| Commit message (Collapse) | Author | Age |
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* gnu/packages/android.scm (android-platform-version): Use "7.1.2_r36".
(android-platform-system-core): Update sha256 hash value (for 7.1.2_r36).
(android-platform-bionic): Update sha256 hash value (for 7.1.2_r36).
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* gnu/packages/python.scm (python-tblib)[arguments]<#:phases>[check]: Use
invoke.
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* gnu/packages/mono.scm (mono)[arguments]<#:phases>[fix-includes]: New phase.
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* gnu/packages/music.scm (ams-lv2)[arguments]: Use '(unless' instead of
'(when (not'. Return with #t as last value from phase 'remove-sse-flags'.
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Python 3.7 introduced PEP 479. That raised an error in an old waf-script
included in the package. An updated waf-script was found in a
newer commit that fixes the problem.
* gnu/packages/music.scm (ams-lv2)[sources]: Update, using two more commits
than version 1.2.1.
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* gnu/packages/patches/aegisub-boost68.patch: New file
* gnu/local.mk: Add it.
* gnu/packages/video.scm (aegisub)[source]: Use patch.
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* gnu/packages/patches/randomjungle-disable-static-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/machine-learning.scm (randomjungle)[source](patches): Add it.
[arguments]: Add "--disable-static" to #:configure-flags.
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* gnu/packages/python.scm (python-gevent)[arguments]: Add (ice-9 match)
to #:modules. In 'do-not-use-bundled-sources' phase, use 'scandir' to
avoid hard-coded include directory name.
[properties]: New field.
(python2-gevent): Add 'native-inputs' and 'arguments' fields.
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* gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add two patches
from Arch Linux.
[arguments]: Add substitutions so the libraries are found.
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* gnu/packages/libreoffice.scm (libetonyek)[arguments]: Add phase to
substitute mdds version. Adjust #:configure-flags accordingly.
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* gnu/packages/libreoffice.scm (orcus): Update to 0.14.1.
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* gnu/packages/libreoffice.scm (ixion): Update to 0.14.1.
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* gnu/packages/boost.scm (mdds): Update to 1.4.3.
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Also remove other native-inputs since they appear unnecessary.
* gnu/packages/python.scm (python2-numpy-1.8)[native-inputs]: New field.
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* gnu/packages/package-management.scm (diffoscope): Update to 106.
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* gnu/packages/package-management.scm (diffoscope)[arguments]: Remove
failing Berkeley DB test.
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* gnu/packages/python.scm (python-pika): Update to 0.12.0.
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* gnu/packages/bioinformatics.scm (bless)[inputs]: Add ZLIB:STATIC.
[arguments]: Adjust #:make-flags accordingly.
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* gnu/packages/android.scm (adb)[arguments]: Add phase 'glibc-compat'.
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* gnu/packages/python.scm (python-fasteners)[properties]: New field.
(python2-fasteners)[propagated-inputs]: Add PYTHON2-FUTURES.
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* gnu/packages/python.scm (python2-futures): Update to 3.2.0.
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* gnu/packages/python.scm (python2-futures)[arguments]: Set #:test? #f.
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* gnu/packages/python-web.scm (python-pycurl)[arguments]: Add phase
'configure-tls-backend'.
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* gnu/packages/finance.scm (ledger)[arguments]: Add phase 'boost-compat.
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* gnu/packages/bioinformatics.scm (mosaik)[inputs]: Add ZLIB:STATIC.
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* gnu/packages/python.scm (python2-cheetah): Rename to ...
(python-cheetah): ... this. Update to 3.1.0.
[arguments]: Add custom 'check' phase.
[propagated-inputs]: Change PYTHON2-MARKDOWN to PYTHON-MARKDOWN.
(python2-cheetah): Rewrite in terms of PACKAGE-WITH-PYTHON2.
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* gnu/packages/python.scm (python-cheetah)[home-page]: Update to current.
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* gnu/packages/rust.scm (rust-1.19)[inputs]: Remove GIT.
(rust-1.20)[arguments]: Disable Cargo tests that require git.
(rust-1.26)[arguments]: Likewise.
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This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156,
and CVE-2018-3251. See
<https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details.
* gnu/packages/databases.scm (mariadb): Update to 10.1.37.
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* gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of
'system*'. Add 'mpi-setup' phase.
(pt-scotch32)[arguments]: Likewise.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4
with snakemake.
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* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4
with snakemake.
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* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4
with snakemake.
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* gnu/packages/python.scm (python-gevent): Update to 1.3.7.
[arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources".
[propagated-inputs]: Add python-objgraph.
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* gnu/packages/python.scm (python-objgraph): New variable.
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* gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove
python-typing.
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* gnu/packages/patches/podofo-cmake-3.12.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (podofo)[source]: Add patch.
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* gnu/packages/audio.scm (jalv)[arguments]: Build with python-2.
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* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1.
[source](patches): Remove.
[arguments]: Skip network tests with pytest instead of deleting files. Make
sure $HOME is writable.
(python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
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* gnu/packages/python.scm (python-tblib)[arguments]: Add 'adjust-tests' phase.
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* gnu/packages/python.scm (python-numpy): Update to 1.15.4.
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* gnu/packages/c.scm (libbytesize)[sources](modules, snippet): New
fields.
[arguments]: Add #:configure-flags and #:phases.
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* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file.
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Switch to
GIT-FETCH.
[arguments]: In 'emacs-patch-variables' phase, make files writable.
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* gnu/packages/patches/casync-renameat2-declaration.patch: New file.
* gnu/packages/sync.scm (casync)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/fltk.scm (ntk)[inputs]: Add python-waf.
[arguments]: Add custom phase to replace vendored waf.
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