diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 75 |
1 files changed, 70 insertions, 5 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3d0faf7572..7b3483206f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl> +;;; Copyright © 2016 Roel Janssen <roel@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -98,7 +99,7 @@ be output in text, PostScript, PDF or HTML.") (define-public r (package (name "r") - (version "3.2.5") + (version "3.3.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -106,7 +107,7 @@ be output in text, PostScript, PDF or HTML.") version ".tar.gz")) (sha256 (base32 - "1dc0iybjk9kr1nghz3fpir6mb9hb9rnrz9bgh00w5pg5vir5cx30")))) + "1r0i0cqs3p0vrpiwq0zg5kbrmja9rmaijyzf9f23v6d5n5ab2mlj")))) (build-system gnu-build-system) (arguments `(#:make-flags @@ -120,10 +121,14 @@ be output in text, PostScript, PDF or HTML.") ;; Set default pager to "cat", because otherwise it is "false", ;; making "help()" print nothing at all. (lambda _ (setenv "PAGER" "cat") #t)) - (add-before - 'check 'set-timezone + (add-before 'check 'set-timezone ;; Some tests require the timezone to be set. - (lambda _ (setenv "TZ" "UTC") #t)) + (lambda* (#:key inputs #:allow-other-keys) + (setenv "TZ" "UTC") + (setenv "TZDIR" + (string-append (assoc-ref inputs "tzdata") + "/share/zoneinfo")) + #t)) (add-after 'build 'make-info (lambda _ (zero? (system* "make" "info")))) (add-after 'build 'install-info @@ -160,6 +165,8 @@ be output in text, PostScript, PDF or HTML.") ("xz" ,xz))) (inputs `(("cairo" ,cairo) + ("curl" ,curl) + ("tzdata" ,tzdata) ("gfortran" ,gfortran) ("icu4c" ,icu4c) ("libjpeg" ,libjpeg) @@ -252,6 +259,24 @@ purposes for which more comprehensive (and widely tested) libraries such as OpenSSL should be used.") (license license:gpl2+))) +(define-public r-estimability + (package + (name "r-estimability") + (version "1.1-1") + (source (origin + (method url-fetch) + (uri (cran-uri "estimability" version)) + (sha256 + (base32 + "049adh8i0ad0m0qln2ylqdxcs5v2q9zfignn2a50r5f93ip2ay6w")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/estimability") + (synopsis "Tools for assessing estimability of linear predictions") + (description "Provides tools for determining estimability of linear +functions of regression coefficients, and 'epredict' methods that handle +non-estimable cases correctly.") + (license license:gpl2+))) + (define-public r-gtable (package (name "r-gtable") @@ -1239,6 +1264,27 @@ inference for statistical models.") `(("python2-setuptools" ,python2-setuptools) ,@(package-native-inputs stats)))))) +(define-public r-coda + (package + (name "r-coda") + (version "0.18-1") + (source (origin + (method url-fetch) + (uri (cran-uri "coda" version)) + (sha256 + (base32 + "03sc780734zj2kqcm8lkyvf76fql0jbfhkblpn8l58zmb6cqi958")))) + (build-system r-build-system) + (propagated-inputs + `(("r-lattice" ,r-lattice))) + (home-page "http://cran.r-project.org/web/packages/coda") + (synopsis "This is a package for Output Analysis and Diagnostics for MCMC") + (description "This package provides functions for summarizing and plotting +the output from Markov Chain Monte Carlo (MCMC) simulations, as well as +diagnostic tests of convergence to the equilibrium distribution of the Markov +chain.") + (license license:gpl2+))) + (define-public r-xml2 (package (name "r-xml2") @@ -2393,6 +2439,25 @@ things. RSP is ideal for self-contained scientific reports and R package vignettes.") (license license:lgpl2.1+))) +(define-public r-mvtnorm + (package + (name "r-mvtnorm") + (version "1.0-5") + (source (origin + (method url-fetch) + (uri (cran-uri "mvtnorm" version)) + (sha256 + (base32 + "1pc1mi2h063gh4a40009xk5j6pf5bm4274i5kycln38dixsry3yh")))) + (build-system r-build-system) + (inputs + `(("gfortran" ,gfortran))) + (home-page "http://mvtnorm.R-forge.R-project.org") + (synopsis "Package for multivariate normal and t-distributions") + (description "This package can compute multivariate normal and +t-probabilities, quantiles, random deviates and densities.") + (license license:gpl2))) + (define-public r-matrixstats (package (name "r-matrixstats") |