| Commit message (Collapse) | Author | Age |
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* guix/download.scm (%content-addressed-mirrors): Add Software
Heritage.
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* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.12.0.
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* gnu/packages/mtools.scm (mtools): Update to 4.0.20.
[source](uri): Change to 'bz2' compressed tarball.
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* gnu/packages/nano.scm (nano): Update to 3.2.
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* gnu/packages/admin.scm (sudo): Update to 1.8.26.
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* gnu/packages/image-viewers.scm (feh): Update to 3.0.
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* gnu/packages/bioinformatics.scm (jamm): New variable.
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* gnu/packages/cran.scm (r-ouch): New variable.
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* gnu/packages/cran.scm (r-activity): New variable.
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* gnu/packages/cran.scm (r-circular): New variable.
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* gnu/packages/cran.scm (r-overlap): New variable.
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* gnu/packages/cran.scm (r-acdm): New variable.
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* gnu/packages/cran.scm (r-acd): New variable.
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* gnu/packages/cran.scm (r-abn): New variable.
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* gnu/packages/cran.scm (r-rjags): New variable.
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* gnu/packages/statistics.scm (jags): New variable.
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* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.4.
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* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.2.0.
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Fixes <https://bugs.gnu.org/33346>.
* gnu/packages/spice.scm (spice-vdagent)[arguments]: Fix typo in
'patch-spice-vdagent.desktop' phase.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-14.
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* gnu/packages/ssh.scm (libssh)[source]: Use HTTPS URL.
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* gnu/packages/shellutils.scm (direnv)[native-inputs]: Remove go.
[inputs]: Add go-1.9.
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* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
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* gnu/packages/tls.scm (certbot, python-acme): Update to 0.28.0.
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* gnu/packages/package-management.scm (guix): Update to f5a2724.
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Fixes <https://bugs.gnu.org/33361>.
* guix/store/deduplication.scm (replace-with-link): Call 'set-file-time'
and 'chmod' after 'rename-file'.
* tests/nar.scm ("restore-file-set with directories (signed, valid)"):
New test.
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* guix/tests.scm (canonical-file?): New procedure.
* tests/nar.scm ("restore-file-set (signed, valid)"): Check that every
item of FILES matches 'canonical-file?'.
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* tests/nar.scm: Remove test for 'open-sha256-input-port'.
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* gnu/services/base.scm (nscd-action-procedure, nscd-actions): New
procedures.
(nscd-shepherd-service): Add 'modules' and 'actions' fields.
* gnu/tests/base.scm (run-basic-test)["nscd invalidate action"]
["nscd invalidate action, wrong table"]: New tests.
* doc/guix.texi (Services): Mention 'herd doc nscd action'.
(Base Services): Document the actions.
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* gnu/services/mcron.scm (shepherd-schedule-action): Fix typo in comment.
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* guix/store/database.scm (%default-database-file): New variable.
(path-id): Export.
* guix/nar.scm (finalize-store-file): Use 'with-database' instead of
'with-store', and use 'path-id' instead of 'valid-path?'.
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* gnu/packages/backup.scm (restic)[arguments]: Set "HOME" environment variable
in build phase.
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* gnu/packages/messaging.scm (c-toxcore)[source]: Fetch from git.
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* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.20.
* gnu/packages/wine.scm (wine-staging): Update to 3.20.
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* gnu/packages/php.scm (php): Update to 7.2.12.
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This leads to ~25% improvements on things like:
guix system build desktop.tmpl --no-grafts -d
* guix/store.scm (<nix-server>)[object-cache]: New field.
* guix/store.scm (open-connection): Initialize it.
(cache-object-mapping, lookup-cached-object, %mcached): New procedures.
(mcached): New macro.
* guix/gexp.scm (lower-object): Use it.
* guix/grafts.scm (grafting?): New procedure.
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* guix/tests.scm (test-assertm): New macro.
* tests/gexp.scm (test-assertm): Remove.
* tests/profiles.scm (test-assertm): Remove.
* tests/challenge.scm (%store, test-assertm): Remove.
* tests/debug-link.scm (%store, test-assertm): Remove.
* tests/size.scm (%store, test-assertm): Remove.
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* gnu/packages/video.scm (youtube-dl): Update to 2018.11.07.
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* gnu/packages/vim.scm (vifm): Update to 0.10.
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* gnu/packages/golang.scm (go-github-com-aarzilli-golua)[arguments]: Fix for go-1.11.
[native-inputs]: Remove lua.
[propagated-inputs]: Add lua.
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* gnu/packages/golang.scm (go-github-com-wtolson-go-taglib)[arguments]: Fix tests for go-1.11.
[native-inputs]: Remove pkg-config and taglib.
[propagated-inputs]: Add pkg-config and taglib.
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* gnu/packages/syncthing.scm (go-gopkg.in-asn1-ber.v1): Fix tests for go-1.11.
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* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-cli): Fix tests for go-1.11.
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* gnu/packages/syncthing.scm (go-github-com-prometheus-common-expfmt): Fix tests for go-1.11.
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