diff options
Diffstat (limited to 'gnu/packages/python.scm')
| -rw-r--r-- | gnu/packages/python.scm | 394 |
1 files changed, 329 insertions, 65 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index f1dc2da050..3f1328ddf0 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -485,11 +485,10 @@ pidof, tty, taskset, pmap.") `(("python-py-bcrypt" ,python-py-bcrypt))) (arguments `(#:phases - (alist-cons-before - 'check 'set-PYTHON_EGG_CACHE - ;; some tests require access to "$HOME/.cython" - (lambda* _ (setenv "PYTHON_EGG_CACHE" "/tmp")) - %standard-phases))) + (modify-phases %standard-phases + (add-before 'check 'set-PYTHON_EGG_CACHE + ;; some tests require access to "$HOME/.cython" + (lambda* _ (setenv "PYTHON_EGG_CACHE" "/tmp") #t))))) (home-page "https://bitbucket.org/ecollins/passlib") (synopsis "Comprehensive password hashing framework") @@ -1079,12 +1078,10 @@ multiple Unicode code points, e.g. \"G\" + acute-accent) ("gmp" ,gmp))) (arguments `(#:phases - (alist-cons-before - 'build 'set-build-env - ;; pycrypto runs an autoconf configure script behind the scenes - (lambda _ - (setenv "CONFIG_SHELL" (which "bash"))) - %standard-phases))) + (modify-phases %standard-phases + (add-before 'build 'set-build-env + ;; pycrypto runs an autoconf configure script behind the scenes + (lambda _ (setenv "CONFIG_SHELL" (which "bash")) #t))))) (home-page "http://www.pycrypto.org/") (synopsis "Cryptographic modules for Python") (description @@ -1496,11 +1493,11 @@ other Python program.") (build-system python-build-system) (arguments `(#:python ,python-2 - #:phases (alist-replace - 'check - (lambda _ - (zero? (system* "./test.sh"))) - %standard-phases))) + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "./test.sh"))))))) (home-page "http://www.alcyone.com/software/empy/") (synopsis "Templating system for Python") (description @@ -1843,7 +1840,7 @@ standard library.") (define-public python2-unittest2 (package (inherit python-unittest2) (name "python2-unittest2") - (version "0.5.1") + (version "1.1.0") (source (origin (method url-fetch) @@ -1852,7 +1849,12 @@ standard library.") version ".tar.gz")) (sha256 (base32 - "0wbs4i4x3x7klr3v35ss6p9mcqz883i1xgcpkhvl7n2lyv6yhpda")))) + "0y855kmx7a8rnf81d3lh5lyxai1908xjp0laf4glwa4c8472m212")) + (patches + (search-patches "python2-unittest2-remove-argparse.patch")))) + (propagated-inputs + `(("python2-six" ,python2-six) + ("python2-traceback2" ,python2-traceback2))) (arguments `(#:python ,python-2 #:tests? #f)))) ; no setup.py test command @@ -3390,6 +3392,30 @@ sources.") (define-public python2-sphinx-rtd-theme (package-with-python2 python-sphinx-rtd-theme)) +(define-public python-guzzle-sphinx-theme + (package + (name "python-guzzle-sphinx-theme") + (version "0.7.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "guzzle_sphinx_theme" version)) + (sha256 + (base32 + "1rnkzrrsbnifn3vsb4pfaia3nlvgvw6ndpxp7lzjrh23qcwid34v")))) + (build-system python-build-system) + (propagated-inputs + `(("python-sphinx" ,python-sphinx))) + (home-page "https://github.com/guzzle/guzzle_sphinx_theme") + (synopsis "Sphinx theme used by Guzzle") + (description "This package provides guzzle_sphinx_theme, a theme for the +Sphinx documentation system, used by @uref{http://docs.guzzlephp.org, Guzzle} +and several other projects.") + (license license:expat))) + +(define-public python2-guzzle-sphinx-theme + (package-with-python2 python-guzzle-sphinx-theme)) + (define-public python-rst.linker (package (name "python-rst.linker") @@ -3717,24 +3743,27 @@ producing implementations of dynamic languages, emphasizing a clean separation between language specification and implementation aspects.") (license license:expat))) +;; NOTE: when upgrading numpy please make sure that python-pandas and +;; python-scipy still build, as these three packages are often used together. (define-public python-numpy (package (name "python-numpy") - (version "1.13.1") + (version "1.12.0") (source (origin (method url-fetch) - (uri (pypi-uri "numpy" version ".zip")) + (uri (string-append + "https://github.com/numpy/numpy/archive/v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1fsgkhh1vdkhmlz8vmdgxnj9n9yaanckxxzz9s0b4p08fqvjic69")))) + "025d4j4aakcp8w5i5diqh812cbbjgac7jszx1j56ivrbi1i8vv7d")))) (build-system python-build-system) (inputs `(("openblas" ,openblas) ("lapack" ,lapack))) (native-inputs - `(("unzip" ,unzip) - ("python-cython" ,python-cython) + `(("python-cython" ,python-cython) ("python-nose" ,python-nose) ("gfortran" ,gfortran))) (arguments @@ -3742,8 +3771,6 @@ between language specification and implementation aspects.") (modify-phases %standard-phases (add-before 'build 'set-environment-variables (lambda* (#:key inputs #:allow-other-keys) - ;; numpy's distutils uses $SHELL to run external commands. - (setenv "SHELL" "bash") (call-with-output-file "site.cfg" (lambda (port) (format port @@ -3762,6 +3789,11 @@ include_dirs = ~a/include (assoc-ref inputs "openblas") (assoc-ref inputs "lapack") (assoc-ref inputs "lapack")))) + ;; Make /gnu/store/...-bash-.../bin/sh the default shell, instead of + ;; /bin/sh. + (substitute* "numpy/distutils/exec_command.py" + (("(os.environ.get\\('SHELL', ')(/bin/sh'\\))" match match-start match-end) + (string-append match-start (assoc-ref inputs "bash") match-end))) ;; Use "gcc" executable, not "cc". (substitute* "numpy/distutils/system_info.py" (("c = distutils\\.ccompiler\\.new_compiler\\(\\)") @@ -3789,6 +3821,26 @@ capabilities.") (define-public python2-numpy (package-with-python2 python-numpy)) +(define-public python-numpy-next + (package (inherit python-numpy) + (name "python-numpy-next") + (version "1.13.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "numpy" version ".zip")) + (sha256 + (base32 + "1fsgkhh1vdkhmlz8vmdgxnj9n9yaanckxxzz9s0b4p08fqvjic69")))) + (native-inputs + `(("unzip" ,unzip) + ("python-cython" ,python-cython) + ("python-nose" ,python-nose) + ("gfortran" ,gfortran))))) + +(define-public python2-numpy-next + (package-with-python2 python-numpy-next)) + (define-public python-munch (package (name "python-munch") @@ -4139,14 +4191,14 @@ that client code uses to construct the grammar directly in Python code.") (define-public python-numexpr (package (name "python-numexpr") - (version "2.6.1") + (version "2.6.4") (source (origin (method url-fetch) (uri (pypi-uri "numexpr" version)) (sha256 (base32 - "01lsja72m32z0i5p8rwxbfyzk4mplh72k2a140nwh8vv4wpyfbnv")))) + "1kpnbb5d5n927113zccfibn16z7gidjipyac6kbbhzs0lnizkgph")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; no tests included (propagated-inputs @@ -4666,10 +4718,10 @@ as the original project seems to have been abandoned circa 2007.") ("python-pytest" ,python-pytest) ("python-mock" ,python-mock))) ;for tests (arguments - `(#:phases (alist-replace - 'check - (lambda _ (zero? (system* "py.test"))) - %standard-phases))) + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (zero? (system* "py.test"))))))) (home-page "http://www.sqlalchemy.org") (synopsis "Database abstraction library") (description @@ -4876,20 +4928,21 @@ You might also want to install the following optional dependencies: (define-public python-alembic (package (name "python-alembic") - (version "0.8.10") + (version "0.9.5") (source (origin (method url-fetch) (uri (pypi-uri "alembic" version)) (sha256 (base32 - "06br9sfqypnjlal6fsbnky3zb0askwcn3diz8k3kwa0qcblm0fqf")))) + "01gx2syqbaxh4hr9pf7pxhlb6p36qaf99140dy19lsx1paxb9p4b")))) (build-system python-build-system) (native-inputs `(("python-mock" ,python-mock) ("python-pytest-cov" ,python-pytest-cov))) (propagated-inputs - `(("python-sqlalchemy" ,python-sqlalchemy) + `(("python-dateutil" ,python-dateutil) + ("python-sqlalchemy" ,python-sqlalchemy) ("python-mako" ,python-mako) ("python-editor" ,python-editor))) (home-page "http://bitbucket.org/zzzeek/alembic") @@ -4906,17 +4959,17 @@ SQLAlchemy Database Toolkit for Python.") (define-public python-autopep8 (package (name "python-autopep8") - (version "1.2.4") + (version "1.3.2") (source (origin (method url-fetch) (uri (pypi-uri "autopep8" version)) (sha256 (base32 - "18parm383lfn42a00wklv3qf20p4v277f1x3cn58x019dqk1xqrq")))) + "1p9pa1ffg4iy96l918808jggg9a69iaka5awmj8xid36yc5mk0ky")))) (build-system python-build-system) (propagated-inputs - `(("python-pep8" ,python-pep8))) + `(("python-pycodestyle" ,python-pycodestyle))) (home-page "https://github.com/hhatto/autopep8") (synopsis "Format Python code according to the PEP 8 style guide") (description @@ -7520,10 +7573,7 @@ reading and writing MessagePack data.") (source (origin (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/source/n/netaddr/netaddr-" - version - ".tar.gz")) + (uri (pypi-uri "netaddr" version)) (sha256 (base32 "1zdfadvpq4lmcqzr383gywxn4xyn355kj1n3lk9q2l03vmyfrbiq")))) @@ -8583,10 +8633,10 @@ automatically detect a wide range of file encodings.") (native-inputs `(("python-pytest" ,python-pytest))) (arguments - `(#:phases (alist-replace - 'check - (lambda _ (zero? (system* "py.test"))) - %standard-phases))) + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (zero? (system* "py.test"))))))) (home-page "http://docopt.org") (synopsis "Command-line interface description language for Python") (description "This library allows the user to define a command-line @@ -9243,16 +9293,13 @@ for atomic file system operations.") (define-public python-requests-toolbelt (package (name "python-requests-toolbelt") - (version "0.6.2") + (version "0.8.0") (source (origin (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/" - "e1/a4/a94c037bc72ad70441aff1403d3243510d2542ddca7759faaeffeb11aefe/" - "requests-toolbelt-" version ".tar.gz")) + (uri (pypi-uri "requests-toolbelt" version)) (sha256 (base32 - "15q9nrgp85nqlr4kdz1zvj8z2npafi2sr12y7fqgxbkq28j1aci6")))) + "1dc7l42i4080r8i4m9fj51jx367lqkai170vrv7wd93gdj9k39gn")))) (build-system python-build-system) (native-inputs `(("python-betamax" ,python-betamax) @@ -9266,6 +9313,9 @@ with python-requests.") (home-page "https://github.com/sigmavirus24/requests-toolbelt") (license license:asl2.0))) +(define-public python2-requests-toolbelt + (package-with-python2 python-requests-toolbelt)) + (define-public python-click-threading (package (name "python-click-threading") @@ -9840,10 +9890,11 @@ concurrent.futures package from Python 3.2") ("python-mock" ,python-mock) ("python-tornado" ,python-tornado))) (propagated-inputs - `(;; extra packages for https security + `(;; These 5 inputs are used to build urrlib3[secure] ("python-certifi" ,python-certifi) - ("python-ndg-httpsclient" ,python-ndg-httpsclient) - ("python-pyasn1" ,python-pyasn1) + ("python-cryptography" ,python-cryptography) ; + ("python-idna" ,python-idna) + ("python-ipaddress" ,python-ipaddress) ("python-pyopenssl" ,python-pyopenssl))) (home-page "https://urllib3.readthedocs.org/") (synopsis "HTTP library with thread-safe connection pooling") @@ -9926,14 +9977,14 @@ Pytest but stripped of Pytest specific details.") (define-public python-tox (package (name "python-tox") - (version "2.8.0") + (version "2.8.1") (source (origin (method url-fetch) (uri (pypi-uri "tox" version)) (sha256 (base32 - "00lrql2cfzhb712v70inac6mrgdv8s8fmvz7qpggkk623hkm2pgc")))) + "1drp6mwm8wdypjym15ia8lwjxbhcksb9vzxg4ay5dh4ji57by2ny")))) (build-system python-build-system) (arguments ;; FIXME: Tests require pytest-timeout, which itself requires @@ -10020,14 +10071,14 @@ interface to the Amazon Web Services (AWS) API.") (define-public awscli (package (name "awscli") - (version "1.11.151") + (version "1.11.164") (source (origin (method url-fetch) (uri (pypi-uri name version)) (sha256 (base32 - "0h6rirbfy0f9cxm7ikll0kr720dircfmxf2vslmhn4n325831wsp")))) + "05r8cw7i7ff6barpmyxxk3i52gzb1xyxwj8isynmiyqlmk3c9r8w")))) (build-system python-build-system) (propagated-inputs `(("python-colorama" ,python-colorama) @@ -11468,8 +11519,21 @@ to occurrences in strings and comments.") (base32 "0i283z1pivmir61z8kbiycigc94l61v33ygzkhczf1ifq7cppyds")))) (build-system python-build-system) + (inputs + `(("file" ,file))) (arguments - '(#:tests? #f)) ; TODO: Requires many libraries not in Guix. + '(#:phases + (modify-phases %standard-phases + ;; 'file' is used for detection of configuration file encoding + ;; let's make link the dependency to particular input + (add-before 'build 'patch-file-path + (lambda* (#:key inputs #:allow-other-keys) + (let ((file-path (assoc-ref inputs "file"))) + (substitute* "py3status/parse_config.py" + (("check_output\\(\\['file'") + (string-append "check_output(['" file-path "/bin/file'"))) + #t)))) + #:tests? #f)) ; TODO: Requires many libraries not in Guix. (home-page "https://github.com/ultrabug/py3status") (synopsis "Extensible i3status wrapper written in Python") (description "py3status is an i3status wrapper which extends i3status @@ -11913,13 +11977,13 @@ objects, patterned after the Mocha library for Ruby.") (define-public python-arrow (package (name "python-arrow") - (version "0.8.0") + (version "0.10.0") (source (origin (method url-fetch) (uri (pypi-uri "arrow" version)) (sha256 (base32 - "1bz7hkdgpqcjs866y58z8jywpy7al0f4rxdr00bh2l5qddyw245j")))) + "08n7q2l69hlainds1byd4lxhwrq7zsw7s640zkqc3bs5jkq0cnc0")))) (build-system python-build-system) (native-inputs `(;; For testing @@ -13400,14 +13464,14 @@ useful as a validator for JSON data.") (define-public python-aniso8601 (package (name "python-aniso8601") - (version "1.1.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (pypi-uri "aniso8601" version)) (sha256 (base32 - "1k5mjg9iqbjfslb5prrsfz7dhlvi6s35p1jxq8dm87w1b7dn5i2g")))) + "1waj54iv3n3lw1fapbz8a93yjgrybgpc86wif5baxdh1arpj9df3")))) (build-system python-build-system) (propagated-inputs `(("python-dateutil" ,python-dateutil))) @@ -13419,6 +13483,9 @@ useful as a validator for JSON data.") "This package contains a library for parsing ISO 8601 datetime strings.") (license license:bsd-3))) +(define-public python2-aniso8601 + (package-with-python2 python-aniso8601)) + (define-public python-flask-restful (package (name "python-flask-restful") @@ -15888,14 +15955,14 @@ complex datatypes to and from native Python datatypes.") (define-public python-apispec (package (name "python-apispec") - (version "0.22.0") + (version "0.25.3") (source (origin (method url-fetch) (uri (pypi-uri "apispec" version)) (sha256 (base32 - "0y3jxmgp2d24am3hxl40f5rw9abb0r8037sagax3dv64h4n1azwq")))) + "0kxa8723zbisx10363yh4mmmn4higxrspymbjfz5zq8f644zagm9")))) (build-system python-build-system) (propagated-inputs `(("python-pyyaml" ,python-pyyaml))) @@ -16302,3 +16369,200 @@ Templates.") (define-public python2-uritemplate (package-with-python2 python-uritemplate)) + +(define-public python-pydiff + (package + (name "python-pydiff") + (version "0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pydiff" version)) + (sha256 + (base32 + "1als83h9w0gab24ipyna6khm390qmpnpkc5jksmdbs2xc8hp2z44")))) + (build-system python-build-system) + (home-page "https://github.com/myint/pydiff") + (synopsis "Library to diff two Python files at the bytecode level") + (description + "@code{pydiff} makes it easy to look for actual code changes while +ignoring formatting changes.") + (license license:expat))) + +(define-public python2-pydiff + (package-with-python2 python-pydiff)) + +(define-public python-nose-timer + (package + (name "python-nose-timer") + (version "0.7.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nose-timer" version)) + (patches + (search-patches + ;; This patch will not be needed in the next version. + ;; It is taken from the master branch. + "python-nose-timer-drop-ordereddict.patch")) + (sha256 + (base32 + "1s32ymsnby8lz2qk55ifj9zi50dqcg6swnj5cz2rmwxg2jsslsxp")))) + (build-system python-build-system) + (propagated-inputs + `(("python-nose" ,python-nose) + ("python-termcolor" ,python-termcolor))) + (home-page "https://github.com/mahmoudimus/nose-timer") + (synopsis "Timer plugin for nosetests") + (description "Shows how much time was needed to run individual tests.") + (license license:expat))) + +(define-public python2-nose-timer + (package-with-python2 python-nose-timer)) + +(define-public python-tqdm + (package + (name "python-tqdm") + (version "4.15.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tqdm" version)) + (sha256 + (base32 + "0lwrmby8qz23gvqwkpivfrv4q8nfh90cz9ml6slwvwmcxxsdrhbf")))) + (build-system python-build-system) + (native-inputs + `(("python-flake8" ,python-flake8) + ("python-nose" ,python-nose) + ("python-nose-timer" ,python-nose-timer) + ("python-coverage" ,python-coverage) + ("python-virtualenv" ,python-virtualenv))) + (home-page "https://github.com/tqdm/tqdm") + (synopsis "Fast, extensible progress meter") + (description + "Make loops show a progress bar on the console by just wrapping any +iterable with @code{|tqdm(iterable)|}. Offers many options to define +design and layout.") + (license (list license:mpl2.0 license:expat)))) + +(define-public python2-tqdm + (package-with-python2 python-tqdm)) + +(define-public python-pkginfo + (package + (name "python-pkginfo") + (version "1.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pkginfo" version)) + (sha256 + (base32 + "17pqjfpq3c6xzdmk8pski6jcjgjv78q00zjf2bgzb668pzm6l6mv")))) + (build-system python-build-system) + (arguments + ;; The tests are broken upstream. + '(#:tests? #f)) + (home-page + "https://code.launchpad.net/~tseaver/pkginfo/trunk") + (synopsis + "Query metadatdata from sdists, bdists, and installed packages") + (description + "API to query the distutils metadata written in @file{PKG-INFO} inside a +source distriubtion (an sdist) or a binary distribution (e.g., created by +running bdist_egg). It can also query the EGG-INFO directory of an installed +distribution, and the *.egg-info stored in a \"development checkout\" (e.g, +created by running @code{python setup.py develop}).") + (license license:expat))) + +(define-public python2-pkginfo + (package-with-python2 python-pkginfo)) + +(define-public python-twine + (package + (name "python-twine") + (version "1.9.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "twine" version)) + (sha256 + (base32 + "1ay1b6kdq6k4bfbjsvf6ymj41wrgpvinhxndb09355pwhxwmp96a")))) + (build-system python-build-system) + (propagated-inputs + `(("python-tqdm" ,python-tqdm) + ("python-pkginfo", python-pkginfo) + ("python-requests" ,python-requests) + ("python-requests-toolbelt" ,python-requests-toolbelt))) + (home-page "https://github.com/pypa/twine") + (synopsis "Collection of utilities for interacting with PyPI") + (description + "@code{twine} currently supports registering projects and uploading +distributions. It authenticates the user over HTTPS, allows them to pre-sign +their files and supports any packaging format (including wheels).") + (license license:asl2.0))) + +(define-public python2-twine + (package-with-python2 python-twine)) + +(define-public python-linecache2 + (package + (name "python-linecache2") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "linecache2" version)) + (sha256 + (base32 + "0z79g3ds5wk2lvnqw0y2jpakjf32h95bd9zmnvp7dnqhf57gy9jb")))) + (build-system python-build-system) + (arguments + `(;; The tests depend on unittest2, and our version is a bit too old. + #:tests? #f)) + (native-inputs + `(("python-pbr" ,python-pbr))) + (home-page + "https://github.com/testing-cabal/linecache2") + (synopsis "Backports of the linecache module") + (description + "The linecache module allows one to get any line from any file, while +attempting to optimize internally, using a cache, the common case where many +lines are read from a single file.") + (license license:psfl))) + +(define-public python2-linecache2 + (package-with-python2 python-linecache2)) + +(define-public python-traceback2 + (package + (name "python-traceback2") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "traceback2" version)) + (sha256 + (base32 + "0c1h3jas1jp1fdbn9z2mrgn3jj0hw1x3yhnkxp7jw34q15xcdb05")))) + (build-system python-build-system) + (arguments + `(;; python-traceback2 and python-unittest2 depend on one another. + #:tests? #f)) + (native-inputs + `(("python-pbr" ,python-pbr))) + (propagated-inputs + `(("python-linecache2" ,python-linecache2))) + (home-page + "https://github.com/testing-cabal/traceback2") + (synopsis "Backports of the traceback module") + (description + "This module provides a standard interface to extract, format and print +stack traces of Python programs. It exactly mimics the behavior of the Python +interpreter when it prints a stack trace.") + (license license:psfl))) + +(define-public python2-traceback2 + (package-with-python2 python-traceback2)) |