diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 143 |
1 files changed, 82 insertions, 61 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e6ded2257b..edf725491e 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -417,14 +417,14 @@ available, greatly increasing its breadth and scope.") (define-public r-boot (package (name "r-boot") - (version "1.3-27") + (version "1.3-28") (source (origin (method url-fetch) (uri (cran-uri "boot" version)) (sha256 (base32 - "1v9anpxj4p83kd40gyfy8a454b2jmn11incrzym7wdvh8mdxpcil")))) + "0cjafhqv1c1mrjjcasqr767vs96wjcc6am9r1icryr8l4zymhwcz")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/boot") (synopsis "Bootstrap functions for R") @@ -438,14 +438,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-53.1") + (version "7.3-54") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "0ra46441y4iwcpd8px7j7vcjfj09fawl5khilaivjbg3gswiwnz4")))) + "08g8ashbcas3ac98kxvchbwc8da9dq9anpngb4arnw62npawq05q")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") @@ -459,14 +459,14 @@ Applied Statistics with S\" (4th edition, 2002) by Venables and Ripley.") (define-public r-class (package (name "r-class") - (version "7.3-18") + (version "7.3-19") (source (origin (method url-fetch) (uri (cran-uri "class" version)) (sha256 (base32 - "148k47k354k6wygpmwg79p2jwni0glpi6z7q8n0lp2w9d8p75fnj")))) + "0dxyxk59fs90713qisanlvk4p0d3l8n8n7zdd4d5c290naaaw83q")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass))) @@ -481,14 +481,14 @@ k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.") (define-public r-cluster (package (name "r-cluster") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "cluster" version)) (sha256 (base32 - "0qw06n1f7771mszc9y1f1c9zngd82zlf2s2z30p9514vxh4wgf5x")))) + "168l653ygkg21fwrqrf7lsqi5p6jzhgmcvhrwv7lznkdzdhag2jw")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -542,14 +542,14 @@ for reading and writing some dBase files.") (define-public r-kernsmooth (package (name "r-kernsmooth") - (version "2.23-18") + (version "2.23-20") (source (origin (method url-fetch) (uri (cran-uri "KernSmooth" version)) (sha256 (base32 - "14640ddvxmczd5xjg1xsd51gll2glfg946vks8wmac6jb8680d43")))) + "0fgclmzk3ksjsh3j47jqzm3jhqrwn12rkp7f84yr6wr43q2pbsr0")))) (properties `((upstream-name . "KernSmooth"))) (build-system r-build-system) (native-inputs @@ -566,13 +566,13 @@ estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) (define-public r-lattice (package (name "r-lattice") - (version "0.20-41") + (version "0.20-44") (source (origin (method url-fetch) (uri (cran-uri "lattice" version)) (sha256 (base32 - "1dapkmh4jlb9sxfrpvapvlfhczl4s8p3r20bn47gcgdk1izmbjjl")))) + "16yvdklwgjfclayh15axknjwzygx8i7y8zl5mlw8m85dqzihifap")))) (build-system r-build-system) (home-page "http://lattice.r-forge.r-project.org/") (synopsis "High-level data visualization system") @@ -630,13 +630,13 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-34") + (version "1.8-35") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 - (base32 "1pkky9xb3wsinqd75gkfbgw270vx8zh52id6bf1xj9njnzrkmc8m")))) + (base32 "1dyphss1bw5rd8apgxsb364rcrkdbc9pcbsa0jy95mg9g5434wvk")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix) @@ -653,14 +653,14 @@ distributions beyond the exponential family.") (define-public r-nnet (package (name "r-nnet") - (version "7.3-15") + (version "7.3-16") (source (origin (method url-fetch) (uri (cran-uri "nnet" version)) (sha256 (base32 - "068yxmx165r9gk4s267iczrzwbwbbg3a8qi0cgncqn78892yvsdc")))) + "0smmyx4vhlz99vy4w238y913gq74845v0l1p0g1kgydsp9lijlcr")))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Feed-forward neural networks and multinomial log-linear models") @@ -691,14 +691,14 @@ classification, regression and survival trees.") (define-public r-spatial (package (name "r-spatial") - (version "7.3-13") + (version "7.3-14") (source (origin (method url-fetch) (uri (cran-uri "spatial" version)) (sha256 (base32 - "0ciqa8y2gd1gb2yzmmn4ga6z9b00fjf49bd5qn8wmxwm2fs36w64")))) + "0dlafq744mahxpb13llmsrg54fzww8ld1nbxmr7m851gff11kk2j")))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Functions for kriging and point pattern analysis") @@ -711,14 +711,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.2-10") + (version "3.2-11") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "19fg7mrrr6chbixq10kwwl5clry2y57v6zl24jlmxx2ylis0vjzd")))) + "0w0gkni1w8rbmfw7yl08bl1s9lij1yhbkj4dvmxcarkkw26sjjzs")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -1330,13 +1330,13 @@ adapted for other output formats, such as HTML or LaTeX.") (define-public r-formatr (package (name "r-formatr") - (version "1.8") + (version "1.9") (source (origin (method url-fetch) (uri (cran-uri "formatR" version)) (sha256 (base32 - "04q6y53ji7ll131khbwiz584wl8sinhh3z82p6r8dqa9f618ay6z")))) + "0vbzvb91y5cxjbnwpww0r40r6m1l9w1qa979sv7ghhalzr7bib3i")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -1352,14 +1352,21 @@ There is also a Shiny app as a user interface in this package.") (define-public r-highr (package (name "r-highr") - (version "0.8") + (version "0.9") (source (origin (method url-fetch) (uri (cran-uri "highr" version)) (sha256 (base32 - "0my6idnhmmgs4q1vs40y2lh56yij2p59mpwvm53wjs2zk6x1zl2b")))) + "0kgdv2vf1lz3b5kbal9s83gg6812nw7fvrq0rkyr0v4k1lwi3zxy")))) (build-system r-build-system) + (propagated-inputs + `(("r-xfun" ,r-xfun))) + ;; We cannot add knitr to the inputs, because highr depends on xfun, which + ;; is an input to knitr. + #; + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/yihui/highr") (synopsis "Syntax highlighting for R source code") (description @@ -1434,13 +1441,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.31") + (version "1.33") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "1s87py0km76l72lbwx714cn5903lsdxs237k35p26d5bmyvqv39c")))) + "0289dj7h4wppn4xc4ids7xlrfb46gzd1n9r2wpmfc3c818mk70rg")))) (build-system r-build-system) (propagated-inputs `(("r-evaluate" ,r-evaluate) @@ -1650,13 +1657,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.4.10") + (version "0.4.11") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0ximv89f6zymnwms121k1jfvvflrdm3pmmf5xyvz56f1qiq04lq7")))) + "1pfm24jjkxzdb5qcbc05dcjxyk69zpfr5jv4xakqh1xh41mr43kl")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1668,14 +1675,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "3.1.0") + (version "3.1.1") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "0khmypf49la8n5gx72n7gr6dl6r6ja404i578g6sg0ail3g2i7lm")))) + "0qqfiwy7i2zjxwmz0xp1j1p88yycdg3lh377jkzz6zs6gsbd89ln")))) (build-system r-build-system) (propagated-inputs `(("r-ellipsis" ,r-ellipsis) @@ -2351,14 +2358,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "1.4.3") + (version "1.4.4") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "0sc2skh1nz7jj65p0pq4a6bl8jza6lyi4zvmvwndzxfgivgh281l")))) + "0x68di44vrqvikr419mgh9wlvbhxs52zda9pb6spikx69m4v83wj")))) (build-system r-build-system) (inputs `(("libressl" ,libressl))) @@ -2457,23 +2464,23 @@ informative error messages when it's not available.") (define-public r-devtools (package (name "r-devtools") - (version "2.3.2") + (version "2.4.0") (source (origin (method url-fetch) (uri (cran-uri "devtools" version)) (sha256 (base32 - "0vcqs4c5dfjs2ddkclv3z7zzix2zrnrxvzax8hjvjszgp8362275")))) + "094kl4d07kvmn1dcvq73mn4r30c4vpshrqj4998azh7garjlz3kj")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) ("r-cli" ,r-cli) - ("r-covr" ,r-covr) ("r-desc" ,r-desc) - ("r-dt" ,r-dt) ("r-ellipsis" ,r-ellipsis) + ("r-fs" ,r-fs) ("r-httr" ,r-httr) ("r-jsonlite" ,r-jsonlite) + ("r-lifecycle" ,r-lifecycle) ("r-memoise" ,r-memoise) ("r-pkgbuild" ,r-pkgbuild) ("r-pkgload" ,r-pkgload) @@ -2498,13 +2505,13 @@ tools to simplify the devolpment of R packages.") (define-public r-withr (package (name "r-withr") - (version "2.4.1") + (version "2.4.2") (source (origin (method url-fetch) (uri (cran-uri "withr" version)) (sha256 (base32 - "13qpcx7vjnqchvbbdwiqw286gkiajp02pcvhn7w7ddjiil2xjpjz")))) + "1j5srffi748yxphwli56lkbh4cga0kmz38dyzganzkw0nx66mya8")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -2636,13 +2643,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.10.2.2.0") + (version "0.10.4.0.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "193smj6vp3cn3qjhrx2llgi5c7hs069crhvi85xj2vzx80fx6r9q")))) + "00nc7wfrra645mp7dl4j451m3pk3a0b3lrhgf8ydnw862avr9s6v")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -2664,13 +2671,13 @@ the header files from the templated Armadillo library.") (define-public r-bitops (package (name "r-bitops") - (version "1.0-6") + (version "1.0-7") (source (origin (method url-fetch) (uri (cran-uri "bitops" version)) (sha256 (base32 - "176nr5wpnkavn5z0yy9f7d47l37ndnn2w3gv854xav8nnybi6wwv")))) + "1i0phmq5yynla5x0frqll1gbf5ww59p3sgz1s06a354zqf9grdg9")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/bitops") (synopsis "Bitwise operations") @@ -2843,18 +2850,17 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.2.5") + (version "2.2.7") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "14cxqh8j5v2rqs6yiargy1miycvx7xj47lppvpnnchi5plimlvyy")))) + "1j89n4ydv42y5hqqv8nz72sa5wncws074kg527s902k1a67s69ii")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs `(("r-dbi" ,r-dbi) - ("r-bh" ,r-bh) ("r-memoise" ,r-memoise) ("r-plogr" ,r-plogr) ("r-rcpp" ,r-rcpp) @@ -3040,14 +3046,14 @@ statements.") (define-public r-segmented (package (name "r-segmented") - (version "1.3-3") + (version "1.3-4") (source (origin (method url-fetch) (uri (cran-uri "segmented" version)) (sha256 (base32 - "16036lp0dq7qqzy8wc4qsgv58zksz6hmgw51v88gl6xclryc670y")))) + "0bchqcy308kbywavgyg9kb4543rbkfn753q9c6d7l7aw7sxvyxl2")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/segmented") (synopsis "Regression models with breakpoints estimation") @@ -3200,13 +3206,13 @@ using the multicore functionality of the parallel package.") (define-public r-dt (package (name "r-dt") - (version "0.17") + (version "0.18") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "0mpvyfmi2viyhdqx11hznd7dl0q6kxrdmppjsmm2pk0x8a904hz3")))) + "1vxqmj01504k9639m2cig1s4qflz3dj54h9rgx5qa72fpkvkk411")))) (properties `((upstream-name . "DT"))) (build-system r-build-system) @@ -3564,15 +3570,20 @@ developing R packages.") (define-public r-r-cache (package (name "r-r-cache") - (version "0.14.0") + (version "0.15.0") (source (origin (method url-fetch) (uri (cran-uri "R.cache" version)) (sha256 (base32 - "1n8n5ihkryrbxv630dwhz4r048nyv676qd3i9f5z5fa04hvlxbqq")))) + "09pipn1974ivjh4sm3n5fjlh31rilf87p30qwq7y25vriyqd7d5d")))) (properties `((upstream-name . "R.cache"))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs `(("r-digest" ,r-digest) ("r-r-methodss3" ,r-r-methodss3) @@ -3599,6 +3610,11 @@ persistent (on the file system).") "0n9sxrffahgxcc8h9vgxg5i446g14cibixpf82nkpm5bvidhfsc9")))) (properties `((upstream-name . "R.rsp"))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs `(("r-digest" ,r-digest) ("r-r-cache" ,r-r-cache) @@ -3650,6 +3666,11 @@ t-probabilities, quantiles, random deviates and densities.") "0jab3xk56vqqzgz8jbsvxvsvr83sj0gb3cic0906wjyjijwv8rw3")))) (properties `((upstream-name . "matrixStats"))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs `(("r-r-rsp" ,r-r-rsp))) ;used to build vignettes (home-page "https://github.com/HenrikBengtsson/matrixStats") @@ -3665,13 +3686,13 @@ memory usage.") (define-public r-viridis (package (name "r-viridis") - (version "0.5.1") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "viridis" version)) (sha256 (base32 - "060rf1jn29dq53y3nhb0hykvcap6rqsk04rq544ypiiqb18ngwnx")))) + "1vr5s86h39r86pfxyh3pylpwhf2chdy047ny63v04f576w4hxarp")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -3694,14 +3715,14 @@ most common form of color blindness.") (define-public r-viridislite (package (name "r-viridislite") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "viridisLite" version)) (sha256 (base32 - "1by2l05f0yabwvv64lhnv7bbhx0w683s3wr9j2xda920ghpa23kq")))) + "0siwr0vq80gs3sbyd542zjb0cl9av5zqdm0fqnym5g6ribf5b6c4")))) (properties `((upstream-name . "viridisLite"))) (build-system r-build-system) (home-page "https://github.com/sjmgarnier/viridisLite") @@ -3720,14 +3741,14 @@ more complete @code{viridis} package.") (define-public r-tidyselect (package (name "r-tidyselect") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "tidyselect" version)) (sha256 (base32 - "14rqx4dq574hilmdwrr34wyjg8rlw4rvndpsqd9plgxm3wwfsdg6")))) + "0ss8mq05mwif64cj8zmrfx0ljgy3n0fvyv7f37782shr8rknmsqq")))) (build-system r-build-system) (propagated-inputs `(("r-ellipsis" ,r-ellipsis) @@ -4144,14 +4165,14 @@ existing packages provide.") (define-public r-sfsmisc (package (name "r-sfsmisc") - (version "1.1-10") + (version "1.1-11") (source (origin (method url-fetch) (uri (cran-uri "sfsmisc" version)) (sha256 (base32 - "1skxahq5jgqdsllpsavzrcpz8l0yj3mfzcf70as8d33jxbiaa4s4")))) + "1qm39v2a41rgiv1hxwxl06grgbmjgg3r2ch5df3zsf82rs9fv2n7")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sfsmisc") (synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich") @@ -4819,14 +4840,14 @@ regression methodology including model selections and multivariate statistics.") (define-public r-pcapp (package (name "r-pcapp") - (version "1.9-73") + (version "1.9-74") (source (origin (method url-fetch) (uri (cran-uri "pcaPP" version)) (sha256 (base32 - "1z2kdf9gfp965xbcd4rg6vf20d1bl443na0qjkpq7gmzpaq6cifa")))) + "1dlrz5plb8b89vr3j6sn9jwryyhcwflqkiilxkybbr379m1pp0sh")))) (properties `((upstream-name . "pcaPP"))) (build-system r-build-system) (propagated-inputs |