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-rw-r--r--gnu/packages/statistics.scm130
1 files changed, 66 insertions, 64 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 3c69901a0a..b4de0e812b 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -523,17 +523,17 @@ for reading and writing some dBase files.")
(define-public r-kernsmooth
(package
(name "r-kernsmooth")
- (version "2.23-15")
+ (version "2.23-16")
(source
(origin
(method url-fetch)
(uri (cran-uri "KernSmooth" version))
(sha256
(base32
- "1xhha8kw10jv8pv8b61hb5in9qiw3r2a9kdji3qlm991s4zd4wlb"))))
+ "1acrkbdn3a74y4dndkcdl1njnpfqz7gk3bsz03g8lfj8l7z53hmq"))))
(properties `((upstream-name . "KernSmooth")))
(build-system r-build-system)
- (inputs
+ (native-inputs
`(("gfortran" ,gfortran)))
(home-page "https://cran.r-project.org/web/packages/KernSmooth")
(synopsis "Functions for kernel smoothing")
@@ -589,14 +589,13 @@ and operations on them using LAPACK and SuiteSparse.")
(define-public r-nlme
(package
(name "r-nlme")
- (version "3.1-141")
+ (version "3.1-142")
(source
(origin
(method url-fetch)
(uri (cran-uri "nlme" version))
(sha256
- (base32
- "0ml00g79bimjcl0sgn6h55l5b4gfmnsnc1vvmivggn0318k4c04i"))))
+ (base32 "0figfb1i22hfkkhzpprmpp723s01r43x725a1ab0pc9gsxqg90nx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -612,14 +611,13 @@ nonlinear mixed-effects models.")
(define-public r-mgcv
(package
(name "r-mgcv")
- (version "1.8-29")
+ (version "1.8-31")
(source
(origin
(method url-fetch)
(uri (cran-uri "mgcv" version))
(sha256
- (base32
- "1236gz25nap1aprbvcrqvmmnl6f8cvbjy8dcl4j968cpalqax5ww"))))
+ (base32 "1if34mqsn9r7g0l82lxvvx0wjhi9paqdymyd73nschxcl1if8vbk"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)
@@ -694,14 +692,14 @@ analysis.")
(define-public r-survival
(package
(name "r-survival")
- (version "2.44-1.1")
+ (version "3.1-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "survival" version))
(sha256
(base32
- "1faiwyg7x8y2kfzb66l4yc8br0mdlz4k20znmjrwq96dbzhm3cam"))))
+ "1ij77bgfcjx29xkx5bck0sv4ybglpcmzzv9ilkinj8fqhhclbs8p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
@@ -805,13 +803,13 @@ effects of different types of color-blindness.")
(define-public r-digest
(package
(name "r-digest")
- (version "0.6.21")
+ (version "0.6.22")
(source
(origin
(method url-fetch)
(uri (cran-uri "digest" version))
(sha256
- (base32 "0qycqchmv59fb6jp369d82mcx9xgbv70m18qzam0vrs8zkmajb17"))))
+ (base32 "1qav52y1qmkg9j2g48mrl6bbjwhs0fs9dl55xb62lfkrihkappqh"))))
(build-system r-build-system)
;; Vignettes require r-knitr, which requires r-digest, so we have to
;; disable them and the tests.
@@ -1200,14 +1198,14 @@ agnes cluster diagrams.")
(define-public r-gdtools
(package
(name "r-gdtools")
- (version "0.2.0")
+ (version "0.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "gdtools" version))
(sha256
(base32
- "1mvpkp8cj30fwd4bwlz96x3cff7yzfbfz7iswmf77zl0a6122inh"))))
+ "1aax50wyrs4336zpf247l8wmp4spab2n70msziy1ip4gbjn26wa1"))))
(build-system r-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@@ -1451,13 +1449,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.")
(define-public r-knitr
(package
(name "r-knitr")
- (version "1.25")
+ (version "1.26")
(source (origin
(method url-fetch)
(uri (cran-uri "knitr" version))
(sha256
(base32
- "0lsc201a4f6xksmsklhr6gmhl0mxih0xhlcdvhs2ypzcx1pvkpnv"))))
+ "08f3bdd5cnnbigybr9vmkhq12n64pbmn4layl3w5rwk8xi5kbnrq"))))
(build-system r-build-system)
(propagated-inputs
`(("r-evaluate" ,r-evaluate)
@@ -1606,20 +1604,22 @@ R packages that praise their users.")
(define-public r-testthat
(package
(name "r-testthat")
- (version "2.2.1")
+ (version "2.3.0")
(source (origin
(method url-fetch)
(uri (cran-uri "testthat" version))
(sha256
(base32
- "0y0bvggm4pzkzp6xn7b8cf3ybqp9ijxkhhyp3z49a9iipc90bvk7"))))
+ "0qlajfgm3zjrmladwcm0xzw8zp2431zz2asa2w7lpg7zl6ymvz29"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
("r-crayon" ,r-crayon)
("r-digest" ,r-digest)
+ ("r-ellipsis" ,r-ellipsis)
("r-evaluate" ,r-evaluate)
("r-magrittr" ,r-magrittr)
+ ("r-pkgload" ,r-pkgload)
("r-praise" ,r-praise)
("r-r6" ,r-r6)
("r-rlang" ,r-rlang)
@@ -1634,13 +1634,13 @@ flexible and easy to set up.")
(define-public r-r6
(package
(name "r-r6")
- (version "2.4.0")
+ (version "2.4.1")
(source (origin
(method url-fetch)
(uri (cran-uri "R6" version))
(sha256
(base32
- "1kmbw2k5vvzwh3wwmn66mszpfny0z6k8dca980qgbxgvfh0i3gkh"))))
+ "0gma5z41mx02ka9h96xdyf3p6i1rx0izczrzj26c4mbnh9jgvc16"))))
(build-system r-build-system)
(home-page "https://github.com/wch/R6/")
(synopsis "Classes with reference semantics in R")
@@ -1656,13 +1656,13 @@ defined in different packages.")
(define-public r-rlang
(package
(name "r-rlang")
- (version "0.4.0")
+ (version "0.4.1")
(source (origin
(method url-fetch)
(uri (cran-uri "rlang" version))
(sha256
(base32
- "038mmbmklw17ncgz53vrdx2506c1jj6di3y165bbx2sl2yia8j4p"))))
+ "122hhc7pdri8wkjmk37y71m4h1gmdzaqcfdizfdjg1bhy935i10k"))))
(build-system r-build-system)
(home-page "http://rlang.tidyverse.org")
(synopsis "Functions for base types, core R and Tidyverse features")
@@ -1848,16 +1848,18 @@ times.")
(define-public r-data-table
(package
(name "r-data-table")
- (version "1.12.4")
+ (version "1.12.6")
(source (origin
(method url-fetch)
(uri (cran-uri "data.table" version))
(sha256
(base32
- "0zdcbr4nixvl8ga4mp9pw1dfww35dzhzpb6ixajqasiri824m7i9"))))
+ "1kgbnm5gv7ax7qn8irpz7qsry2ci21axga8y7qpkidcqkxkkndn2"))))
(build-system r-build-system)
(inputs
`(("zlib" ,zlib)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
(home-page "https://github.com/Rdatatable/data.table/wiki")
(synopsis "Enhanced version of data.frame R object")
(description
@@ -2307,13 +2309,13 @@ tables, autolinks and strikethrough text.")
(define-public r-roxygen2
(package
(name "r-roxygen2")
- (version "6.1.1")
+ (version "7.0.0")
(source (origin
(method url-fetch)
(uri (cran-uri "roxygen2" version))
(sha256
(base32
- "0wq29ilqas8yn2z8v49fk0hbgchg29nmyyhwczgdipz0cbhbfipd"))))
+ "13sani3y9ql56cvja8pfjpwsbq8pismc52ns1cq1zgi0jycgqja5"))))
(build-system r-build-system)
(propagated-inputs
`(("r-brew" ,r-brew)
@@ -2324,6 +2326,7 @@ tables, autolinks and strikethrough text.")
("r-purrr" ,r-purrr)
("r-r6" ,r-r6)
("r-rcpp" ,r-rcpp)
+ ("r-rlang" ,r-rlang)
("r-stringi" ,r-stringi)
("r-stringr" ,r-stringr)
("r-xml2" ,r-xml2)))
@@ -2502,14 +2505,14 @@ were originally a part of the r-devtools package.")
(define-public r-hms
(package
(name "r-hms")
- (version "0.5.1")
+ (version "0.5.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "hms" version))
(sha256
(base32
- "1v4cxfpvp85la4gqla6b4q2bwx4jv1fxqwndcnjsibbnybz6wcvd"))))
+ "0h24dsagn4kcr65arn73mpqapcg002kw4kyxfqyff95j6s6cjifl"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rlang" ,r-rlang)
@@ -2610,13 +2613,13 @@ well as additional utilities such as panel and axis annotation functions.")
(define-public r-rcpparmadillo
(package
(name "r-rcpparmadillo")
- (version "0.9.700.2.0")
+ (version "0.9.800.1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RcppArmadillo" version))
(sha256
(base32
- "0g25w32dnqrvhnri8x4yxqawxd8qhn7w3m8d29nxxy0gybx3y8x9"))))
+ "1frg7y3fb571jf9dp1kkc75x0nxvw8j3qccsrm1brg5l1z2jmlaz"))))
(properties `((upstream-name . "RcppArmadillo")))
(build-system r-build-system)
;; All needed for vignettes
@@ -2708,13 +2711,13 @@ certain criterion, e.g., it contains a certain regular file.")
(define-public r-rmarkdown
(package
(name "r-rmarkdown")
- (version "1.16")
+ (version "1.17")
(source
(origin
(method url-fetch)
(uri (cran-uri "rmarkdown" version))
(sha256
- (base32 "1p11g9lma604ndrhvyvriqxxp91lardc543nmvmr49n1m7309qvz"))))
+ (base32 "18dj6nr1m79pv1pv9w2n0rhiidwqjb2w8w1rnpcwijwbz4i8d3k2"))))
(properties `((upstream-name . "rmarkdown")))
(build-system r-build-system)
(propagated-inputs
@@ -3176,13 +3179,13 @@ using the multicore functionality of the parallel package.")
(define-public r-dt
(package
(name "r-dt")
- (version "0.9")
+ (version "0.10")
(source (origin
(method url-fetch)
(uri (cran-uri "DT" version))
(sha256
(base32
- "17han4560jv8mmfn4f8adrwh0x25fxz2qwd0sv7vv4iky5and8a7"))))
+ "0vwhn1mcwv0hkbxnppf6vip23iiib0szvp1h3prawlkvd74xziiw"))))
(properties
`((upstream-name . "DT")))
(build-system r-build-system)
@@ -3253,20 +3256,21 @@ analysis of large sparse or dense matrices.")
(define-public r-glmnet
(package
(name "r-glmnet")
- (version "2.0-18")
+ (version "3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "glmnet" version))
(sha256
(base32
- "0sr5akaiaab1sdh9c8gfmc4kp9b4vqhd90d9ig0rqpqhp3bykp78"))))
+ "1fwspkxbsx7jy5h8zcdl0q8xsbj7svjjbcmg5lfpxdsgyyww46v7"))))
(build-system r-build-system)
- (inputs
+ (native-inputs
`(("gfortran" ,gfortran)))
(propagated-inputs
`(("r-foreach" ,r-foreach)
- ("r-matrix" ,r-matrix)))
+ ("r-matrix" ,r-matrix)
+ ("r-shape" ,r-shape)))
(home-page "http://www.jstatsoft.org/v33/i01")
(synopsis "Lasso and elastic-net regularized generalized linear models")
(description
@@ -3534,13 +3538,13 @@ want to migrate to S4.")
(define-public r-r-oo
(package
(name "r-r-oo")
- (version "1.22.0")
+ (version "1.23.0")
(source (origin
(method url-fetch)
(uri (cran-uri "R.oo" version))
(sha256
(base32
- "0k6xwy93fpb2p7bs76lzk52br9rv5xnd9524xj8qyazv1132x1n0"))))
+ "189fb7mmyzwg6nn8rza8iip7fbyws7i2vkmzy672x9mhvgilq4pm"))))
(properties `((upstream-name . "R.oo")))
(build-system r-build-system)
(propagated-inputs
@@ -3605,13 +3609,13 @@ persistent (on the file system).")
(define-public r-r-rsp
(package
(name "r-r-rsp")
- (version "0.43.1")
+ (version "0.43.2")
(source (origin
(method url-fetch)
(uri (cran-uri "R.rsp" version))
(sha256
(base32
- "0i01p8jxc4j4zl2v2ykvvpfnm5hv650zj1wi1dh8hq0c98xi2yfr"))))
+ "128zqyvbq9hm9gy86jzhj609lkfw57vr24mdxgh46ncmx66ag4gj"))))
(properties `((upstream-name . "R.rsp")))
(build-system r-build-system)
(propagated-inputs
@@ -3795,14 +3799,14 @@ and tidyr provides no margins or aggregation.")
(define-public r-hexbin
(package
(name "r-hexbin")
- (version "1.27.3")
+ (version "1.28.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "hexbin" version))
(sha256
(base32
- "14f181lw6sj5xhfxbrpyyinsjfl0nzqilq6z80lgrhj2cnkj593y"))))
+ "0b58jb1kz39wzrnkv077cfzns889xly7psvhxnm3xmnx6yvd986d"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -3818,14 +3822,14 @@ It uses and relies on grid graphics and formal (S4) classes and methods.")
(define-public r-purrr
(package
(name "r-purrr")
- (version "0.3.2")
+ (version "0.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "purrr" version))
(sha256
(base32
- "0ccs78a2ylr60f3z0f7iywi8h1pwr8mz4ga78bs4pwgnwkclvir7"))))
+ "17lyys7dxjrwsfkq7a7hw65iy3qn3pp1sn70srdy64jf8adahc8g"))))
(build-system r-build-system)
(propagated-inputs
`(("r-magrittr" ,r-magrittr)
@@ -3840,13 +3844,13 @@ features present in other programming languages.")
(define-public r-plotly
(package
(name "r-plotly")
- (version "4.9.0")
+ (version "4.9.1")
(source (origin
(method url-fetch)
(uri (cran-uri "plotly" version))
(sha256
(base32
- "1kz2hm7vnkn4clxr6yyxxnmdmkz9zwjq6bzysw7j27r3721i8qgp"))))
+ "0gadam4qw81q9gpjp7sqrpd7ikmcdsc78d8vjn39g0xzs5j8r845"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
@@ -4043,14 +4047,13 @@ package instead.")
(define-public r-hmisc
(package
(name "r-hmisc")
- (version "4.2-0")
+ (version "4.3-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "Hmisc" version))
(sha256
- (base32
- "1n8i2jhc308hd6bvys9cd7nrz7pwjszs03r5bwlh1pc869ki95ly"))))
+ (base32 "0rb1m6138lqzb46nss9ggvhghipd10vdnwsy6iq2wzynrynzkwkz"))))
(properties `((upstream-name . "Hmisc")))
(build-system r-build-system)
(native-inputs
@@ -5155,14 +5158,13 @@ using modular prediction and response module classes.")
(define-public r-quantreg
(package
(name "r-quantreg")
- (version "5.51")
+ (version "5.52")
(source
(origin
(method url-fetch)
(uri (cran-uri "quantreg" version))
(sha256
- (base32
- "1cdx51a9g6fjq2g9arr6wp6ghkyl2m6bs2dj4kcycvpn8p9304yz"))))
+ (base32 "0rq9as31wiz41lmi9hmdq3gknpcbpwqzfcn065ysjdxzjdb57dcy"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
@@ -5286,14 +5288,14 @@ Companion to Applied Regression, Third Edition, Sage.")
(define-public r-car
(package
(name "r-car")
- (version "3.0-3")
+ (version "3.0-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "car" version))
(sha256
(base32
- "0vy3g3bjljd2al8xb9qr45f98is7yppc9jilqn7b6zvf5yqpr07s"))))
+ "1mhfxrb62yanaz36f4n38p9hhnqbs5b19k0864w4ja1ccgh3nl3f"))))
(build-system r-build-system)
(propagated-inputs
`(("r-abind" ,r-abind)
@@ -5733,16 +5735,16 @@ shaped points? Now you can!")
(define-public r-colorout
(package
(name "r-colorout")
- (version "1.2-0")
+ (version "1.2-2")
(source
(origin
- (method url-fetch)
- (uri (string-append "https://github.com/jalvesaq/colorout/archive/"
- "v" version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/jalvesaq/colorout.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32
- "07vqx5ihgnq4dzn5jnfjfhdm3957v4prvf8vhnb3cwvlly4l7p9v"))))
+ (base32 "1rsx69wjpa73c6x2hacvvvbzdzxn7wg06gizf97kasjdlb7azmp3"))))
(build-system r-build-system)
(home-page "https://github.com/jalvesaq/colorout")
(synopsis "Colorize output in the R REPL")