diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 22 |
1 files changed, 20 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c188500620..092ecf147a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15582,10 +15582,28 @@ neural networks.") #:phases (modify-phases %standard-phases (delete 'configure) ; There is no configure phase. + (add-after 'unpack 'patch-source + (lambda _ + (substitute* "Makefile" + (("-c ") "-c -fPIC ")) + #t)) + (add-after 'build 'build-dynamic + (lambda _ + (invoke "g++" + "-shared" "-o" "libfastahack.so" + "Fasta.o" "FastaHack.o" "split.o" "disorder.o"))) (replace 'install (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) - (install-file "fastahack" bin)) + (let* ((out (assoc-ref outputs "out")) + (lib (string-append out "/lib")) + (bin (string-append out "/bin"))) + (mkdir-p (string-append out "/include/fastahack")) + (for-each + (lambda (file) + (install-file file (string-append out "/include/fastahack"))) + (find-files "." "\\.h$")) + (install-file "fastahack" bin) + (install-file "libfastahack.so" lib)) #t))))) (home-page "https://github.com/ekg/fastahack") (synopsis "Indexing and sequence extraction from FASTA files") |