org.pub".
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* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-31.4a47417.
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* gnu/packages/bioinformatics.scm (multiqc): Update to 1.10.1.
[arguments]: Remove build phase "relax-requirements"; replace "check" phase.
[propagated-inputs]: Add python-coloredlogs, python-future, python-networkx,
and python-rich; remove python-nose.
[native-inputs]: Add python-pytest and the test suite.
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* gnu/packages/python-xyz.scm (python-rich): New variable.
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* gnu/packages/python-xyz.scm (python-dataclasses): Update to 0.8.
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* gnu/packages/python-xyz.scm (python-attrs): Update to 21.2.0.
(python-attrs-bootstrap): Keep this at 19.3.0 to avoid mass rebuilds.
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* gnu/packages/python-xyz.scm (python-attrs)[arguments]: Wrap "check" phase in
conditional expression.
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* gnu/packages/bioinformatics.scm (python-hic2cool): Update to 0.8.3.
[source]: Download using git-fetch.
[arguments]: Enable tests. Add phase to make test data writable.
[propagated-inputs]: Add python-h5py, python-numpy, python-pandas,
python-scipy.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/gnome.scm (gtg): Update to 0.5.
[inputs]: Add gdk-pixbuf+svg, pango, python-lxml.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/irc.scm (srain): Update to 1.2.2.
[build-system]: Switch to meson-build-system.
[arguments]: Add #:glib-or-gtk?. Remove 'fix-permissions phase.
[native-inputs]: Add python-sphinx.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/xorg.scm (xf86-video-vesa): Update to 2.5.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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Fixes <https://issues.guix.gnu.org/issue/48890>.
* gnu/packages/xorg.scm (xpra): Update to 4.2.
[source]: Switch to ".tar.gz" archive and update patch file.
[native-inputs]: Add pandoc.
[arguments]: Adjust custom 'fix-paths phase for changes in source.
* gnu/packages/patches/xpra-4.2-systemd-run.patch: Adapt to new version
and rename file.
* gnu/local.mk (dist_patch_DATA): Rename file.
Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
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Fixes <https://bugs.gnu.org/48771>.
Reported by Eric Brown <ecbrown@ericcbrown.com>.
* gnu/packages/tls.scm (gnutls-3.6.16)[arguments]: New field.
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* gnu/packages/image.scm (libheif): Update to 1.12.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/finance.scm (homebank): Update to 5.5.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/ebook.scm (cozy): Update to 1.0.3.
[inputs]: Add granite, libgee.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/gnome.scm (drawing): Update to 0.8.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/cybersecurity.scm (pwntools): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* doc/contributing.texi (Version Numbers): Document ‘git-version’ and
‘hg-version’.
* doc/guix.texi (package Reference): Reference ‘Version Numbers’ section for
version naming guidelines.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/gnome.scm (komikku): Update to 0.29.1.
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* gnu/packages/shells.scm (dash): Update to 0.5.11.4.
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* gnu/packages/messaging.scm (pidgin): Update to 2.14.5.
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