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-rw-r--r--gnu/packages/statistics.scm50
1 files changed, 40 insertions, 10 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 9bfa4c5683..57fb99ef28 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -115,6 +115,36 @@ can be imported from spreadsheets, text files and database sources and it can
be output in text, PostScript, PDF or HTML.")
(license license:gpl3+)))
+(define-public jags
+ (package
+ (name "jags")
+ (version "4.3.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/mcmc-jags/JAGS/"
+ (version-major version) ".x/Source/"
+ "JAGS-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1z3icccg2ic56vmhyrpinlsvpq7kcaflk1731rgpvz9bk1bxvica"))))
+ (build-system gnu-build-system)
+ (home-page "http://mcmc-jags.sourceforge.net/")
+ (native-inputs
+ `(("gfortran" ,gfortran)
+ ("lapack" ,lapack)))
+ (synopsis "Gibbs sampler")
+ (description "JAGS is Just Another Gibbs Sampler. It is a program for
+analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC)
+simulation not wholly unlike BUGS. JAGS was written with three aims in mind:
+
+@enumerate
+@item To have a cross-platform engine for the BUGS language;
+@item To be extensible, allowing users to write their own functions,
+ distributions and samplers;
+@item To be a platform for experimentation with ideas in Bayesian modelling.
+@end enumerate\n")
+ (license license:gpl2)))
+
;; Update this package together with the set of recommended packages: r-boot,
;; r-class, r-cluster, r-codetools, r-foreign, r-kernsmooth, r-lattice,
;; r-mass, r-matrix, r-mgcv, r-nlme, r-nnet, r-rpart, r-spatial, r-survival.
@@ -1620,13 +1650,13 @@ and printing capabilities than traditional data frames.")
(define-public r-dplyr
(package
(name "r-dplyr")
- (version "0.7.7")
+ (version "0.7.8")
(source (origin
(method url-fetch)
(uri (cran-uri "dplyr" version))
(sha256
(base32
- "196lwck3i3m25jnn1f1nrda9svnjqqi89s0is79gbrphamddnlq5"))))
+ "06p59nhli8c1sarghzxq0y4pk6lyyz3xwkarp55b252dfg2rly9p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
@@ -2528,13 +2558,13 @@ well as additional utilities such as panel and axis annotation functions.")
(define-public r-rcpparmadillo
(package
(name "r-rcpparmadillo")
- (version "0.9.100.5.0")
+ (version "0.9.200.4.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RcppArmadillo" version))
(sha256
(base32
- "1iyjqhfjip1nxrkllzh7r1m01jjnx7cahqkf3s557w34p987f2l1"))))
+ "1ayvpyi4hgaqrhx1kqi640iillc2byj4kam7vydlgqmdrzpgrfvz"))))
(properties `((upstream-name . "RcppArmadillo")))
(build-system r-build-system)
(native-inputs
@@ -3268,14 +3298,14 @@ the way current RNG settings can be changed.")
(define-public r-rtsne
(package
(name "r-rtsne")
- (version "0.13")
+ (version "0.15")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rtsne" version))
(sha256
(base32
- "17crbdi80q4g2pwp9v7j3bdaznk96qlrqx01zvj3wwqippizyfqw"))))
+ "0v17vxizrs1msay24xl2bckfajr2c82wpqj07lyssbrq197nwdsn"))))
(properties `((upstream-name . "Rtsne")))
(build-system r-build-system)
(propagated-inputs
@@ -5123,14 +5153,14 @@ algorithms.")
(define-public r-lme4
(package
(name "r-lme4")
- (version "1.1-18-1")
+ (version "1.1-19")
(source
(origin
(method url-fetch)
(uri (cran-uri "lme4" version))
(sha256
(base32
- "01ar4fak8zj7c1vmh9m576wchxj5qzpfqn637s7fh3fl6cpz0alq"))))
+ "0j8xhkkcdv45ilab960s9jrcjk6jbzvd7w7myswv5fmalrpq52pf"))))
(build-system r-build-system)
(native-inputs
`(("r-rcpp" ,r-rcpp)
@@ -5325,14 +5355,14 @@ first and second order derivatives.")
(define-public r-sn
(package
(name "r-sn")
- (version "1.5-2")
+ (version "1.5-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "sn" version))
(sha256
(base32
- "16gwr68zzj5v83bqfmzxnzwig3dnjrkxdhs6clri1caqkvrq6aig"))))
+ "10via4lg0vx9pzq350vwhz5wv1dhzxr2l3r6jq99nk37vmyvj8fc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mnormt" ,r-mnormt)