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* system: Rename 'disk-image' command 'image'.Mathieu Othacehe2021-01-19
| | | | | | | | | | | | | * guix/scripts/system.scm (system-derivation-for-action): Rename 'disk-image' command 'image'. Warn when using the now deprecated 'disk-image' command. (show-help): Adapt accordingly. (guix-system): Ditto. * tests/guix-system.sh: Ditto. * gnu/system/examples/bare-hurd.tmpl: Ditto. * doc/guix.texi (Building the Installation Image, Building the Installation Image for ARM Boards, Invoking guix pack, Invoking guix system): Adapt documentation.
* gnu: terminology: Update to 1.9.0.Efraim Flashner2021-01-19
| | | | | * gnu/packages/enlightenment.scm (terminology): Update to 1.9.0. [arguments]: Add configure-flag to find more binaries.
* doc: Fix typo.Joshua C. Randall2021-01-19
| | | | | | | | Fixes <http://bugs.gnu.org/35004>. * doc/guix.texi (Invoking guix package): Fix typo. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
* gnu: freebayes: Update source, home-page URIs.Efraim Flashner2021-01-19
| | | | | | * gnu/packages/bioinformatics.scm (freebayes)[source]: Update to new upstream URI. [home-page]: Same.
* gnu: terminator: Adjust description.Efraim Flashner2021-01-19
| | | | * gnu/packages/gnome.scm (terminator)[description): Remove stray '+'.
* gnu: freebayes: Don't include vcflib sources.Efraim Flashner2021-01-19
| | | | | | | | | * gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Remove vcflib-source, intervaltree-source. Move vcflib ... [inputs]: ... to here. [arguments]: Adjust 'patch-source and 'unpack-submodule-sources for changes in vendored code. * gnu/packages/patches/freebayes-devendor-deps.patch: Update patch.
* gnu: vcflib: Add pkg-config file.Efraim Flashner2021-01-19
| | | | | * gnu/packages/bioinformatics.scm (vcflib)[arguments]: Add phase to create pkg-config file.
* gnu: vcflib: Build a shared library.Efraim Flashner2021-01-19
| | | | | * gnu/packages/bioinformatics.scm (vcflib)[arguments]: Add phase to build a shared library instead of a static one.
* gnu: freebayes: Extend test timeout on slower architectures.Efraim Flashner2021-01-19
| | | | | * gnu/packages/bioinformatics.scm (freebayes)[arguments]: Use custom 'check phase on aarch64-linux and armhf-linux to extend the test timeout.
* gnu: xpra: Add more encoding options.Michael Rohleder2021-01-19
| | | | | | * gnu/packages/xorg.scm (xpra)[inputs]: Add libx264, x265, libvpx. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: xpra: Update to 4.0.6.Michael Rohleder2021-01-19
| | | | | | * gnu/packages/xorg.scm (xpra): Update to 4.0.6. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: libid3tag: Add comment justifying the 'install-pkg-config phase.Kei Kebreau2021-01-18
| | | | | * gnu/packages/mp3.scm (libid3tag)[arguments]: Add a comment about Audacity requiring a pkg-config file for libid3tag.
* gnu: libmad: Add comment justifying the 'install-pkg-config phase.Kei Kebreau2021-01-18
| | | | | * gnu/packages/mp3.scm (libmad)[arguments]: Add a comment about Audacity requiring a pkg-config file for libmad.
* gnu: Add guile-libyaml.Ricardo Wurmus2021-01-18
| | | | * gnu/packages/guile-xyz.scm (guile-libyaml): New variable.
* gnu: Add r-snapatac.Mădălin Ionel Patrașcu2021-01-18
| | | | * gnu/packages/bioinformatics.scm (r-snapatac): New variable.
* gnu: mafft: Update to 7.475.Mădălin Ionel Patrașcu2021-01-18
| | | | | | * gnu/packages/bioinformatics.scm (mafft): Update to 7.475. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: musl: Update to 1.2.2.Vincent Legoll2021-01-18
| | | | | | * gnu/packages/musl.scm (musl): Update to 1.2.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: ruby-bio-vcf: Rename to bio-vcf.Efraim Flashner2021-01-18
| | | | | | This package is widely known in select circles specifically as 'bio-vcf'. * gnu/packages/bioinformatics.scm (ruby-bio-vcf): Rename to bio-vcf.
* gnu: Add ruby-bio-vcf.Efraim Flashner2021-01-18
| | | | * gnu/packages/bioinformatics.scm (ruby-bio-vcf): New variable.
* gnu: linux-libre 4.4: Update to 4.4.252.Leo Famulari2021-01-18
| | | | | * gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.252. (linux-libre-4.4-pristine-source): Update hash.
* gnu: linux-libre 4.9: Update to 4.9.252.Leo Famulari2021-01-18
| | | | | * gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.252. (linux-libre-4.9-pristine-source): Update hash.
* gnu: linux-libre 4.14: Update to 4.14.216.Leo Famulari2021-01-18
| | | | | * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.216. (linux-libre-4.14-pristine-source): Update hash.
* gnu: linux-libre 4.19: Update to 4.19.168.Leo Famulari2021-01-18
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.168. (linux-libre-4.19-pristine-source): Update hash.
* gnu: linux-libre 5.4: Update to 5.4.90.Leo Famulari2021-01-18
| | | | | * gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.90. (linux-libre-5.4-pristine-source): Update hash.
* gnu: linux-libre: Update to 5.10.8.Leo Famulari2021-01-18
| | | | | * gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.8. (linux-libre-5.10-pristine-source): Update hash.
* gnu: xapian, python-xapian-bindings: Update to 1.4.18.Tobias Geerinckx-Rice2021-01-18
| | | | * gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.18.
* gnu: iptables: Update to 1.8.7.Tobias Geerinckx-Rice2021-01-18
| | | | * gnu/packages/linux.scm (iptables): Update to 1.8.7.
* gnu: nftables: Update to 0.9.8.Tobias Geerinckx-Rice2021-01-18
| | | | * gnu/packages/linux.scm (nftables): Update to 0.9.8.
* gnu: libnftnl: Update to 1.1.9.Tobias Geerinckx-Rice2021-01-18
| | | | * gnu/packages/linux.scm (libnftnl): Update to 1.1.9.
* gnu: ktouch: Update to 20.12.1.Tobias Geerinckx-Rice2021-01-18
| | | | * gnu/packages/education.scm (ktouch): Update to 20.12.1.
* gnu: wxmaxima: Update to 20.12.2.Kei Kebreau2021-01-17
| | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 20.12.2. [arguments]: Remove #:test-target and disable tests. Remove 'pre-check phase. [native-inputs]: Remove xorg-server-for-tests. [inputs]: Add libomp.
* gnu: gnuplot: Update to 5.4.1.Kei Kebreau2021-01-17
| | | | | * gnu/packages/maths.scm (gnuplot): Update to 5.4.1. [arguments]: Set GNUTERM in #:make-flags.
* gnu: Add emacs-org-mimeRyan Desfosses2021-01-17
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-org-mime): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: nbd: Update to 3.21.Tobias Geerinckx-Rice2021-01-17
| | | | * gnu/packages/networking.scm (nbd): Update to 3.21.
* gnu: mblaze: Update to 1.1.Tobias Geerinckx-Rice2021-01-17
| | | | * gnu/packages/mail.scm (mblaze): Update to 1.1.
* gnu: keepassxc: Update to 2.6.3.Tobias Geerinckx-Rice2021-01-17
| | | | * gnu/packages/password-utils.scm (keepassxc): Update to 2.6.3.
* gnu: facter: Update to 4.0.49.Tobias Geerinckx-Rice2021-01-17
| | | | * gnu/packages/admin.scm (facter): Update to 4.0.49.
* gnu: inxi-minimal: Update to 3.2.02-2.Tobias Geerinckx-Rice2021-01-17
| | | | * gnu/packages/admin.scm (inxi-minimal): Update to 3.2.02-2.
* gnu: oil: Update to 0.8.6.Tobias Geerinckx-Rice2021-01-17
| | | | * gnu/packages/shells.scm (oil): Update to 0.8.6.
* gnu: pd: Update to 0.51-4.Tobias Geerinckx-Rice2021-01-17
| | | | * gnu/packages/music.scm (pd): Update to 0.51-4.
* gnu: libhandy: Update to 1.0.3.Tobias Geerinckx-Rice2021-01-17
| | | | * gnu/packages/gnome.scm (libhandy): Update to 1.0.3.
* gnu: php-fpm: Ensure no duplicate group.Julien Lepiller2021-01-17
| | | | | | | * gnu/services/web.scm (php-fpm-accounts): Ensure `php-fpm` group is not duplicated. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
* services: cups: reuse lp from %base-groups.Leo Prikler2021-01-17
| | | | * gnu/services/cups.scm (%cups-accounts): Try to reuse lp from %base-groups.
* gnu: grub: Use installed unicode font.Stefan2021-01-17
| | | | | | | | | * gnu/bootloader/grub.scm (setup-gfxterm): Remove parameter font-file. Refer to the installed font in /boot, not in the store. (font-file): Delete obsolete function. (install-grub): When populating a disk-image, install the unicode font, too. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: sbcl-cffi: Update to 0.23.0.Aurora2021-01-17
| | | | | | * gnu/packages/lisp-xyz.scm (sbcl-cffi): Update to 0.23.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: freebayes: Update to 1.3.3.Efraim Flashner2021-01-17
| | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.3. [source]: Add patch. Add snippet to remove vendored library. [build-system]: Switch to meson-build-system. [inputs]: Remove bamtools. Add fastahack, smithwaterman, tabixpp. [native-inputs]: Remove procps, python-2, tabixpp source, smithwaterman source, multichoose source, fsom source, filevercmp source, fastahack source, bash-tap source. Add bash-tap, grep, pkg-config, simde, vcflib. [arguments]: Drop make-flags. Don't delete 'configure phase. Delete custom 'fix-tests, 'build-tabixpp-and-vcflib, 'fix-makefiles, 'install phases. Adjust 'unpack-submodule-sources phase to changed native-inputs. Add new 'patch-source phase.
* gnu: multichoose: Install header files.Efraim Flashner2021-01-17
| | | | | * gnu/packages/bioinformatics.scm (multichoose)[arguments]: Adjust 'install phase to also install header files.
* gnu: filevercmp: Install header files.Efraim Flashner2021-01-17
| | | | | * gnu/packages/bioinformatics.scm (filevercmp)[arguments]: Adjust 'install phase to install header files.
* gnu: Add simde.Efraim Flashner2021-01-17
| | | | * gnu/packages/assembly.scm (simde): New variable.
* gnu: rtl-433: Update to 20.11.Guillaume Le Vaillant2021-01-17
| | | | * gnu/packages/radio.scm (rtl-433): Update to 20.11.
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