diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 105 |
1 files changed, 65 insertions, 40 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 557b63aeae..d15732c839 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -652,13 +652,13 @@ estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) (define-public r-lattice (package (name "r-lattice") - (version "0.21-9") + (version "0.22-5") (source (origin (method url-fetch) (uri (cran-uri "lattice" version)) (sha256 (base32 - "0ak9k6s6drd1a25m7mwzb426ms92a2p3ps04h2pacifwnk74ca59")))) + "1wd5dlxi0hd4l08g999y3xnxnaq06gwvflcqr9ym0cx131gbw7xs")))) (build-system r-build-system) (home-page "https://lattice.r-forge.r-project.org/") (synopsis "High-level data visualization system") @@ -757,14 +757,14 @@ single hidden layer, and for multinomial log-linear models.") (define-public r-rpart (package (name "r-rpart") - (version "4.1.19") + (version "4.1.21") (source (origin (method url-fetch) (uri (cran-uri "rpart" version)) (sha256 (base32 - "0rcm4hk2k0ag9qmb0f933yqrq8jpnclwrzp6825swgsqnp83wwpy")))) + "0av28n5as53qrxm41hcrwv59qdv7gfli668q32z0a5r1bdkiqz77")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/rpart") (synopsis "Recursive partitioning and regression trees") @@ -1252,13 +1252,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.4.3") + (version "3.4.4") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "0hx5j47y2fxrcg4fxavyn5jjycpwkmsiqsjh6kj7nwp7dg79mqjw")))) + (base32 "0iiywrzv8j0npasvzgkxwhw0zqisf4xmpx06jl0lsq1ybl3fqxid")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -1268,10 +1268,10 @@ using just two functions: melt and dcast (or acast).") r-lifecycle r-mass r-mgcv - r-tibble r-rlang r-scales r-svglite ; Needed for 'ggsave' + r-tibble r-vctrs r-withr)) (native-inputs @@ -1316,19 +1316,19 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.3.3") + (version "0.3.4") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "10rlx1ciyvh0ayic03kckv360idl9s1zyc2ar5lisns786c1hnns")))) + "00mak9js1s05j5bmkda24nl2z023jsyg8zc60nm4h2xs7w1l7mxa")))) (build-system r-build-system) (native-inputs (list pkg-config)) (inputs - (list cairo fontconfig freetype)) + (list cairo fontconfig freetype zlib)) (propagated-inputs (list r-curl r-fontquiver @@ -1534,13 +1534,13 @@ data derived from /etc/mime.types in UNIX-type systems.") (define-public r-markdown (package (name "r-markdown") - (version "1.9") + (version "1.11") (source (origin (method url-fetch) (uri (cran-uri "markdown" version)) (sha256 (base32 - "0201v3spgl8a5c5xkddac5a3z9zh8d0nm9yg6alyhhj4cjwmgibh")))) + "052zrb6bnr6k3p9pmm3vfh3g7z20g6pjvphjdiqyjb4mb9sn3z27")))) (build-system r-build-system) ;; Skip check phase because the tests require the r-knitr package to be ;; installed. This prevents installation failures. Knitr normally @@ -1578,13 +1578,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.44") + (version "1.45") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "015ylljvx0q2himch4k813021nvh0l7p5x3aqdkj3w0ax8x8k3ki")))) + "1yw4fnzm8lvh6kpcdlvr1fahz7421h5mmaris58zlgn57fjxwbpf")))) (build-system r-build-system) (propagated-inputs (list r-evaluate r-highr r-xfun r-yaml)) @@ -1866,14 +1866,14 @@ database.") (define-public r-dbplyr (package (name "r-dbplyr") - (version "2.3.4") + (version "2.4.0") (source (origin (method url-fetch) (uri (cran-uri "dbplyr" version)) (sha256 (base32 - "1b6y1jhf5ix4vry165vwid5nqm0d99q61vxak6aw3vfkj379vgk9")))) + "1rzi8112fi0bx2fj0j5ak9bfgqgjk5k5dv66qrb890gsf5bz6m4i")))) (build-system r-build-system) (propagated-inputs (list r-blob @@ -2182,7 +2182,7 @@ comparison and diagnostics.") (define-public python-pymc (package (name "python-pymc") - (version "5.7.2") + (version "5.9.1") (source (origin (method git-fetch) ; no tests in PyPI (uri (git-reference @@ -2191,7 +2191,7 @@ comparison and diagnostics.") (file-name (git-file-name name version)) (sha256 (base32 - "1r3lxpfc782f0wphdqfgsskbz52i0gwgrmxb65307k6cqia69s3r")))) + "1y90xa85q38zwsi69q5bv95vyjg3jp1hs0z18sg5jyi17irgw8x7")))) (build-system pyproject-build-system) (arguments (list #:tests? #f ; tests are too computationally intensive @@ -2317,6 +2317,29 @@ uncertainties and are backed by strong theoretical guarantees thanks to conformal prediction methods intervals.") (license license:bsd-3))) +(define-public python-emcee + (package + (name "python-emcee") + (version "3.1.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "emcee" version)) + (sha256 + (base32 "1vbz67cwzig28dlndkm6g246p1vcvj6yy2w65z8cdyffigf1j3lf")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-numpy)) + (native-inputs (list python-coverage + python-pytest + python-pytest-cov + python-setuptools-scm)) + (home-page "https://emcee.readthedocs.io/en/stable/") + (synopsis "Ensemble sampling toolkit for MCMC") + (description + "@code{emcee} is a Python implementation of the affine-invariant ensemble +sampler for Markov chain Monte Carlo (MCMC).") + (license license:expat))) + (define-public python-statsmodels (package (name "python-statsmodels") @@ -2374,7 +2397,7 @@ inference for statistical models.") (define-public python-openturns (package (name "python-openturns") - (version "1.21") + (version "1.21.1") (source (origin (method git-fetch) @@ -2383,7 +2406,7 @@ inference for statistical models.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "05lbx8npvvk7jyakvfpgi9ggdp6cnzwv2hjmjrkji2s42axv0q6d")))) + (base32 "147pyh7j5nqp9bl9hfikcfzqj5qp95an0qrna9g5qq07md13c3if")))) (build-system cmake-build-system) (arguments (list @@ -2615,14 +2638,14 @@ R version.") (define-public r-checkmate (package (name "r-checkmate") - (version "2.2.0") + (version "2.3.0") (source (origin (method url-fetch) (uri (cran-uri "checkmate" version)) (sha256 (base32 - "064i6l0n4w4jncpnk5wnj6sxak0jirdz757iirglcxg8ayq19v4n")))) + "1m41idv7iwq6mby8dyvsbljj5jkyhj65k7caz2na17a83s2inwl8")))) (build-system r-build-system) (propagated-inputs (list r-backports)) @@ -2966,13 +2989,13 @@ tools to simplify the devolpment of R packages.") (define-public r-withr (package (name "r-withr") - (version "2.5.1") + (version "2.5.2") (source (origin (method url-fetch) (uri (cran-uri "withr" version)) (sha256 (base32 - "1kndhxl0fxn40v9yx0iglilani3ym3ywbjf6zbg1pnb52ncf0nm9")))) + "01a27nqlrrf1pws57hi9631f3aj33a9dashd640m5nlgf9nzmdnm")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -3317,13 +3340,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.3.1") + (version "2.3.2") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "1jil3wgfh1asfb9c4cr9qyr74wb9f87r7sa03kj187201hb3xlly")))) + "09vbx3akqws8a07ai6qbp3jn1w05qsmazl79wl2dyvvjpzs8b62x")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -3332,8 +3355,8 @@ a column in data frame.") r-cpp11 r-dbi r-memoise - r-plogr - r-pkgconfig)) + r-pkgconfig + r-plogr)) (native-inputs (list r-knitr)) (home-page "https://github.com/rstats-db/RSQLite") @@ -4711,13 +4734,13 @@ features present in other programming languages.") (define-public r-plotly (package (name "r-plotly") - (version "4.10.2") + (version "4.10.3") (source (origin (method url-fetch) (uri (cran-uri "plotly" version)) (sha256 (base32 - "0y2jiyfx895f15wcpizybssic4draw1vgvqz2b7f82z73319m01b")) + "13sxmanx2xck8dn0prn2fplgx4bafb7h2kk2wjmci21h8hk6qylb")) (modules '((guix build utils))) (snippet '(with-directory-excursion "inst/htmlwidgets/lib/" @@ -4964,7 +4987,12 @@ from within R.") (add-after 'mkdist 'no-mtune (lambda _ (substitute* "src/Makevars" - (("-mtune=native") ""))))))) + (("-mtune=native") "")))) + (add-after 'no-mtune 'use-c++11 + (lambda _ + (substitute* "src/Makevars" + (("-DUSE_BLAS_LIB" m) + (string-append m " -std=c++11")))))))) (native-inputs (list hevea perl @@ -5164,17 +5192,15 @@ tests for whether a value is missing, empty or contains only @code{NA} and (define-public r-gdata (package (name "r-gdata") - (version "2.19.0") + (version "3.0.0") (source (origin (method url-fetch) (uri (cran-uri "gdata" version)) (sha256 (base32 - "1lv3cz990f7m2bfcf62fjm6wz6zd2ycrci06b7mfd0xmcn3bwifi")))) + "0zxi0634dkgczw7gicj8r6mhb83cpkxhsy2iivz0b9v52y9bjmm4")))) (build-system r-build-system) - (inputs - (list perl)) (propagated-inputs (list r-gtools)) (home-page "https://cran.r-project.org/web/packages/gdata") @@ -5189,7 +5215,6 @@ including: @item character vector operations @item factor manipulation @item obtaining information about R objects -@item manipulating MS-Excel formatted files @item generating fixed-width format files @item extricating components of date and time objects @item operations on columns of data frames @@ -5703,14 +5728,14 @@ and resampling-based inference.") (define-public r-prabclus (package (name "r-prabclus") - (version "2.3-2") + (version "2.3-3") (source (origin (method url-fetch) (uri (cran-uri "prabclus" version)) (sha256 (base32 - "0hg4d7y1w18jpgvw10z8833bbbcnlkwiasx0wh6iwa2pnnybq8gl")))) + "1haq8dvvi21fdnzl7ykm28sif5nv9pybir96vrqfcmy3k8500p80")))) (build-system r-build-system) (propagated-inputs (list r-mass r-mclust)) @@ -7171,14 +7196,14 @@ or eta squared effect size.") (define-public r-logspline (package (name "r-logspline") - (version "2.1.20") + (version "2.1.21") (source (origin (method url-fetch) (uri (cran-uri "logspline" version)) (sha256 (base32 - "1nsrgz9sh9qg2fj0x7k48lqhpgzq1z78jfz89ckzp5xm4r8lpgcb")))) + "0xqbk3h28gkx3haj7hdg314616x673cmg9ia148g0q9j3zqkqflf")))) (properties `((upstream-name . "logspline"))) (build-system r-build-system) (native-inputs (list gfortran)) |