diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 99 |
1 files changed, 80 insertions, 19 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c1012a635b..8ebdce1376 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -32,11 +32,13 @@ #:use-module (guix hg-download) #:use-module (guix git-download) #:use-module (guix utils) + #:use-module (guix build-system ant) #:use-module (guix build-system gnu) #:use-module (guix build-system r) #:use-module (guix build-system python) #:use-module (guix build-system trivial) #:use-module (gnu packages) + #:use-module (gnu packages algebra) #:use-module (gnu packages check) #:use-module (gnu packages compression) #:use-module (gnu packages cran) @@ -318,14 +320,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-48") + (version "7.3-49") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "02q95ba909p2gxnzfp295ipxjnv14f7bm55nicxwn2kj8hizpzqd")))) + "1yjbnj1p4z0vw84wga8q5fyqiw4n6r7pc6rdwam7vsbiamyzfcqs")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") @@ -554,14 +556,14 @@ single hidden layer, and for multinomial log-linear models.") (define-public r-rpart (package (name "r-rpart") - (version "4.1-12") + (version "4.1-13") (source (origin (method url-fetch) (uri (cran-uri "rpart" version)) (sha256 (base32 - "177p03w4m0qshb3sqkdyixim3f44g2an31v3vlbjmpzjvd5ff6yq")))) + "0k29qx3k3pj5sgrpg0p47yd8i811rmdakaw57bigpq1449asc4cf")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/rpart") (synopsis "Recursive partitioning and regression trees") @@ -1098,20 +1100,21 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.1.6") + (version "0.1.7") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "103wnc8sq0iwcnj4j14hd420d2dqdyf13s3f25icsznrlyzdkhf5")))) + "122k9spymawfnfyksxyapwq9cigydy5nrjwhrwrhy3qkax3aycf6")))) (build-system r-build-system) (native-inputs `(("r-rcpp" ,r-rcpp) ("pkg-config" ,pkg-config))) (inputs - `(("cairo" ,cairo))) + `(("cairo" ,cairo) + ("zlib" ,zlib))) (propagated-inputs `(("r-withr" ,r-withr))) (home-page "https://cran.r-project.org/web/packages/gdtools") @@ -1187,13 +1190,13 @@ evaluation (NSE) in R.") (define-public r-dbi (package (name "r-dbi") - (version "0.7") + (version "0.8") (source (origin (method url-fetch) (uri (cran-uri "DBI" version)) (sha256 (base32 - "04fyrxdpqcygg5wviy637y6lgk64xqjjq31lvv4hwqj5kbaxamr5")))) + "16nf8flxr5vdz8yrpprfbzydy3ajixkp9hc8ibd9n7r9nc29waym")))) (build-system r-build-system) (home-page "https://github.com/rstats-db/DBI") (synopsis "R database interface") @@ -1330,13 +1333,13 @@ syntax that can be converted to XHTML or other formats.") (define-public r-yaml (package (name "r-yaml") - (version "2.1.16") + (version "2.1.17") (source (origin (method url-fetch) (uri (cran-uri "yaml" version)) (sha256 (base32 - "1xlsmqal607w6c9rx86061y1fwpbyd5lqp9bad5n7cc9a0blpnkm")))) + "10y6wnv2v8k396far29haqv2s82p4zm04rrsxk183wg19gb51was")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/yaml/") (synopsis "Methods to convert R data to YAML and back") @@ -2481,13 +2484,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.8.300.1.0") + (version "0.8.400.0.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0p6cbnwxgzigf7n5qhqvxdr3nd3pq3c2qq6pskqz7avzf813fy83")))) + "11y2ksf46zw6fcz0kk70szyfn7qqxwwd33xylrxvnyb7ldmbc5yr")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (native-inputs @@ -2575,14 +2578,14 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "1.8") + (version "1.9") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 (base32 - "0q1y1qx87xp6vf9h7mfl77rqhmd01xl53l9ap9qj99bfvpabb572")))) + "0wq6kbhrkv3fhcy4hg5yyv9gdvf8gr4nsjwdifs4ih8lnn0dmdyb")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2811,6 +2814,19 @@ plotted and compared with the asymptotic curve.") "0vql32np716dpd0kjn7s7wgawd02ysgp2a5il4kb19nlw661ii3x")))) (properties `((upstream-name . "lambda.r"))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'check 'delete-test-log + ;; The test report contains time stamps and is not important for + ;; the installed package. + (lambda* (#:key outputs #:allow-other-keys) + (delete-file-recursively + (string-append (assoc-ref outputs "out") + "/site-library/lambda.r/unitTests")) + #t))))) + (native-inputs + `(("r-runit" ,r-runit))) (home-page "https://cran.r-project.org/web/packages/lambda.r") (synopsis "Functional programming extension for R") (description @@ -3577,14 +3593,14 @@ the 'lite' version of the more complete @code{viridis} package.") (define-public r-tidyselect (package (name "r-tidyselect") - (version "0.2.3") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "tidyselect" version)) (sha256 (base32 - "0b0w30yq30c7bwpaghp3hp0nncqwcmvrra9j58fhx9jihay3l68c")))) + "1592dbzawhd1hpsp9919l4sifyiaaj6xr7lnhsbwa6jwmmb0xcsw")))) (build-system r-build-system) (propagated-inputs `(("r-glue" ,r-glue) @@ -4039,6 +4055,14 @@ Zurich, including many that are related to graphics.") (base32 "1xknwk9xlsj027pg0nwiizigcrsc84hdrig0jn0cgcyxj8dabdl6")))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'make-deterministic + (lambda _ + (substitute* "R/checkReverseDependencies.R" + (("tempdir\\(\\)") "\"/tmp\"")) + #t))))) (home-page "https://cran.r-project.org/web/packages/gtools") (synopsis "Various R programming tools") (description @@ -5356,14 +5380,14 @@ is supported.") (define-public r-lubridate (package (name "r-lubridate") - (version "1.7.2") + (version "1.7.3") (source (origin (method url-fetch) (uri (cran-uri "lubridate" version)) (sha256 (base32 - "0k417a1xp5gxf77ycbnx5apzpc5d25sjm83ss7wmqpbnhnr5dcav")))) + "1pzkqfiahnsdm3zx46asgn8fw43vlxvbh7r4cn70c7ffmxabzzrc")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) @@ -5539,3 +5563,40 @@ inferring an appropriate positioning method.") (description "Did you ever wish you could make scatter plots with cat shaped points? Now you can!") (license license:asl2.0)))) + +(define-public java-jdistlib + (package + (name "java-jdistlib") + (version "0.4.5") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/jdistlib/jdistlib-" + version "-src.jar")) + (sha256 + (base32 + "1pkj8aahw9ydr1isbaqrkd05nvq98ik5jwwhf3yf3rky3z869v11")))) + (build-system ant-build-system) + (arguments + `(#:jar-name "jdistlib.jar" + #:jdk ,icedtea-8 + #:tests? #f ; no dedicated test directory + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-broken-encoding + (lambda _ + (with-fluids ((%default-port-encoding "ISO-8859-1")) + (substitute* "src/jdistlib/Beta.java" + (("Scheff.+-Tukey") "Scheffe-Tukey"))) + #t))))) + (propagated-inputs + `(("java-jtransforms" ,java-jtransforms))) + (native-inputs + `(("java-junit" ,java-junit))) + (home-page "http://jdistlib.sourceforge.net/") + (synopsis "Java library of statistical distributions") + (description "JDistlib is the Java Statistical Distribution Library, a +Java package that provides routines for various statistical distributions.") + ;; The files that were translated from R code are under GPLv2+; some files + ;; are under the GPLv3, which is a mistake. The author confirmed in an + ;; email that this whole project should be under GPLv2+. + (license license:gpl2+))) |