diff options
Diffstat (limited to 'gnu/packages/python.scm')
| -rw-r--r-- | gnu/packages/python.scm | 66 |
1 files changed, 54 insertions, 12 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 5d87c7486e..99e5bd9e0b 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -32,7 +32,7 @@ ;;; Copyright © 2016, 2017 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2016, 2017 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2016, 2017 Julien Lepiller <julien@lepiller.eu> -;;; Copyright © 2016, 2017 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2016, 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2017 Carlo Zancanaro <carlo@zancanaro.id.au> ;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com> @@ -2534,7 +2534,8 @@ interested parties to subscribe to events, or \"signals\".") ("python-blinker" ,python-blinker) ("python-unidecode" ,python-unidecode) ("python-six" ,python-six) - ("python-dateutil" ,python-dateutil))) + ("python-dateutil" ,python-dateutil) + ("python-markdown" ,python-markdown))) (home-page "http://getpelican.com/") (arguments `(;; XXX Requires a lot more packages to do unit tests :P @@ -4857,13 +4858,13 @@ of the structure, dynamics, and functions of complex networks.") (define-public snakemake (package (name "snakemake") - (version "4.2.0") + (version "4.4.0") (source (origin (method url-fetch) (uri (pypi-uri "snakemake" version)) (sha256 - (base32 "0mgl44q152ws40zj2vicqark5szyd73vqy9pf26g6hk6dk0y0c79")))) + (base32 "0g0paia4z7w3srnqdmavq3hrb2x7qnpf81jx50njl0p7y4y0j8jv")))) (build-system python-build-system) (arguments ;; TODO: Package missing test dependencies. @@ -6023,14 +6024,14 @@ versions of Python.") (define-public python-idna (package (name "python-idna") - (version "2.5") + (version "2.6") (source (origin (method url-fetch) (uri (pypi-uri "idna" version)) (sha256 (base32 - "1ara12a7k2zc69msa0arrvw00gn61a6i6by01xb3lkkc0h4cxd9w")))) + "13qaab6d0s15gknz8v3zbcfmbj6v86hn9pjxgkdf62ch13imssic")))) (build-system python-build-system) (home-page "https://github.com/kjd/idna") (synopsis "Internationalized domain names in applications") @@ -6859,13 +6860,13 @@ for atomic file system operations.") (define-public python-click-threading (package (name "python-click-threading") - (version "0.4.3") + (version "0.4.4") (source (origin (method url-fetch) (uri (pypi-uri "click-threading" version)) (sha256 (base32 - "0xs4bg2ws0zgyiplk312l049hi23c2zqf1g771rjhh5vr2msk4cg")))) + "1rsxc2fbkxlhwhlmxsdjzq3spn284l6rvjfcz9mbb17ibgdgmc5j")))) (build-system python-build-system) (propagated-inputs `(("python-click" ,python-click))) @@ -6878,13 +6879,13 @@ applications.") (define-public python-click-log (package (name "python-click-log") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (pypi-uri "click-log" version)) (sha256 (base32 - "1bjrfxji1yv4fj0g78ri2yfgn2wbivn8g69fxfinxvxpmighhshp")))) + "1r1x85023cslb2pwldd089jjk573mk3w78cnashs77wrx7yz8fj9")))) (build-system python-build-system) (propagated-inputs `(("python-click" ,python-click))) @@ -8600,14 +8601,14 @@ network support library.") (define-public python-ply (package (name "python-ply") - (version "3.9") + (version "3.10") (source (origin (method url-fetch) (uri (pypi-uri "ply" version)) (sha256 (base32 - "0gpl0yli3w03ipyqfrp3w5nf0iawhsq65anf5wwm2wf5p502jzhd")))) + "1jxsr1d2f732r6ljhvm827113dckwl6qwakfvpbdhcbhvpvlmscn")))) (build-system python-build-system) (home-page "http://www.dabeaz.com/ply/") (synopsis "Python Lex & Yacc") @@ -12296,3 +12297,44 @@ physical units, automatic derivatives, ...) whereas others are more domain-specific (e.g. netCDF and PDB support). The library is currently not actively maintained and works only with Python 2 and NumPy < 1.9.") (license license:cecill-c))) + +(define-public python2-mmtk + (package + (name "python2-mmtk") + (version "2.7.10") + (source + (origin + (method url-fetch) + (uri (string-append "https://bitbucket.org/khinsen/" + "mmtk/downloads/MMTK-" version ".tar.gz")) + (file-name (string-append "MMTK-" version ".tar.gz")) + (sha256 + (base32 + "1k4gsd50zja89dbzgy3aji7h4zpvbvdfrds7rxr3whqrsgcffnir")))) + (build-system python-build-system) + (native-inputs + `(("netcdf" ,netcdf))) + (propagated-inputs + `(("python-scientific" ,python2-scientific) + ("python-tkinter" ,python-2 "tk"))) + (arguments + `(#:python ,python-2 + #:tests? #f + #:phases + (modify-phases %standard-phases + (add-before 'build 'includes-from-scientific + (lambda* (#:key inputs #:allow-other-keys) + (mkdir-p "Include/Scientific") + (copy-recursively + (string-append + (assoc-ref inputs "python-scientific") + "/include/python2.7/Scientific") + "Include/Scientific")))))) + (home-page "http://dirac.cnrs-orleans.fr/MMTK") + (synopsis "Python library for molecular simulation") + (description "MMTK is a library for molecular simulations with an emphasis +on biomolecules. It provides widely used methods such as Molecular Dynamics +and normal mode analysis, but also basic routines for implementing new methods +for simulation and analysis. The library is currently not actively maintained +and works only with Python 2 and NumPy < 1.9.") + (license license:cecill-c))) |