| Commit message (Collapse) | Author | Age |
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* guix/scripts/deploy.scm (load-source-file): Enumerate and include all
submodules of (gnu machine) when loading the provided deployment
specification.
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* gnu/tests/reconfigure.scm (run-switch-to-system-test): Assert that
'/run/current-system' points to the activated system, and that new user
accounts specified in the operating system declaration are created.
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* gnu/packages/admin.scm (igt-gpu-tools)[arguments]: Use custom 'autogen
phase to replace 'bootstrap phase.
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* gnu/packages/emulators.scm (dosbox)[arguments]: Remove unneeded
'autogen phase.
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* gnu/packages/image.scm (zimg)[arguments]: Remove unneeded 'autogen
phase.
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* gnu/packages/image.scm (leptonica)[arguments]: Remove unneeded
'autogen phase.
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* gnu/packages/machine-learning.scm (ghmm)[arguments]: Remove unneeded
'autogen phase.
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* gnu/packages/machine-learning.scm (ghmm)[source]: Change 'file-name
field to include '-checkout' string.
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* gnu/packages/mail.scm (dovecot-libsodium-plugin)[arguments]: Remove
unneeded 'autogen phase.
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* gnu/packages/mail.scm (dovecot-trees)[arguments]: Remove unneeded
'autogen phase.
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* gnu/packages/mail.scm (libetpan)[arguments]: Use custom 'autogen phase
to replace 'boostrap phase.
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* gnu/packages/video.scm (libmediainfo)[arguments]: Remove unneeded
'autogen phase.
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* gnu/packages/video.scm (libsmpeg)[arguments]: Remove unnecessary
'autogen phase.
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* gnu/packages/video.scm (vapoursynth)[arguments]: Remove unneeded
'autogen phase.
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* gnu/packages/wm.scm (i3blocks)[arguments]: Remove unneeded 'autogen
phase.
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* gnu/packages/vpn.scm (ocproxy)[arguments]: Remove unneeded 'autogen
phase.
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* gnu/packages/vpn.scm (openconnect)[inputs]: Move libxml2, gnutls,
zlib ...
[propagated-inputs]: ... to here.
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Fixes <https://bugs.gnu.org/35761>.
* gnu/packages/geo.scm (gnome-maps)[arguments]: Add lib output of
gnome-online-accounts and geocode-glib to LD_LIBRARY_PATH.
[inputs]: Add gnome-online-accounts:lib.
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* gnu/packages/statistics.scm (r-dt): Update to 0.8.
[propagated-inputs]: Add r-jsonlite.
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* gnu/packages/cran.scm (r-epi): Update to 2.38.
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* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.2.
[propagated-inputs]: Add r-rlang.
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* gnu/packages/cran.scm (r-tinytex): Update to 0.15.
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* gnu/packages/cran.scm (r-servr): Update to 0.15.
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* gnu/packages/emulators.scm (dolphin-emu): Update to commit 24718c1.
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* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.7.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.65.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
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* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.137.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
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* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.188.
(linux-libre-4.9-pristine-source)[hash]: Update hash.
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* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.188.
(linux-libre-4.4-pristine-source)[hash]: Update hash.
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* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.4.
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* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.5.
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* gnu/machine/ssh.scm (machine-check-file-system-availability)
(machine-check-initrd-modules, check-deployment-sanity): New variable.
(deploy-managed-host): Perform safety checks before deploying.
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Fixes <https://bugs.gnu.org/36942>.
Reported by ison <ison@airmail.cc>.
guix/scripts/system/reconfigure.scm (install-bootloader-program): Switch
new symlink to the canonical bootloader configuration file.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
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* gnu/machine.scm (machine-system): Delete variable.
(machine-operating-system): New variable.
All callers changed.
* doc/guix.texi (Invoking guix deploy): Use the
'machine-operating-system' accessor rather than 'machine-system'.
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* doc/guix.texi (Invoking guix deploy): Add note explaining that
deployment targets must authorize the coordinator machine's signing key.
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Clone::Choose is required at runtime, so this input needs to be
propagated. This change fixes the sqitch package.
* gnu/packages/perl.scm (perl-hash-merge)[inputs]: Change to
propagated-inputs.
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* gnu/packages/video.scm (ffmpeg): Update to 4.2.
[inputs]: Add dav1d.
* gnu/packages/video.scm (ffmpeg-3.4)[arguments]: Adjust inheritance.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.6.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.5.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.2.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.1.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.4.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.2.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.1.
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* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.3.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.6.
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