diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
2 files changed, 31 insertions, 31 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 316be1ca42..c1c987e82d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -100,6 +100,37 @@ RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.") (license license:artistic2.0))) +(define-public r-bsgenome-hsapiens-1000genomes-hs37d5 + (package + (name "r-bsgenome-hsapiens-1000genomes-hs37d5") + (version "0.99.1") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Hsapiens.1000genomes.hs37d5_" + version ".tar.gz")) + (sha256 + (base32 + "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr")))) + (properties + `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/") + (synopsis "Full genome sequences for Homo sapiens") + (description + "This package provides full genome sequences for Homo sapiens from +1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.") + (license license:artistic2.0))) + (define-public r-bsgenome-hsapiens-ucsc-hg19-masked (package (name "r-bsgenome-hsapiens-ucsc-hg19-masked") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 82f45b30c3..1e0abb3f42 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7859,37 +7859,6 @@ dependencies between GO terms can be implemented and applied.") genome data packages and support for efficient SNP representation.") (license license:artistic2.0))) -(define-public r-bsgenome-hsapiens-1000genomes-hs37d5 - (package - (name "r-bsgenome-hsapiens-1000genomes-hs37d5") - (version "0.99.1") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Hsapiens.1000genomes.hs37d5_" - version ".tar.gz")) - (sha256 - (base32 - "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr")))) - (properties - `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/") - (synopsis "Full genome sequences for Homo sapiens") - (description - "This package provides full genome sequences for Homo sapiens from -1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.") - (license license:artistic2.0))) - (define-public r-impute (package (name "r-impute") |