diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 2548 |
1 files changed, 2065 insertions, 483 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index f8bb943122..cd10f304c8 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -7,14 +7,14 @@ ;;; Copyright © 2014, 2015 Federico Beffa <beffa@fbengineering.ch> ;;; Copyright © 2015 Omar Radwan <toxemicsquire4@gmail.com> ;;; Copyright © 2015 Pierre-Antoine Rault <par@rigelk.eu> -;;; Copyright © 2015-2023 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015-2024 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2016, 2020 Christine Lemmer-Webber <cwebber@dustycloud.org> ;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr> ;;; Copyright © 2015, 2016 David Thompson <davet@gnu.org> ;;; Copyright © 2015, 2016, 2017, 2019, 2022 Leo Famulari <leo@famulari.name> ;;; Copyright © 2015, 2017 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2015, 2016 Erik Edrosa <erik.edrosa@gmail.com> -;;; Copyright © 2015-2023 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015-2024 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2015, 2017, 2020 Kyle Meyer <kyle@kyleam.com> ;;; Copyright © 2015, 2016 Chris Marusich <cmmarusich@gmail.com> ;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org> @@ -29,7 +29,7 @@ ;;; Copyright © 2016-2023 Marius Bakke <marius@gnu.org> ;;; Copyright © 2016, 2017, 2021, 2022 Stefan Reichör <stefan@xsteve.at> ;;; Copyright © 2016, 2017, 2019 Alex Vong <alexvong1995@gmail.com> -;;; Copyright © 2016–2018, 2021–2023 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2016–2018, 2021–2024 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2016, 2017, 2018, 2020, 2021 Julien Lepiller <julien@lepiller.eu> ;;; Copyright © 2016–2022 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> @@ -49,7 +49,7 @@ ;;; Copyright © 2018 Mathieu Lirzin <mthl@gnu.org> ;;; Copyright © 2018 Adam Massmann <massmannak@gmail.com> ;;; Copyright © 2016, 2018 Tomáš Čech <sleep_walker@gnu.org> -;;; Copyright © 2018-2023 Nicolas Goaziou <mail@nicolasgoaziou.fr> +;;; Copyright © 2018-2024 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2018, 2019, 2021, 2023 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2018, 2019, 2020, 2021, 2022, 2023 Maxim Cournoyer <maxim.cournoyer@gmail.com> @@ -63,7 +63,7 @@ ;;; Copyright © 2019, 2020 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2019, 2020, 2021, 2022, 2023 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2019 Jacob MacDonald <jaccarmac@gmail.com> -;;; Copyright © 2019-2021, 2023 Giacomo Leidi <goodoldpaul@autistici.org> +;;; Copyright © 2019-2021, 2023, 2024 Giacomo Leidi <goodoldpaul@autistici.org> ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz> ;;; Copyright © 2019, 2020, 2021, 2022 Tanguy Le Carrour <tanguy@bioneland.org> ;;; Copyright © 2019, 2021-2023 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> @@ -80,7 +80,7 @@ ;;; Copyright © 2020 Josh Holland <josh@inv.alid.pw> ;;; Copyright © 2020 Yuval Kogman <nothingmuch@woobling.org> ;;; Copyright © 2020, 2022 Michael Rohleder <mike@rohleder.de> -;;; Copyright © 2020, 2021, 2022, 2023 Vinicius Monego <monego@posteo.net> +;;; Copyright © 2020, 2021, 2022, 2023, 2024 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Guy Fleury Iteriteka <gfleury@disroot.org> ;;; Copyright © 2020 Hendursaga <hendursaga@yahoo.com> ;;; Copyright © 2020 Malte Frank Gerdes <malte.f.gerdes@gmail.com> @@ -94,7 +94,7 @@ ;;; Copyright © 2020, 2021 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2020 EuAndreh <eu@euandre.org> ;;; Copyright © 2021, 2022 Morgan Smith <Morgan.J.Smith@outlook.com> -;;; Copyright © 2021-2023 Sharlatan Hellseher <sharlatanus@gmail.com> +;;; Copyright © 2021-2024 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; Copyright © 2021 Ellis Kenyő <me@elken.dev> ;;; Copyright © 2021 LibreMiami <packaging-guix@libremiami.org> ;;; Copyright © 2021 Xinglu Chen <public@yoctocell.xyz> @@ -108,7 +108,7 @@ ;;; Copyright © 2021 Simon Streit <simon@netpanic.org> ;;; Copyright © 2021, 2022, 2023 Daniel Meißner <daniel.meissner-i4k@ruhr-uni-bochum.de> ;;; Copyright © 2021, 2022 Pradana Aumars <paumars@courrier.dev> -;;; Copyright © 2021, 2022, 2023 Felix Gruber <felgru@posteo.net> +;;; Copyright © 2021–2024 Felix Gruber <felgru@posteo.net> ;;; Copyright © 2021 Sébastien Lerique <sl@eauchat.org> ;;; Copyright © 2021 Raphaël Mélotte <raphael.melotte@mind.be> ;;; Copyright © 2021 ZmnSCPxj <ZmnSCPxj@protonmail.com> @@ -119,7 +119,7 @@ ;;; Copyright © 2022 Evgeny Pisemsky <evgeny@pisemsky.com> ;;; Copyright © 2022 drozdov <drozdov@portalenergy.tech> ;;; Copyright © 2022 Peter Polidoro <peter@polidoro.io> -;;; Copyright © 2022 Wamm K. D. <jaft.r@outlook.com> +;;; Copyright © 2022, 2023 Wamm K. D. <jaft.r@outlook.com> ;;; Copyright © 2022 Jai Vetrivelan <jaivetrivelan@gmail.com> ;;; Copyright © 2022 Artyom V. Poptsov <poptsov.artyom@gmail.com> ;;; Copyright © 2022 Paul A. Patience <paul@apatience.com> @@ -136,6 +136,7 @@ ;;; Copyright © 2023 Amade Nemes <nemesamade@gmail.com> ;;; Copyright © 2023 Bruno Victal <mirai@makinata.eu> ;;; Copyright © 2023 Kaelyn Takata <kaelyn.alexi@protonmail.com> +;;; Copyright © 2023 dan <i@dan.games> ;;; Copyright © 2023 Dominik Delgado Steuter <d@delgado.nrw> ;;; Copyright © 2023 Ivan Vilata-i-Balaguer <ivan@selidor.net> ;;; Copyright © 2023 Ontje Lünsdorf <ontje.luensdorf@dlr.de> @@ -145,7 +146,11 @@ ;;; Copyright © c4droid <c4droid@foxmail.com> ;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2023 Attila Lendvai <attila@lendvai.name> -;;; Copyright © 2023 Troy Figiel <troy@troyfigiel.com> +;;; Copyright © 2023, 2024 Troy Figiel <troy@troyfigiel.com> +;;; Copyright © 2024 Timothee Mathieu <timothee.mathieu@inria.fr> +;;; Copyright © 2024 Ian Eure <ian@retrospec.tv> +;;; Copyright © 2024 Adriel Dumas--Jondeau <leirda@disroot.org> +;;; Copyright © 2024 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -174,11 +179,13 @@ #:use-module (gnu packages base) #:use-module (gnu packages bash) #:use-module (gnu packages bdw-gc) + #:use-module (gnu packages build-tools) #:use-module (gnu packages check) #:use-module (gnu packages cmake) #:use-module (gnu packages compression) #:use-module (gnu packages cpp) #:use-module (gnu packages crates-io) + #:use-module (gnu packages crates-windows) #:use-module (gnu packages crypto) #:use-module (gnu packages databases) #:use-module (gnu packages dbm) @@ -187,6 +194,7 @@ #:use-module (gnu packages djvu) #:use-module (gnu packages docker) #:use-module (gnu packages documentation) + #:use-module (gnu packages elf) #:use-module (gnu packages enchant) #:use-module (gnu packages file) #:use-module (gnu packages fonts) @@ -224,6 +232,7 @@ #:use-module (gnu packages man) #:use-module (gnu packages markup) #:use-module (gnu packages maths) + #:use-module (gnu packages messaging) #:use-module (gnu packages monitoring) #:use-module (gnu packages multiprecision) #:use-module (gnu packages ncurses) @@ -256,6 +265,7 @@ #:use-module (gnu packages shells) #:use-module (gnu packages sphinx) #:use-module (gnu packages ssh) + #:use-module (gnu packages statistics) #:use-module (gnu packages swig) #:use-module (gnu packages tcl) #:use-module (gnu packages terminals) @@ -275,6 +285,7 @@ #:use-module (guix build-system cargo) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) + #:use-module (guix build-system meson) #:use-module (guix build-system pyproject) #:use-module (guix build-system python) #:use-module (guix download) @@ -285,6 +296,51 @@ #:use-module (srfi srfi-1) #:use-module (srfi srfi-26)) +(define-public python-apprise + (package + (name "python-apprise") + (version "1.7.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "apprise" version)) + (sha256 + (base32 "0wvs1k71fipn617y9wsdcvwcgg2pd0nvriarlwl4438la4086ppg")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-certifi + python-click + python-dataclasses + python-markdown + python-pyyaml + python-requests + python-requests-oauthlib)) + (native-inputs (list python-babel + python-coverage + python-cryptography + python-flake8 + python-paho-mqtt + python-pytest + python-pytest-cov + python-pytest-mock + python-pytest-xdist + python-wheel)) + (arguments + (list + #:phases #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (delete-file "test/test_plugin_macosx.py") + (invoke "pytest"))))))) + (home-page "https://github.com/caronc/apprise") + (synopsis + "Push notification Python library that works with many platforms") + (description + "Apprise is a Python library that allows sending push notifications to a broad +range of notification services, such as Telegram, Discord, Slack, Amazon SNS, +Gotify, etc.") + (license license:bsd-2))) + (define-public python-xmldiff (package (name "python-xmldiff") @@ -398,6 +454,35 @@ Jupytext are: ") (license license:expat))) +(define-public python-concurrent-log-handler + (package + (name "python-concurrent-log-handler") + (version "0.9.25") + ;; No tests in the PyPI tarball. + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Preston-Landers/concurrent-log-handler") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0jp4zkm0idfdsrq3jzb52iqfkh6xzm7sacz1sa34ffnkyqdk3xzh")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-portalocker)) + (native-inputs (list python-hatchling python-pytest)) + (home-page "https://github.com/Preston-Landers/concurrent-log-handler") + (synopsis + "Additional log handler for Python's standard @code{logging} package") + (description + "This package provides an additional log handler for Python's standard +@code{logging} package (PEP 282). This handler will write log events to a log +file which is rotated when the log file reaches a certain size. Multiple +processes can safely write to the same log file concurrently and rotated logs +can be gzipped if desired. An optional threaded queue logging handler is +provided to perform logging in the background.") + (license license:asl2.0))) + (define-public python-logzero (package (name "python-logzero") @@ -536,6 +621,159 @@ workspaces. @end itemize") (license license:gpl3+))) +(define-public python-databind-core + (package + (name "python-databind-core") + (version "4.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "databind.core" version)) + (sha256 + (base32 "130hr19kbzizx9n2q7cwfzfk20ii3cqmqjrzb16psnafll303k2d")) + (snippet + #~(begin (use-modules (guix build utils)) + ;; The problem with python-typing-extensions >= 4.7 is only + ;; with python-3.7. + (substitute* "pyproject.toml" + ((",<4.7.*") "\"\n")))))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'install 'fix-name + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((sitedir (site-packages inputs outputs)) + (dist-info + (string-append sitedir "/databind_core-" #$version ".dist-info"))) + (substitute* (string-append dist-info "/METADATA") + (("Name: databind-core") + "Name: databind.core")) + (substitute* (string-append dist-info "/RECORD") + (("databind_core") "databind.core")) + (rename-file dist-info + (string-append sitedir + "/databind.core-" + #$version ".dist-info")))))))) + (propagated-inputs + (list python-deprecated + python-nr-date + python-nr-stream + python-typeapi + python-typing-extensions)) + (native-inputs + (list python-poetry-core python-pytest)) + (home-page "https://niklasrosenstein.github.io/python-databind/core/") + (synopsis + "Library for de-/serializing Python dataclasses") + (description + "Databind is a library inspired by jackson-databind to de-/serialize +Python dataclasses.") + (license license:expat))) + +(define-public python-databind-json + (package + (name "python-databind-json") + (version "4.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "databind.json" version)) + (sha256 + (base32 "1lm864d7arfq0pw64hyc83bwn1z94wjg7a22q1xf0qkjynqs70gg")) + (snippet + #~(begin (use-modules (guix build utils)) + ;; The problem with python-typing-extensions >= 4.7 is only + ;; with python-3.7. + (substitute* "pyproject.toml" + ((",<4.7.*") "\"\n")))))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'install 'fix-name + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((sitedir (site-packages inputs outputs)) + (dist-info + (string-append sitedir "/databind_json-" #$version ".dist-info"))) + (substitute* (string-append dist-info "/METADATA") + (("Name: databind-json") + "Name: databind.json")) + (substitute* (string-append dist-info "/RECORD") + (("databind_json") "databind.json")) + (rename-file dist-info + (string-append sitedir + "/databind.json-" + #$version ".dist-info")))))))) + (propagated-inputs + (list python-databind-core python-nr-date + python-typeapi python-typing-extensions)) + (native-inputs (list python-poetry-core python-pytest)) + (home-page "https://niklasrosenstein.github.io/python-databind/json/") + (synopsis + "De-/serialize Python dataclasses to or from JSON payloads") + (description + "The @code{databind.json} package implements the de-/serialization to or +from JSON payloads using the @code{databind.core} framework.") + (license license:expat))) + +(define-public python-docspec + (package + (name "python-docspec") + (version "2.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "docspec" version)) + (sha256 + (base32 "1zqmdrc6k8pprra8p3wpzq2ml2gph1cfjmsyg07f8b8fvizffm28")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #false)) ;there are none + (propagated-inputs + (list python-databind-core + python-databind-json + python-deprecated)) + (native-inputs + (list python-poetry-core)) + (home-page "https://github.com/NiklasRosenstein/python-docspec") + (synopsis "Represent API documentation of programming languages") + (description + "Docspec is a JSON object specification for representing API +documentation of programming languages.") + (license license:expat))) + +(define-public python-docspec-python + (package + (name "python-docspec-python") + (version "2.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "docspec_python" version)) + (sha256 + (base32 "0n8m52vxmlvkj7p5jmd4rfdks65rrp4q4vzak44y6kbg9l5qa6y4")))) + (build-system pyproject-build-system) + (arguments + (list + #:tests? #false ;there are none + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + ;; We don't have black 23. + (substitute* "pyproject.toml" + (("23.1.0") "22.3.0"))))))) + (propagated-inputs (list python-black python-docspec python-nr-util)) + (native-inputs (list python-poetry-core)) + (home-page "https://github.com/NiklasRosenstein/docspec/") + (synopsis "Produce docspec data from Python source code") + (description + "This package provides a parser based on @code{lib2to3} producing +@code{docspec} data from Python source code.") + (license license:expat))) + (define-public python-fire (package (name "python-fire") @@ -588,6 +826,7 @@ and variables you'll need already imported and created. (build-system pyproject-build-system) (arguments (list + #:tests? #false ;there are none #:phases '(modify-phases %standard-phases (add-after 'unpack 'remove-invalid-syntax @@ -689,6 +928,7 @@ features of the Python's built-in dict.") (base32 "05zf0xn7ab40dan213fwbp1z4rybih8dphf9mzb2ddmbafxq41mv")))) (build-system pyproject-build-system) + (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-matplotlib python-numpy)) (home-page "https://github.com/Phlya/adjustText") (synopsis "Adjust text position in matplotlib plots to minimize overlaps") @@ -863,6 +1103,46 @@ as functions or string constants to form colored terminal output.") into dataclasses.") (license license:expat))) +(define-public python-contourpy + (package + (name "python-contourpy") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "contourpy" version)) + (sha256 + (base32 "088bhyh6m6q0h637wiq2paqhwn76hqvvbhqwacfx4a1qhv1lcc75")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + ;; All these tests require matplotlib, but matplotlib requires contourpy + ;; now. + '(list "-k" "not test_mypy" + "--ignore=tests/test_config.py" + "--ignore=tests/test_filled.py" + "--ignore=tests/test_lines.py" + "--ignore=tests/test_renderer.py"))) + (propagated-inputs (list python-mypy + python-numpy + python-pillow + python-pytest + python-pytest-cov + python-pytest-xdist + python-selenium + python-sphinx + python-sphinx-copybutton + python-wurlitzer)) + (native-inputs (list meson-python pybind11-2.10 pkg-config)) + (home-page "https://contourpy.readthedocs.io/") + (synopsis + "Python library for calculating contours of 2D quadrilateral grids") + (description + "ContourPy is a Python library for calculating contours of 2D +quadrilateral grids. It is written in C++11 and wrapped using pybind11.") + (license license:bsd-3))) + (define-public python-yaspin (package (name "python-yaspin") @@ -886,19 +1166,29 @@ during long operations.") (define-public python-lunr (package (name "python-lunr") - (version "0.6.0") + (version "0.7.0.post1") (source (origin (method url-fetch) (uri (pypi-uri "lunr" version)) (sha256 - (base32 "106akalywfmnypzkdrhgz4n4740a8xayspybsw59kq06vz8i2qrc")))) - (build-system python-build-system) + (base32 "1njb23lw619ppidqdzygdrscna4z15n9xjc4cc7yxiskkgsriz00")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + '(list "-k" "not TestLanguageSupport" + "--ignore-glob=tests/acceptance_tests/*"))) (native-inputs - (list python-mock python-pytest)) + (list python-coverage + python-hatch-fancy-pypi-readme + python-hatchling + python-pytest + python-pytest-timeout + python-tox)) (propagated-inputs - (list python-nltk-3.4)) + (list python-importlib-metadata python-typing-extensions)) (home-page "https://github.com/yeraydiazdiaz/lunr.py") (synopsis "Full-text search library") @@ -1124,10 +1414,26 @@ variables into the markdown template") (substitute* "tests/test_bugs.py" (("def test_change_user") "def _do_not_test_change_user") (("def test_lost_connection") "def _do_not_test_lost_connection") - (("def test_kill_query") "def _do_not_test_kill_query")) + (("def test_kill_query") "def _do_not_test_kill_query") + ;; These all fail because of expired certificates. + (("def test_cext_verify_server_certificate") + "def _do_not_test_cext_verify_server_certificate") + (("def test_pure_verify_server_certificate") + "def _do_not_test_pure_verify_server_certificate") + (("def test_verify_server_name_cext_cnx") + "def _do_not_test_verify_server_name_cext_cnx") + (("def test_verify_server_name_pure_cnx") + "def _do_not_test_verify_server_name_pure_cnx")) (substitute* "tests/test_connection.py" (("def test_allow_local_infile_in_path") - "def _do_not_test_allow_local_infile_in_path")) + "def _do_not_test_allow_local_infile_in_path") + ;; This fails because of expired certificates. + (("def test_connect_with_unix_socket") + "def _do_not_test_connect_with_unix_socket")) + (substitute* "tests/test_mysqlx_connection.py" + ;; This fails because of expired certificates. + (("def test_ssl_connection") + "def _do_not_test_ssl_connection")) (substitute* "tests/test_constants.py" (("def test_deprecated") "def _do_not_test_deprecated")) @@ -1223,30 +1529,30 @@ Markdown. All extensions are found under the module namespace of pymdownx.") (define-public python-pint (package (name "python-pint") - (version "0.22") + (version "0.23") (source (origin (method url-fetch) (uri (pypi-uri "Pint" version)) (sha256 (base32 - "0cs4lsvngrkfzpnrmxcwz728m47y0xbw1knksz51cc6gpdm9y4rd")))) + "1d69dqs0j907x4hgz2k8f3zjzhgs9zvlw2k0gi955g3dc28rnl71")))) (build-system pyproject-build-system) (arguments - ;; This single test tries to write to $HOME/.cache/pint. - (list #:test-flags #~'("-k" "not test_auto"))) - (native-inputs - (list python-dask - python-distributed - python-importlib-metadata - python-pytest ;for pytest-subtests - python-pytest-cov - python-pytest-mpl - python-pytest-subtests - python-setuptools-scm - python-sparse - python-uncertainties - python-xarray)) - (propagated-inputs (list python-typing-extensions)) + (list + #:test-flags + '(list "-k" (string-append + ;; This test tries to write to $HOME/.cache/pint. + "not test_auto" + ;; Fails with "Group USCSLengthInternational already + ;; present in registry" + " and not test_load_definitions_stage_2")))) + (native-inputs + (list python-pytest python-pytest-benchmark python-pytest-cov + python-pytest-mpl python-pytest-subtests + python-setuptools-scm)) + (propagated-inputs + (list python-typing-extensions + python-uncertainties)) (home-page "https://github.com/hgrecco/pint") (synopsis "Physical quantities module") (description @@ -1429,6 +1735,87 @@ generator MkDocs.") bindings to the C++ random forest implementation, ranger, using Cython.") (license license:gpl3+))) +(define-public python-nr-date + (package + (name "python-nr-date") + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nr_date" version)) + (sha256 + (base32 "1rnjyykjp41mqz6h1vx18jblq97gi5m5x7dgasyaihnd7fhswhq6")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #false)) ;there are none + (propagated-inputs (list python-dataclasses)) + (native-inputs (list python-poetry-core)) + (home-page "https://github.com/NiklasRosenstein/python-nr.date") + (synopsis "Fast, regex-based date parsing library in plain Python") + (description "This package provides a fast, regex-based date parsing +library in pure Python.") + (license license:expat))) + +(define-public python-nr-stream + (package + (name "python-nr-stream") + (version "1.1.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nr_stream" version)) + (sha256 + (base32 "0rag4vbjnalkyfcarx6yipn11ih2hmc3pfldava4c6n6pz31c0pb")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #false)) ;there are none + (native-inputs (list python-poetry-core)) + (home-page "https://github.com/NiklasRosenstein/python-nr.stream") + (synopsis "Stream and Optional classes for Python") + (description "This package provides a @code{Stream} and @code{Optional} +class.") + (license license:expat))) + +(define-public python-nr-util + (package + (name "python-nr-util") + (version "0.8.12") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nr.util" version)) + (sha256 + (base32 "1x0l4811dskwrk83l2xzdcldx2iazlrx5wxkg41jz7fr6ch9qm54")))) + (build-system pyproject-build-system) + (arguments + (list + #:tests? #false ;there are none + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'patch-build-system + (lambda _ + (substitute* "pyproject.toml" + (("^config =.*") "config = []\n")))) + (add-after 'install 'fix-name + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((sitedir (site-packages inputs outputs)) + (dist-info + (string-append sitedir "/nr_util-" #$version ".dist-info"))) + (substitute* (string-append dist-info "/METADATA") + (("Name: nr-util") + "Name: nr.util")) + (substitute* (string-append dist-info "/RECORD") + (("nr_util") "nr.util")) + (rename-file dist-info + (string-append sitedir + "/nr.util-" + #$version ".dist-info")))))))) + (propagated-inputs (list python-deprecated python-typing-extensions)) + (native-inputs (list python-poetry-core)) + (home-page "https://github.com/NiklasRosenstein/python-nr.util") + (synopsis "General purpose Python utility library") + (description "This package provides a general purpose Python utility +library.") + (license license:expat))) + (define-public python-slixmpp (package (name "python-slixmpp") @@ -1577,10 +1964,36 @@ progress bar and a percentage indicator object that let you track the progress of a loop structure or other iterative computation.") (license license:bsd-3))) +(define-public python-gh-md-to-html + (package + (name "python-gh-md-to-html") + (version "1.21.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "gh_md_to_html" version)) + (sha256 + (base32 "1cnaqnckpcrpc4b8ba18s5ds05w1yfiszcp7ql7pmx0jnrj25qax")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #false)) ;there are none + (propagated-inputs + (list python-beautifulsoup4 + python-emoji + python-pillow + python-requests + python-shellescape + python-webcolors)) + (home-page "https://github.com/phseiff/github-flavored-markdown-to-html/") + (synopsis "Github-flavored Markdown") + (description + "This package provides a feature-rich Github-flavored Markdown to HTML +Python library and command line interface.") + (license license:expat))) + (define-public python-glymur (package (name "python-glymur") - (version "0.12.8") + (version "0.12.9") (source (origin (method git-fetch) ; no tests data in PyPi package @@ -1589,10 +2002,12 @@ of a loop structure or other iterative computation.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0mfyn9j7h13242d41vg12acw55yl2mv6lmgi265hfp11k7g52b6n")))) + (base32 "0awyav7071nn9z2g4mmpg33y0y0nfandfr6nr3j5vyb8hnprcmns")))) (build-system pyproject-build-system) (arguments (list + #:test-flags + #~(list "-n" "auto") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-library-locations @@ -1618,7 +2033,9 @@ of a loop structure or other iterative computation.") ;; which is patched above. (delete-file "tests/test_config.py")))))) (native-inputs - (list python-pytest python-scikit-image)) + (list python-pytest + python-pytest-xdist + python-scikit-image)) (inputs (list openjpeg ; glymur/lib/openjp2.py libtiff)) ; glymur/lib/tiff.py @@ -1928,13 +2345,13 @@ with Numpy and SciPy.") (define-public python-shapely (package (name "python-shapely") - (version "2.0.1") + (version "2.0.2") (source (origin (method url-fetch) (uri (pypi-uri "shapely" version)) (sha256 - (base32 "14v88k0y7qhp8n5clip6w96pkdzrfqa2hsjkhpy9gkifwyiv39k6")))) + (base32 "1rs90q4ys5cav0hz1dq72wq2mk4aqlqqbfjrnb2zzfkiq42cq4qp")))) (build-system pyproject-build-system) (arguments (list @@ -1945,8 +2362,7 @@ with Numpy and SciPy.") ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs - (list python-cython python-matplotlib python-pytest - python-pytest-cov)) + (list python-cython python-matplotlib python-pytest)) (inputs (list geos)) (propagated-inputs @@ -2221,13 +2637,13 @@ NetCDF files can also be read and modified. Python-HDF4 is a fork of (define-public python-h5netcdf (package (name "python-h5netcdf") - (version "1.1.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (pypi-uri "h5netcdf" version)) (sha256 - (base32 "0mmzfr6k55zqxxpb64gvdqisak8s1zb2r04yzkmp0wzd7dbknb4k")))) + (base32 "1kw3cf01kziwxmb84x0cy6vbpsmqjm0k1dm34i6b4d7bv8kw0wd1")))) (build-system pyproject-build-system) (native-inputs (list python-netcdf4 @@ -2250,25 +2666,21 @@ library.") (version "3.8.0") (source (origin - (method url-fetch) - (uri (pypi-uri "h5py" version)) - (sha256 - (base32 - "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))) + (method url-fetch) + (uri (pypi-uri "h5py" version)) + (sha256 + (base32 "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))) (build-system python-build-system) (arguments - `(#:tests? #f ; no test target - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-hdf5-paths - (lambda* (#:key inputs #:allow-other-keys) - (setenv "HDF5_DIR" (assoc-ref inputs "hdf5"))))))) - (propagated-inputs - (list python-six python-numpy)) - (inputs - (list hdf5-1.10)) - (native-inputs - (list python-cython python-pkgconfig pkg-config)) + '(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-hdf5-paths + (lambda* (#:key inputs #:allow-other-keys) + (setenv "HDF5_DIR" + (assoc-ref inputs "hdf5"))))))) + (propagated-inputs (list python-six python-numpy)) + (inputs (list hdf5-1.10)) + (native-inputs (list pkg-config python-cython python-ipython + python-pkgconfig python-pytest)) (home-page "https://www.h5py.org/") (synopsis "Read and write HDF5 files from Python") (description @@ -2279,6 +2691,30 @@ access to HDF5 files, datasets and groups using established Python and NumPy concepts.") (license license:bsd-3))) +(define-public python-hdf5storage + (package + (name "python-hdf5storage") + (version "0.1.19") + (source + (origin + (method url-fetch) + (uri (pypi-uri "hdf5storage" version)) + (sha256 + (base32 "11pgxsqap9l7jsf52649q9mpj8a0w6p9im929lpr9s26ynnnn6ks")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-h5py python-numpy)) + (native-inputs (list python-nose)) + (home-page "https://github.com/frejanordsiek/hdf5storage") + (synopsis "Read and write Python data types from and to HDF5 files") + (description + "This Python package provides high-level utilities to read and write a +variety of Python types from and to @acronym{HDF5, Hierarchical Data Format} +formatted files. This package also provides support for MATLAB MAT v7.3 +formatted files, which are HDF5 files with a different extension and some +extra metadata. Because HDF5 and MAT files might need to be read from +untrusted sources, pickling is avoided in this package.") + (license license:bsd-2))) + (define-public python-hjson ;; Using commit from master branch as the PyPI version does not contain ;; the hjson/tests/ directory. @@ -2364,6 +2800,7 @@ Unicode-to-LaTeX conversion.") (file-name (git-file-name name version)) (sha256 (base32 "0bkhfnlik89j3yamr20br4wm8975f20v33wabi2nyxvj10whr5dj")) + (patches (search-patches "python-pyls-black-41.patch")) ;; Patch to work with python-lsp-server. Taken from ;; <https://github.com/rupert/pyls-black/pull/37>. (modules '((guix build utils))) @@ -2379,9 +2816,11 @@ Unicode-to-LaTeX conversion.") "pylsp_format_range") (("from pyls([ \\.])" _ char) (string-append "from pylsp" char))))))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - `(#:test-target "pytest")) + (list + #:test-flags + '(list "-k" "not test_load_config_target_version"))) (propagated-inputs (list python-black python-lsp-server python-tomli)) (native-inputs @@ -2574,18 +3013,18 @@ conventions and aliases in the same expression.") (uri (pypi-uri "Wand" version)) (sha256 (base32 "1jpwm956vm35hmgjndr2jwrcql0bwvpsl88q5nr0x8ppxa2380gm")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'find-magickwand - (lambda* (#:key inputs #:allow-other-keys) - (setenv "MAGICK_HOME" (assoc-ref inputs "imagemagick")) - (setenv "WAND_MAGICK_LIBRARY_SUFFIX" ".Q16"))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest" "-vv"))))))) + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'hardcode-lib-path + (lambda _ + (substitute* "wand/api.py" + (("os\\.environ\\.get\\('MAGICK_HOME'\\)") + (string-append "\"" #$(this-package-input "imagemagick") "\"")) + (("os\\.environ\\.get\\('WAND_MAGICK_LIBRARY_SUFFIX'\\)") + "\".Q16\""))))))) (native-inputs (list python-pytest)) (inputs @@ -3741,6 +4180,46 @@ lossless but can be tweaked for more aggressive cleaning.") after Andy Lester’s Perl module WWW::Mechanize.") (license license:bsd-3))) +(define-public python-mediapy + (package + (name "python-mediapy") + (version "1.2.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/google/mediapy") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "14hmwib0dmy9h1w7allwsp0cgrfdv8f2sm9qlvy65yxai68v6vnl")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'fix-references + (lambda _ + (substitute* "mediapy_test.py" + (("'/bin/bash") + (string-append "'" (which "bash"))))))))) + (inputs (list ffmpeg-5)) + (propagated-inputs (list python-absl-py + python-ipython + python-matplotlib + python-numpy + python-pillow)) + (native-inputs + (list python-flit-core + python-pylint + python-pytest + python-pytest-xdist)) + (home-page "https://github.com/google/mediapy") + (synopsis "Read/write/show images and videos in an IPython notebook") + (description "This Python library makes it easy to display images and +videos in a notebook.") + (license license:asl2.0))) + (define-public python-simpleaudio (package (name "python-simpleaudio") @@ -4197,6 +4676,53 @@ a certain expected condition.") Cython for speed.") (license license:expat))) +(define-public python-daft + (package + (name "python-daft") + (version "0.1.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "daft" version)) + (sha256 + (base32 + "1r8jsfavd624q2q61f863lk6has6mv5csswh39saafd5khwf0xry")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + '(list "-k" + (string-append + ;; The following tests compare matplotlib output with + ;; previously generated images. They fail due to minor + ;; differences in where matplotlib places labels. + "not test_bca[png]" + " and not test_classic[png]" + " and not test_deconvolution[png]" + " and not test_exoplanets[png]" + " and not test_fixed[png]" + " and not test_gaia[png]" + " and not test_galex[png]" + " and not test_huey_p_newton[png]" + " and not test_logo[png]" + " and not test_no_circles[png]" + " and not test_no_gray[png]" + " and not test_recursive[png]" + " and not test_thick_lines[png]" + " and not test_weaklensing[png]" + " and not test_wordy[png]")))) + (propagated-inputs (list python-matplotlib python-numpy)) + (native-inputs (list python-pytest)) + (home-page "https://docs.daft-pgm.org/") + (synopsis "PGM rendering library") + (description "Daft is a Python package that uses matplotlib to +render pixel-perfect probabilistic graphical models for publication in +a journal or on the internet. With a short Python script and an +intuitive model-building syntax you can design directed (Bayesian +Networks, directed acyclic graphs) and undirected (Markov random fields) +models and save them in any formats that matplotlib supports (including +PDF, PNG, EPS and SVG).") + (license license:expat))) + (define-public python-portalocker (package (name "python-portalocker") @@ -4698,14 +5224,14 @@ interfaces.") (define-public python-click (package (name "python-click") - (version "8.1.3") + (version "8.1.7") (source (origin (method url-fetch) (uri (pypi-uri "click" version)) (sha256 (base32 - "13kvp8visj5xh9d43brnda6q0kc1s40flxa5cw0p0a9hzf5dr0kn")))) + "1pm6khdv88h764scik67jki98xbyj367h591j8hpwy4y8nnm766a")))) (build-system python-build-system) (arguments `(#:phases @@ -5313,14 +5839,14 @@ provides Python-specific tags that represent an arbitrary Python object.") (define-public python-vine (package (name "python-vine") - (version "5.0.0") + (version "5.1.0") (source (origin (method url-fetch) (uri (pypi-uri "vine" version)) (sha256 - (base32 "0zk3pm0g7s4qfn0gk28lfmsyplvisaxi6826cgpq5njkm4j1cfvx")))) - (build-system python-build-system) + (base32 "1q31krwxdvwawdn1kfqmpplix31d4jhs0qng26908hawsf0yjqlb")))) + (build-system pyproject-build-system) (native-inputs (list python-pytest python-case)) (home-page "https://github.com/celery/vine") @@ -5368,7 +5894,7 @@ e.g. filters, callbacks and errbacks can all be promises.") (build-system python-build-system) (arguments (list #:tests? #f)) ; tests not distributed on pypi - (home-page "https://github.com/benfogle/virtualenv") + (home-page "https://github.com/benfogle/crossenv") (synopsis "Cross-compiling virtualenv for Python") (description "This package is a tool for cross-compiling extension modules. It creates a special virtual environment such that @command{pip} or @@ -5584,6 +6110,54 @@ adds a 'now' tag providing a convenient access to the arrow.now() API from templates. A format string can be provided to control the output.") (license license:expat))) +(define-public python-pypugjs + (package + (name "python-pypugjs") + (version "5.9.12") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kakulukia/pypugjs") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0zj7a560h973cl7brfw1nmyhgm8rp8j80wnih0shvhmw4ql23lpa")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases #~(modify-phases %standard-phases + ;; Our pyramid is outdated and pyramid-mako is not packaged. + (add-after 'unpack 'disable-pyramid + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "setup.py" + (("'pyramid") + "#'pyramid")))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "pytest" "-v" + "pypugjs/testsuite/"))))))) + (native-inputs (list python-coverage + python-django + python-jinja2 + python-flake8 + python-flask + python-mako + python-nose + python-poetry-core + python-pytest + python-tornado-6 + python-wheel)) + (propagated-inputs (list python-charset-normalizer python-six)) + (home-page "https://github.com/kakulukia/pypugjs") + (synopsis "Convert Pug source files into different template languages") + (description + "PyPugJS is a high-performance port of PugJS for Python, that converts +any @file{.pug} source into different template languages: Django, Jinja2, +Mako, and Tornado.") + (license license:expat))) ;; MIT + (define-public python-pysdl2 (package (name "python-pysdl2") @@ -5699,26 +6273,20 @@ bookmarks using a declarative input in the form of a markdown file.") (define-public python-joblib (package (name "python-joblib") - (version "1.1.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (pypi-uri "joblib" version)) (sha256 (base32 - "0019p280s2k941mihl67l7y6amwx86639xp3zvpsg1lmyish67rh")))) - (build-system python-build-system) + "1cbjjzsh9hzaqr2cqja95673p7j88b8bd02hjpkq8xz147k6by4j")))) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (setenv "JOBLIB_MULTIPROCESSING" "0") - (invoke "pytest" "-v" "joblib" - ;; We disable this test to avoid having to depend on ipython/jupyter - "-k" "not test_parallel_call_cached_function_defined_in_jupyter"))))))) - (native-inputs - (list python-pytest)) + (list + #:test-flags ; disabled to avoid having to depend on ipython/jupyter + #~(list "-k" "not test_parallel_call_cached_function_defined_in_jupyter"))) + (native-inputs (list python-pytest)) + (propagated-inputs (list python-psutil)) (home-page "https://joblib.readthedocs.io/") (synopsis "Using Python functions as pipeline jobs") (description @@ -5782,6 +6350,30 @@ important tasks for becoming a daemon process: ;; Only setup.py is gpl3+, everything else is apache 2.0 licensed. (license (list license:asl2.0 license:gpl3+)))) +(define-public python-annotated-types + (package + (name "python-annotated-types") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "annotated_types" version)) + (sha256 + (base32 "0paaz0i4xqk335ji5w887i2bhgm2krnzr6by4sfgsgz50zl3jcsn")))) + (build-system pyproject-build-system) + (native-inputs + (list python-hatchling + python-pytest)) + (propagated-inputs (list python-typing-extensions)) + (home-page "https://github.com/annotated-types/annotated-types") + (synopsis "Reusable constraint types to use with typing.Annotated") + (description "This package provides metadata objects which can be used to +represent common constraints such as upper and lower bounds on scalar values and +collection sizes, a Predicate marker for runtime checks, and descriptions of how +we intend these metadata to be interpreted. In some cases, we also note +alternative representations which do not require this package.") + (license license:expat))) + (define-public python-anytree (package (name "python-anytree") @@ -5881,6 +6473,46 @@ accessible for novices, as well as a scripting interface offering the full flexibility and power of the Python language.") (license license:gpl3+))) +(define-public kalamine + (package + (name "kalamine") + (version "0.36") + (source + (origin + (method url-fetch) + (uri (pypi-uri "kalamine" version)) + (sha256 + (base32 "1xxncavq5a0dydhzpfjdxmqsddl77275d9k9giw1032bdyb9d5is")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'make-test-layouts + (lambda _ + (apply invoke + (cons* "python" "-m" "kalamine.cli" "build" + (find-files "layouts" "\\.toml"))) + (invoke "python" "-m" "kalamine.cli" "new" "test.toml")))))) + (propagated-inputs + (list python-click + python-livereload + python-lxml + python-progress + python-pyyaml + python-tomli)) + ;; TODO: Add python-pytest-ruff to native-inputs once it has been + ;; packaged. + (native-inputs + (list python-hatchling python-mypy python-pytest)) + (home-page "https://github.com/OneDeadKey/kalamine") + (synopsis "Keyboard layout maker") + (description + "Kalamine provides a CLI to create advanced keyboard layout from a +textual portable description. It also supports layout emulation via web +browser.") + (license license:expat))) + (define-public python-dm-tree (package (name "python-dm-tree") @@ -6940,6 +7572,101 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.") errors when data is invalid.") (license license:expat))) +(define-public python-pydantic-2 + (package + (inherit python-pydantic) + (name "python-pydantic") + (version "2.5.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pydantic" version)) + (sha256 + (base32 "0yiz75zp93x6x2czm772cz5pzn00i703irncjwb99c1m4p35gvxk")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags #~(list "--ignore=tests/test_docs.py" ; no pytest_examples + ;; need python-email-validator >= 2.0.0 + "-k not test_fastapi_startup_perf") + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'pre-check + (lambda _ + ;; Remove the addopts from pyproject.toml, it breaks the 'check phase. + (substitute* "pyproject.toml" + (("'--benchmark") "#'--benchmark"))))))) + (native-inputs + (list python-hatchling + python-hatch-fancy-pypi-readme + python-cloudpickle + python-dirty-equals + python-faker + python-pytest + python-pytest-benchmark + python-pytest-mock)) + (propagated-inputs + (list python-annotated-types + python-pydantic-core + python-typing-extensions)))) + +(define-public python-pydantic-core + (package + (name "python-pydantic-core") + (version "2.14.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pydantic_core" version)) + (sha256 + (base32 "0j79pd6ixapsiwsigsxzmvbrpmdr7f7c4l9sl7xl6a1pjp9w3l0z")))) + (build-system cargo-build-system) + (arguments + (list + #:imported-modules `(,@%cargo-build-system-modules + ,@%pyproject-build-system-modules) + #:modules '((guix build cargo-build-system) + ((guix build pyproject-build-system) #:prefix py:) + (guix build utils)) + #:phases + #~(modify-phases %standard-phases + (add-after 'prepare-python-module 'build-python-module + (assoc-ref py:%standard-phases 'build)) + (add-after 'build-python-module 'install-python-module + (assoc-ref py:%standard-phases 'install))) + #:cargo-inputs + `(("rust-ahash" ,rust-ahash-0.8) + ("rust-base64" ,rust-base64-0.21) + ("rust-enum-dispatch" ,rust-enum-dispatch-0.3) + ("rust-idna" ,rust-idna-0.4) + ("rust-jiter" ,rust-jiter-0.0.4) + ("rust-num-bigint" ,rust-num-bigint-0.4) + ("rust-python3-dll-a" ,rust-python3-dll-a-0.2) + ("rust-pyo3" ,rust-pyo3-0.20) + ("rust-pyo3-build-config" ,rust-pyo3-build-config-0.20) + ("rust-regex" ,rust-regex-1) + ("rust-strum" ,rust-strum-0.25) + ("rust-strum-macros" ,rust-strum-macros-0.25) + ("rust-serde" ,rust-serde-1) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-smallvec" ,rust-smallvec-1) + ("rust-speedate" ,rust-speedate-0.13) + ("rust-url" ,rust-url-2) + ("rust-uuid" ,rust-uuid-1) + ("rust-version-check" ,rust-version-check-0.9)) + #:cargo-development-inputs + `(("rust-pyo3" ,rust-pyo3-0.20)) + #:install-source? #false)) + (native-inputs + (list maturin python-wrapper)) + (propagated-inputs + (list python-typing-extensions)) + (home-page "https://github.com/pydantic/pydantic-core") + (synopsis "Core validation logic for pydantic") + (description "This package provides the core functionality for pydantic +validation and serialization.") + (license license:expat))) + (define-public python-pydantic-cli (package (name "python-pydantic-cli") @@ -6968,6 +7695,116 @@ errors when data is invalid.") Interfaces} via data models provided in the JSON format.") (license license:expat))) +(define-public python-pydantic-settings + (package + (name "python-pydantic-settings") + (version "2.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pydantic_settings" version)) + (sha256 + (base32 "1vf58f398ngk6wpf0jn51ghw65mjs3m03yn06h25jlsmx6jzdf80")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "-k" (string-append + ;; Disable tests requiring python-ruff. + "not test_docs_examples[docs/index.md:24-83]" + " and not test_docs_examples[docs/index.md:113-137]" + " and not test_docs_examples[docs/index.md:148-156]" + " and not test_docs_examples[docs/index.md:173-183]" + " and not test_docs_examples[docs/index.md:193-201]" + " and not test_docs_examples[docs/index.md:212-243]" + " and not test_docs_examples[docs/index.md:286-317]" + " and not test_docs_examples[docs/index.md:331-372]" + " and not test_docs_examples[docs/index.md:430-439]" + " and not test_docs_examples[docs/index.md:453-459]" + " and not test_docs_examples[docs/index.md:514-522]" + " and not test_docs_examples[docs/index.md:547-549]" + " and not test_docs_examples[docs/index.md:553-585]" + " and not test_docs_examples[docs/index.md:620-645]" + " and not test_docs_examples[docs/index.md:654-732]" + " and not test_docs_examples[docs/index.md:738-772]")) + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "pyproject.toml" + ;; hatchling.build failed on this line with error: + ;; ValueError: Unknown classifier in field + ;; `project.classifiers`: Framework :: Pydantic :: 2 + (("'Framework :: Pydantic :: 2',") "") + ;; python-dotenv>=0.21.0 + ((">=0.21.0") ">=0.20.0")))) + (add-before 'check 'set-home + (lambda _ + ;; FileNotFoundError: [Errno 2] No such file or directory: + ;; '/homeless-shelter/ + (setenv "HOME" "/tmp")))))) + (propagated-inputs + (list python-dotenv + python-pydantic-2 + python-pyaml + python-tomli)) + (native-inputs + (list python-hatchling + python-pytest + python-pytest-examples + python-pytest-mock)) + (home-page "https://docs.pydantic.dev/latest/usage/pydantic_settings/") + (synopsis "Settings management using Pydantic") + (description + "Pydantic Settings provides optional Pydantic features for loading a +settings or config class from environment variables or secrets files.") + (license license:expat))) + +(define-public python-pydoc-markdown + (package + (name "python-pydoc-markdown") + (version "4.8.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pydoc_markdown" version)) + (sha256 + (base32 "02vzlrd18r8wi0b64vq2gnbhaadysg9rnbylf9sf2v9q65z94v7v")))) + (build-system pyproject-build-system) + (arguments + (list + #:tests? #false ;there are none + #:phases + '(modify-phases %standard-phases + ;; This is probably not a good idea, but it wants a rather old + ;; version of docstring-parser. + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "pyproject.toml" + (("docstring-parser = .*") + "docstring-parser = \"^0\"\n"))))))) + (propagated-inputs (list python-click + python-databind-core + python-databind-json + python-docspec + python-docspec-python + python-docstring-parser + python-jinja2 + python-nr-util + python-pyyaml + python-requests + python-tomli + python-tomli-w + python-watchdog + python-yapf)) + (native-inputs (list python-poetry-core)) + (home-page "https://pypi.org/project/pydoc-markdown/") + (synopsis "Create Python API documentation in Markdown format") + (description "Pydoc-Markdown is a tool to create Python API documentation +in Markdown format. Instead of executing your Python code like so many other +documentation tools, it parses it using docspec instead.") + (license license:expat))) + (define-public python-pydocstyle (package (name "python-pydocstyle") @@ -7251,6 +8088,20 @@ programming language and the extended Cython programming language. It makes writing C extensions for Python as easy as Python itself.") (license license:asl2.0))) +;; Needed for scipy +(define-public python-cython-0.29.35 + (package + (inherit python-cython) + (name "python-cython") + (version "0.29.35") + (source (origin + (method url-fetch) + (uri (pypi-uri "Cython" version)) + (sha256 + (base32 + "09y5r22nyswqpwc02agla1bnzh2jx2db25pnq9pc5cq8pyh1yf3f")))) + (properties '()))) + (define-public python-cython-3 (package (inherit python-cython) @@ -7623,7 +8474,7 @@ color scales, and color space conversion easy. It has support for: (native-inputs (list python-pytest python-pytest-mock)) (propagated-inputs - (list python-cryptography python-gssapi python-ruamel.yaml)) + (list python-cryptography python-gssapi python-krb5 python-ruamel.yaml)) (home-page "https://github.com/jborean93/pyspnego") (synopsis "Python SPNEGO library") (description "The @code{pyspnego} Python library handles Negotiate, NTLM, @@ -8072,16 +8923,25 @@ comparison. (define-public python-matplotlib (package (name "python-matplotlib") - (version "3.5.2") + (version "3.8.2") (source (origin (method url-fetch) (uri (pypi-uri "matplotlib" version)) (sha256 - (base32 "18h78s5ld1i6mz00w258hy29909nfr3ddq6ry9kq18agw468bks8")))) - (build-system python-build-system) + (base32 "18amhxyxa6yzy1nwky4ggdgvvxnbl3qz2lki05vfx0dqf6w7ia81")))) + (build-system pyproject-build-system) (arguments (list + #:test-flags + '(list "-m" "not network" + "-k" + (string-append + ;; This one fails with a small difference in the upper left. + "not test_figure_legend_outside" + ;; The 'test_lazy_auto_backend_selection' fails + ;; because it would require an X server; skip it. + " and not test_lazy_auto_backend_selection")) #:phases #~(modify-phases %standard-phases (add-before 'build 'pretend-version @@ -8145,49 +9005,30 @@ backend=Agg basedirlist = ~a,~a [packages] -tests = True~%" (assoc-ref inputs "tcl") (assoc-ref inputs "tk")))))) +tests = True~%" #$(this-package-input "tcl") #$(this-package-input "tk")))))) (replace 'check - (lambda* (#:key tests? #:allow-other-keys) + (lambda* (#:key tests? test-flags #:allow-other-keys) (when tests? ;; Step out of the source directory to avoid interference. (with-directory-excursion "/tmp" ;; Run the installed tests, which is what we want since not ;; everything gets built in the source directory. - (invoke "pytest" - "-n" (number->string (parallel-job-count)) - "-m" "not network" "--pyargs" "matplotlib" - "-k" - (string-append - ;; The 'test_lazy_auto_backend_selection' fails - ;; because it would require an X server; skip it. - "not test_lazy_auto_backend_selection" - ;; test_getattr fails for the GTK backend because - ;; of an unexpected warning from Python 3.10 - ;; (via the gi module): - ;; https://gitlab.gnome.org/GNOME/pygobject/-/issues/494 - " and not test_getattr"))))))))) - (propagated-inputs - (list gobject-introspection - python-cairocffi - python-certifi + (apply invoke "pytest" + "-n" (number->string (parallel-job-count)) + "--pyargs" "matplotlib" + test-flags)))))))) + (propagated-inputs + (list python-contourpy python-cycler python-dateutil python-fonttools-minimal + python-importlib-resources python-kiwisolver python-numpy python-packaging python-pillow - ;; ;; 'pycairo'. However, 'pygobject' makes use of a 'pycairo' 'context' - ;; ;; From version 1.4.0 'matplotlib' makes use of 'cairocffi' instead of - ;; ;; https://cairocffi.readthedocs.io/en/stable/cffi_api.html#converting-pycairo-wrappers-to-cairocffi - ;; ;; object. For this reason we need to import both libraries. - ;; python-pycairo - python-pygobject python-pyparsing - python-pytz - python-six - `(,python "tk") - python-wxpython)) + `(,python "tk"))) (inputs (list cairo freetype @@ -8198,6 +9039,7 @@ tests = True~%" (assoc-ref inputs "tcl") (assoc-ref inputs "tk")))))) tk)) (native-inputs (list pkg-config + pybind11 python-pytest python-pytest-timeout python-pytest-xdist @@ -8351,7 +9193,9 @@ three-way Venn diagrams in @code{matplotlib}.") (list #:test-flags ;; This test fails with ValueError: not enough values to unpack. - #~(list "--deselect" "tests/test_spy.py::test_cli"))) + #~(list "--deselect" "tests/test_spy.py::test_cli" + ;; XXX: unknown failure + "--deselect" "tests/test_spy.py::test_png"))) (home-page "https://github.com/nschloe/matplotx") (synopsis "Minimal matplotlib styles") (description @@ -8384,6 +9228,48 @@ clean plots with a minimalistic style.") complex-valued functions.") (license license:gpl3+))) +(define-public python-cppheaderparser + (package + (name "python-cppheaderparser") + (version "2.7.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "CppHeaderParser" version)) + (sha256 + (base32 "0hncwd9y5ayk8wa6bqhp551mcamcvh84h89ba3labc4mdm0k0arq")))) + (build-system pyproject-build-system) + (arguments + (list + #:tests? #f)) ; no tests + (propagated-inputs (list python-ply)) + (home-page "http://senexcanis.com/open-source/cppheaderparser/") + (synopsis + "Parse C++ header files and generate a data structure representing the class") + (description + "CppHeaderParser is a pure python module that will parse C++ header files +and generate a data structure representing the class.") + (license license:bsd-3))) + +(define-public python-cppy + (package + (name "python-cppy") + (version "1.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cppy" version)) + (sha256 + (base32 "06zysv86j7wqb1rl88ab4clbjf7iahhv9gfyqlasr18hggqkpd43")))) + (build-system pyproject-build-system) + (home-page "https://github.com/nucleic/cppy") + (synopsis "C++ header library for Python extension modules") + (description "This package is a small C++ header library which makes it +easier to write Python extension modules. The primary feature is a +@code{PyObject} smart pointer which automatically handles reference counting +and provides convenience methods for performing common object operations.") + (license license:bsd-3))) + (define-public python-perfplot (package (name "python-perfplot") @@ -8854,6 +9740,39 @@ also add custom data, viewing options, and passwords to PDF files. It can retrieve text and metadata from PDFs as well as merge entire files together.") (license license:bsd-3))) +(define-public python-pdf2image + (package + (name "python-pdf2image") + (version "1.17.0") + ;; No tests in the PyPI tarball. + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Belval/pdf2image") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0xd8q939zqa8flfcdhbgyadiwqb8sgnd42cbr6n1l2jl9fnix45v")))) + (build-system pyproject-build-system) + (arguments + ;; The following excluded tests assume hardcoded binary paths to + ;; /usr/bin/pdftoppm and /usr/bin/pdftocairo. + '(#:test-flags '("--exclude=^test_use_poppler_path$" + "--exclude=^test_use_poppler_path_with_trailing_slash$"))) + (propagated-inputs (list python-pillow)) + (inputs (list poppler)) + (native-inputs (list python-nose which)) + (home-page "https://github.com/Belval/pdf2image") + (synopsis + "Python wrapper around @command{pdftoppm} and @command{pdftocairo}") + (description + "This package provides a Python API wrapping the @command{pdftoppm} and +@command{pdftocairo} command line tools. It can convert @file{PDF} files to a +Python list with elements of type @code{PIL.Image} (from the +@code{python-pillow} library).") + (license license:expat))) + (define-public python-pikepdf (package (name "python-pikepdf") @@ -9184,19 +10103,21 @@ regions of interest, geometric shapes, paths, text, etc for image overlays.") (define-public python-tifffile (package (name "python-tifffile") - (version "2021.4.8") + (version "2023.12.9") (source (origin (method url-fetch) (uri (pypi-uri "tifffile" version)) (sha256 (base32 - "16r0hw7shka1bqf28bv198lj2jhf2r9gy3s5zv4nf5cfsfm8pajm")))) + "1f6d8qdlq0zlksfdhp1mhj9icpwhw4cz47r4i80m6r0a328xmlcx")))) (build-system python-build-system) ;; Tests require lfdfiles, which depends on tifffile (arguments `(#:tests? #f)) (propagated-inputs - (list python-numpy python-imagecodecs)) + (list python-numpy)) + (native-inputs + (list python-pytest)) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Read and write TIFF(r) files") (description "This package lets you read image and metadata from many @@ -9414,14 +10335,14 @@ from FFMPEG, reliably terminating the process when done.") (define-public python-imageio (package (name "python-imageio") - (version "2.26.0") + (version "2.33.1") (source (origin (method url-fetch) (uri (pypi-uri "imageio" version)) (sha256 (base32 - "0dgddhi5dlpry5j4d3256v09pcziyj3ii47yx0zi68xprm11d7qn")))) + "1kn1gj9vc1mkirs39x3nkw2d56paiagi24kkxksrig9pn502swkq")))) (build-system pyproject-build-system) (arguments (list @@ -9448,9 +10369,10 @@ from FFMPEG, reliably terminating the process when done.") (delete-file "tests/test_freeimage.py")))))) (inputs (list freeimage)) (propagated-inputs - (list python-imageio-ffmpeg python-numpy python-pillow python-psutil)) + (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile)) (native-inputs - (list python-pytest)) + (list python-black python-flake8 python-fsspec python-pytest + python-pytest-cov)) (home-page "https://imageio.github.io/") (synopsis "Library for reading and writing a wide range of image data") (description @@ -9712,6 +10634,43 @@ service. It allows you to invoke commands on target Windows machines from any machine that can run Python.") (license license:expat))) +(define-public python-manimpango + (package + (name "python-manimpango") + (version "0.5.0") + (source + (origin + (method git-fetch) ; no tests data in PyPi package + (uri (git-reference + (url "https://github.com/ManimCommunity/ManimPango") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "00mrvswk8yly0m13jq0f432pr19sy3j6w37lrv78ah1j6jz9n50h")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'build-extensions + (lambda _ + (invoke "python" "setup.py" "build_ext" "--inplace")))))) + (native-inputs + (list pkg-config + python-cython + python-pytest + python-pytest-cov)) + (inputs + (list pango)) + (home-page "https://manimpango.manim.community/") + (synopsis "Bindings for Pango for using with Manim") + (description + "Python bindings for ManimPango which is a C binding for Pango, +using Cython. + +ManimPango is internally used in Manim to render (non-LaTeX) text.") + (license license:expat))) + (define-public python-xcffib (package (name "python-xcffib") @@ -10374,6 +11333,67 @@ finding unresolved symbols in Python code and their corresponding imports.") class constructs.") (license license:expat))) +(define-public python-jaraco-collections + (package + (name "python-jaraco-collections") + (version "5.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jaraco.collections" version)) + (sha256 + (base32 "0s7y3jr7c173k38pck1b17kxnvx2fl0qh9m9gdf64pr9kz8fi00n")))) + (build-system pyproject-build-system) + ;; Do not test pyproject.toml with python-pytest-checkdocs as it tries to + ;; download dependencies. + (arguments + '(#:test-flags '("-k" "not project"))) + (propagated-inputs (list python-jaraco-text)) + ;; TODO: Add python-pytest-ruff to native-inputs once it has been + ;; packaged. + (native-inputs (list python-pytest + python-pytest-black + python-pytest-checkdocs + python-pytest-cov + python-pytest-enabler + python-pytest-mypy)) + (home-page "https://github.com/jaraco/jaraco.collections") + (synopsis "Provides various collection objects") + (description + "This package provides models and classes to supplement the +standard library @code{collections} module. Examples include +@itemize +@item +RangeMap: A mapping that accepts a range of values for keys. +@item +Projection: A subset over an existing mapping. +@item +KeyTransformingDict: Generalized mapping with keys transformed by a function. +@item +FoldedCaseKeyedDict: A dict whose string keys are case-insensitive. +@item +BijectiveMap: A map where keys map to values and values back to their keys. +@item +ItemsAsAttributes: A mapping mix-in exposing items as attributes. +@item +IdentityOverrideMap: A map whose keys map by default to themselves unless overridden. +@item +FrozenDict: A hashable, immutable map. +@item +Enumeration: An object whose keys are enumerated. +@item +Everything: A container that contains all things. +@item +Least, Greatest: Objects that are always less than or greater than any other. +@item +pop_all: Return all items from the mutable sequence and remove them from that sequence. +@item +DictStack: A stack of dicts, great for sharing scopes. +@item +WeightedLookup: A specialized RangeMap for selecting an item by weights. +@end itemize") + (license license:expat))) + ;;; Variant used to break a cycle with python-pytest-enabler. (define-public python-jaraco-context-bootstrap (hidden-package @@ -10538,6 +11558,62 @@ releases.") (description "This package provides testing support by jaraco.") (license license:expat))) +(define-public python-jaraco-text + (package + (name "python-jaraco-text") + (version "3.12.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jaraco.text" version)) + (sha256 + (base32 "0b2rmx0sa61f75lkkr4nfaj3mkgmn3x9c1akpwarfbmksk42b7iq")))) + (build-system pyproject-build-system) + ;; Do not test pyproject.toml with python-pytest-checkdocs as it tries to + ;; download dependencies. + (arguments + '(#:test-flags '("-k" "not project"))) + (propagated-inputs (list python-autocommand python-inflect + python-jaraco-context python-jaraco-functools + python-more-itertools)) + ;; TODO: Add python-pytest-ruff to native-inputs once it has been + ;; packaged. + (native-inputs (list python-pytest + python-pytest-black + python-pytest-checkdocs + python-pytest-cov + python-pytest-enabler + python-pytest-mypy)) + (home-page "https://github.com/jaraco/jaraco.text") + (synopsis "Provides various routines for text manipulation") + (description + "This package provides handy routines for dealing with text, +such as wrapping, substitution, trimming, stripping, prefix and suffix +removal, line continuation, indentation, comment processing, identifier +processing, values parsing, case insensitive comparison, and more.") + (license license:expat))) + +(define-public python-pypytools + (package + (name "python-pypytools") + (version "0.6.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pypytools" version)) + (sha256 + (base32 "0ag5xyzagprji0m2pkqsfy8539s003mn41pl6plbmh6iwi9w0h51")))) + (build-system python-build-system) + (arguments (list #:tests? #f)) ; no tests + (propagated-inputs (list python-py)) + (home-page "https://github.com/antocuni/pypytools/") + (synopsis + "Tools to use PyPy-specific features, with CPython fallbacks") + (description + "This package provides a collection of useful tools to use PyPy-specific +features, with CPython fallbacks.") + (license license:x11))) + (define-public python-simplegeneric (package (name "python-simplegeneric") @@ -11408,6 +12484,24 @@ features useful for text console applications.") supports @code{readline} shortcuts.") (license license:expat))) +(define-public python-urwidgets + (package + (name "python-urwidgets") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "urwidgets" version)) + (sha256 + (base32 "123n9qfg6qwwh1911y71c3msxi89n8cjj15wh2snqmwdkyfwy6nl")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-urwid)) + (home-page "https://github.com/AnonymouX47/urwidgets") + (synopsis "Collection of widgets for urwid") + (description + "This package provides a collection of widgets for urwid.") + (license license:expat))) + (define-public python-textdistance (package (name "python-textdistance") @@ -11905,19 +12999,18 @@ approach.") (build-system python-build-system) (arguments ;; TODO: Package missing test dependencies. - '(#:tests? #f - #:phases - (modify-phases %standard-phases - ;; For cluster execution Snakemake will call Python. Since there is - ;; no suitable PYTHONPATH set, cluster execution will fail. We fix - ;; this by calling the snakemake wrapper instead. - (add-after 'unpack 'call-wrapper-not-wrapped-snakemake - (lambda* (#:key outputs #:allow-other-keys) - (substitute* "snakemake/executors/__init__.py" - (("\\{sys.executable\\} -m snakemake") - (string-append (assoc-ref outputs "out") - "/bin/snakemake"))) - #t))))) + (list + #:tests? #f + #:phases + #~(modify-phases %standard-phases + ;; For cluster execution Snakemake will call Python. Since there is + ;; no suitable PYTHONPATH set, cluster execution will fail. We fix + ;; this by calling the snakemake wrapper instead. + (add-after 'unpack 'call-wrapper-not-wrapped-snakemake + (lambda _ + (substitute* "snakemake/executors/__init__.py" + (("\\{sys.executable\\} -m snakemake") + (string-append #$output "/bin/snakemake")))))))) (propagated-inputs (list python-appdirs python-configargparse @@ -12048,7 +13141,22 @@ Python style, together with a fast and comfortable execution environment.") "") (("\"-m snakemake\"") (string-append "\"" #$output - "/bin/snakemake" "\""))))) + "/bin/snakemake" "\"")) + ;; The snakemake command produced by format_job_exec contains + ;; references to /gnu/store. Prior to patching above that's + ;; just a reference to Python; after patching it's a reference + ;; to the snakemake executable. + ;; + ;; In Tibanna execution mode Snakemake arranges for a certain + ;; Docker image to be deployed to AWS. It then passes its own + ;; command line to Tibanna. This is misguided because it only + ;; ever works if the local Snakemake command was run inside + ;; the same Docker image. In the case of using Guix this is + ;; never correct, so we need to replace the store reference. + (("tibanna_args.command = command") + (string-append + "tibanna_args.command = command.replace('" + #$output "/bin/snakemake', 'python3 -m snakemake')"))))) (add-after 'unpack 'patch-version (lambda _ (substitute* "setup.py" @@ -12123,17 +13231,32 @@ SVG, EPS, PNG and terminal output.") (define-public python-seaborn (package (name "python-seaborn") - (version "0.12.0") + (version "0.13.1") (source (origin (method url-fetch) (uri (pypi-uri "seaborn" version)) (sha256 (base32 - "08vvnp4ps86857imxz2l5xi2vir5xdcdp3apq4badb4b5llifgw9")))) + "0ycibcs6kvd3xi4zsxna81claqifyb9dn6z6jwc5x7lqqplnbbdz")))) (build-system pyproject-build-system) - (propagated-inputs (list python-pandas python-matplotlib python-numpy - python-scipy)) - (native-inputs (list python-flit-core python-pypa-build python-pytest)) + (propagated-inputs + (list python-ipykernel + python-matplotlib + python-mypy + python-nbconvert + python-numpy + python-numpydoc + python-pandas + python-pyyaml + python-scipy + python-statsmodels)) + (native-inputs + (list python-flake8 + python-flit-core + python-pre-commit + python-pytest + python-pytest-cov + python-pytest-xdist)) (home-page "https://seaborn.pydata.org/") (synopsis "Statistical data visualization") (description @@ -12579,18 +13702,16 @@ applications.") (define-public python-immutabledict (package (name "python-immutabledict") - (version "2.2.1") + (version "4.2.0") (source (origin (method url-fetch) (uri (pypi-uri "immutabledict" version)) (sha256 - (base32 "0fpc4gbk7inpfbgdypsg6c18bmdjw8gwx47bjw0hvixn3gghxnqx")))) - (build-system python-build-system) - (arguments - `(#:tests? #f)) ; no tests in PyPI release and no setup.py in GitHub + (base32 "0pvwfasa5l78pi32zk55x5ihpdzkdh4f3xwbfmd7ldyjma0zs0z0")))) + (build-system pyproject-build-system) (native-inputs - (list python-pytest)) + (list python-poetry-core python-pytest)) (home-page "https://github.com/corenting/immutabledict") (synopsis "Immutable wrapper around dictionaries") (description @@ -12865,10 +13986,44 @@ validate this input and generate a PEP 643-compliant metadata file (e.g. @file{PKG-INFO}).") (license license:expat))) +(define-public python-pyproject-metadata-0.7 + (package + (inherit python-pyproject-metadata) + (name "python-pyproject-metadata") + (version "0.7.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/FFY00/python-pyproject-metadata") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0yvs59ymz5gdix34a95wxlxvk9bnvjgrzsnmnc3ws7whpfv3yasm")))))) + ;; pep621 was renamed to pyproject-metadata. (define-public python-pep621 (deprecated-package "python-pep621" python-pyproject-metadata)) +(define-public python-meson-python + (package + (name "python-meson-python") + (version "0.15.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "meson_python" version)) + (sha256 + (base32 "0vyjhjabvm41hqijifk33idbdl62i76kfyf884f9rs29rpp77nzx")))) + (build-system meson-build-system) + (propagated-inputs (list python-pyproject-metadata python-tomli)) + (home-page "https://github.com/mesonbuild/meson-python") + (synopsis "Meson Python build backend (PEP 517)") + (description "This package provides a PEP 517 build backend that makes +use of the Meson build system.") + (license license:expat))) + (define-public python-pyflakes (package (name "python-pyflakes") @@ -13320,6 +14475,41 @@ extensions, and several HTML output formats. A command line wrapper markdown_py is also provided to convert Markdown files to HTML.") (license license:bsd-3))) +(define-public python-markdown2 + (package + (name "python-markdown2") + (version "2.4.13") + (source + (origin + (method git-fetch) ; no tests data in PyPi package + (uri (git-reference + (url "https://github.com/trentm/python-markdown2") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0m1wy8i4xmna5b97dvks8cfjmc1wid8pxmd2h82869d0ajva3r6a")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? test-flags #:allow-other-keys) + (when tests? + (with-directory-excursion "test" + (invoke "python" "testall.py")))))))) + (native-inputs + (list python-pygments)) + (home-page "https://github.com/trentm/python-markdown2") + (synopsis "Fast and complete Python implementation of Markdown") + (description + "This package provides a fast and complete Python implementation of +Markdown. It was written to closely match the behaviour of the original +Perl-implemented Markdown.pl. It also comes with a number of +extensions (called @code{extras}) for things like syntax coloring, tables, +header-ids.") + (license license:expat))) + (define-public python-mdx-include (package (name "python-mdx-include") @@ -13560,6 +14750,24 @@ almost any existing Python modules, and an easy way for outside developers to add functionality and customization to your projects with their own plugins.") (license license:expat))) +(define-public python-strenum + (package + (name "python-strenum") + (version "0.4.15") + (source + (origin + (method url-fetch) + (uri (pypi-uri "StrEnum" version)) + (sha256 + (base32 "1zrfr1shin5wyfnfxc7jpk013594wasrp4ni9l70fhjlf2mvb3w7")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #false)) ;there are none. + (home-page "https://github.com/irgeek/StrEnum") + (synopsis "Enum that inherits from str") + (description "StrEnum is a Python @code{enum.Enum} that inherits from +@code{str} to complement @code{enum.IntEnum} in the standard library.") + (license license:expat))) + (define-public python-pysendfile (package (name "python-pysendfile") @@ -14329,6 +15537,27 @@ tasks, sockets, files, locks, and queues.") designed to efficiently cope with extremely large amounts of data.") (license license:bsd-3))) +(define-public python-tasklogger + (package + (name "python-tasklogger") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tasklogger" version)) + (sha256 + (base32 "1901mibcp6aiyjy8afnybrxnb0dkbdxlbvjqbr3gginlw7dr18xh")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-deprecated)) + (native-inputs (list python-coverage python-coveralls python-nose2 + python-numpy)) + (home-page "https://github.com/scottgigante/tasklogger") + (synopsis "Extension to the core Python logging library") + (description "This package provides an extension to the core Python +logging library for logging the beginning and completion of tasks and +subtasks.") + (license license:gpl2))) + (define-public python-sniffio (package (name "python-sniffio") @@ -16326,16 +17555,18 @@ consistent API regardless of how the configuration was created.") (define-public python-configargparse (package (name "python-configargparse") - (version "1.5.3") + (version "1.7") (source (origin (method url-fetch) (uri (pypi-uri "ConfigArgParse" version)) (sha256 (base32 - "17vky4ihicbf7nggg30xs7h3g5rxzwgch8vilnnrvdaacszkq2qv")))) + "1l866g1dcf2ljf8fl7ggpxk1rggry0lya4d5b264gradi1qp81p7")))) (build-system pyproject-build-system) (native-inputs (list python-mock python-pytest)) + (propagated-inputs + (list python-pyyaml)) (synopsis "Replacement for argparse") (description "A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.") @@ -16399,6 +17630,29 @@ managers. It also contains additional features that are not part of the standard library.") (license license:psfl))) +(define-public python-contexttimer + (package + (name "python-contexttimer") + (version "0.3.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/brouberol/contexttimer") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "00a9h06a1wj66935n863qlk4jpl9gvdvzkkhl8xmgqwdkwv0js54")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-decorator python-unittest2)) + (native-inputs (list python-mock)) + (home-page "https://github.com/brouberol/contexttimer") + (synopsis "Timer as a context manager") + (description + "This package offers utilities to measure code block or function +execution time.") + (license license:gpl3))) + (define-public python-texttable (package (name "python-texttable") @@ -16521,18 +17775,19 @@ applications.") (define-public python-click-default-group (package (name "python-click-default-group") - (version "1.2.2") + (version "1.2.4") (source (origin (method url-fetch) - (uri (pypi-uri "click-default-group" version)) + (uri (pypi-uri "click_default_group" version)) (sha256 (base32 - "015r78jk8gznfw0dphpwaqcx5mhg5822b55w5xbb6i7sin70wmnr")))) - (build-system python-build-system) - (arguments - `(#:tests? #f)) ; no target + "07i5w47lbihcb3cvs08vynz725z9skvhhzrarnk6qi8dxjckqgzb")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-click)) + (native-inputs + (list python-flit-core python-pytest)) (synopsis "Extends click.Group") (description "This package extends click.Group to invoke a command without explicit subcommand name.") @@ -17097,17 +18352,17 @@ that deprecated code is eventually removed.") (define-public python-jmespath (package (name "python-jmespath") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (pypi-uri "jmespath" version)) (sha256 (base32 - "0pmzfi230zfgiq2rz896kbb9f7mp0lnrjdl6x1npvxfixn0f5454")))) + "1gpdc1f0q5c9scmbw1l9g40jjfk3pxwg91ayvn7xbvvddlh1n9lh")))) (build-system python-build-system) (native-inputs - (list python-nose)) + (list python-pytest)) (synopsis "JSON Matching Expressions") (description "JMESPath (pronounced “james path”) is a Python library that allows one to declaratively specify how to extract elements from a JSON @@ -17118,13 +18373,13 @@ document.") (define-public python-symengine (package (name "python-symengine") - (version "0.10.0") + (version "0.11.0") (source (origin (method url-fetch) (uri (pypi-uri "symengine" version)) (sha256 - (base32 "0i97lb6h8jk0k98805mkw6id5r537469zbh2d95320azq9nfj824")))) + (base32 "0n54rdpmz3bmxrbjqflmlrgc27rvik1jkv6x3cjvgsq4p0lhvlqd")))) (build-system python-build-system) (arguments (list @@ -17138,7 +18393,7 @@ document.") (invoke "nosetests" "-v" "symengine.tests")) (format #t "test suite not run~%"))))))) (native-inputs - (list cmake python-cython python-nose)) + (list cmake python-cython-3 python-nose)) (inputs (list symengine)) (home-page "https://github.com/symengine/symengine.py") @@ -17811,30 +19066,27 @@ applications.") (define-public python-kombu (package (name "python-kombu") - (version "5.2.4") + (version "5.3.6") (source (origin (method url-fetch) (uri (pypi-uri "kombu" version)) (sha256 - (base32 "044ng79gj04668kf5fmy7fjkw8302xyapskkn65ym52zfbpf7kip")))) - (build-system python-build-system) + (base32 "1n9i4hj1h3aivgy82l7accyjh1rqn20am00152l5syhl19bmpnpk")))) + (build-system pyproject-build-system) (arguments - (list - #:phases - #~(modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest" "-vv" - ;; The transport tests attempt to pass messages to - ;; many different databases. - "--ignore" "t/unit/transport"))))))) + (list #:test-flags + ;; TODO: Package azure-identity (required for this file) + #~(list "--ignore" "t/unit/transport/test_azurestoragequeues.py"))) (native-inputs - (list python-case python-pyro4 python-pytest-sugar - python-pytest python-pytz)) + (list python-botocore + python-case + python-pyro4 + python-pytest + python-pytest-sugar + python-tzdata)) (propagated-inputs - (list python-amqp python-cached-property python-vine)) + (list python-amqp python-typing-extensions python-vine)) (home-page "https://kombu.readthedocs.io") (synopsis "Message passing library for Python") (description "The aim of Kombu is to make messaging in Python as easy as @@ -17848,25 +19100,21 @@ RabbitMQ messaging server is the most popular implementation.") (define-public python-billiard (package (name "python-billiard") - (version "3.6.4.0") + (version "4.2.0") (source (origin (method url-fetch) (uri (pypi-uri "billiard" version)) (sha256 - (base32 "0ismj2p8c66ykpss94rs0bfra5agxxmljz8r3gaq79r8valfb799")))) - (build-system python-build-system) + (base32 "0b2svqx81511m0k2swjkybcx69f541dzd4rgfdxa2ni7rf232g4s")))) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'remove-win-files - (lambda _ - (for-each delete-file-recursively - ;; test_multiprocessing seem to be written in Python2. - '("t/integration/tests/test_multiprocessing.py" - "t/unit/test_win32.py" - "billiard/popen_spawn_win32.py" - "billiard/_win.py"))))))) + (list #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'remove-win-files + (lambda _ + (for-each delete-file-recursively + '("billiard/popen_spawn_win32.py" + "billiard/_win.py"))))))) (native-inputs (list python-case python-psutil python-pytest)) (home-page "https://github.com/celery/billiard") @@ -17881,34 +19129,30 @@ Python 2.4 and 2.5, and will draw its fixes/improvements from python-trunk.") (define-public python-celery (package (name "python-celery") - (version "5.2.6") + (version "5.3.6") (source (origin (method url-fetch) (uri (pypi-uri "celery" version)) (sha256 - (base32 "109lcqarrbmh95sk1dm4yxayq1h3i27f4w23ndk64mqgyfnqqffi")))) - (build-system python-build-system) + (base32 "1fdacw13ij94s59l6lspl09iv6fc8h1p6399jz1h00kwfcfwf347")))) + (build-system pyproject-build-system) (arguments - '(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "requirements/default.txt" - (("pytz.*") - "pytz\n")))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "python" "-m" "pytest" "t" - "--ignore" "t/integration" ;hangs tests - ;; The MongoDB backend test appears to expect an older - ;; version of MongoDB which provided its own bson - ;; module, fails with " AttributeError: module 'bson' - ;; has no attribute 'encode'". - "--ignore" "t/unit/backends/test_mongodb.py" - ;; AssertionErrors - "-k" "not test_check_privileges_no_fchown "))))))) + (list + ;; The MongoDB backend test appears to expect an older + ;; version of MongoDB which provided its own bson + ;; module, fails with " AttributeError: module 'bson' + ;; has no attribute 'encode'". + #:test-flags #~(list "--ignore" "t/unit/backends/test_mongodb.py" + ;; AssertionError. + "-k" "not test_check_privileges_no_fchown") + #:phases #~(modify-phases %standard-phases + ;; Celery requires tzdata >= 2022.7, we have 2022.1. + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "requirements/default.txt" + (("tzdata.*") + "tzdata\n"))))))) (native-inputs (list python-case python-dnspython @@ -17918,6 +19162,7 @@ Python 2.4 and 2.5, and will draw its fixes/improvements from python-trunk.") python-msgpack python-pytest ;for pytest-subtests python-pytest-celery + python-pytest-click python-pytest-subtests python-pytest-timeout python-toml)) @@ -17928,7 +19173,7 @@ Python 2.4 and 2.5, and will draw its fixes/improvements from python-trunk.") python-click-plugins python-click-repl python-kombu - python-pytz + python-tzdata python-vine)) (home-page "https://celeryproject.org") (synopsis "Distributed Task Queue") @@ -18066,7 +19311,7 @@ applications.") (define-public python-qasync (package (name "python-qasync") - (version "0.22.0") + (version "0.27.1") (source (origin ;; There are no tests in the PyPI tarball. @@ -18076,17 +19321,16 @@ applications.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1q9cllrwf94whr0f6mipa0hdq1rcyqvklwx19g35g2dav8f3xkjl")))) - (build-system python-build-system) + (base32 "0j6ksfnq9qfjdfppbkdz7jh6w0gnslwnckhafmlgim29b25g0z51")))) + (build-system pyproject-build-system) (arguments - `(#:test-target "pytest" - #:phases - (modify-phases %standard-phases - (add-before 'check 'set-qpa - (lambda _ - (setenv "QT_QPA_PLATFORM" "offscreen")))))) + (list #:phases + #~(modify-phases %standard-phases + (add-before 'check 'set-qpa + (lambda _ + (setenv "QT_QPA_PLATFORM" "offscreen")))))) (native-inputs - (list python-pytest python-pytest-runner)) + (list python-poetry-core python-pytest)) (propagated-inputs (list python-pyqt)) (home-page "https://github.com/CabbageDevelopment/qasync") @@ -19384,6 +20628,25 @@ and pluralizes English words, and transforms strings from CamelCase to underscored string.") (license license:expat))) +(define-public python-krb5 + (package + (name "python-krb5") + (version "0.5.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "krb5" version)) + (sha256 + (base32 "1jivws8dsscsmyqngbc71r4qw8qmn98pqmhylz01r5dd1ljfw9bi")))) + (build-system pyproject-build-system) + (inputs (list mit-krb5)) + (native-inputs (list python-cython python-k5test python-pytest)) + (home-page "https://github.com/jborean93/pykrb5") + (synopsis "Kerberos API bindings for Python") + (description "This library provides Python functions that wraps the +Kerberos 5 C API.") + (license license:expat))) + (define-public python-pylev (package (name "python-pylev") @@ -19805,6 +21068,36 @@ feels like an AST.") (arguments '(#:tests? #f)) (native-inputs '())))) +(define-public python-typeapi + (package + (name "python-typeapi") + (version "2.1.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "typeapi" version)) + (sha256 + (base32 "1652fc04gn6nkw8izim0g7v586f64fla6clinp5xq9rf739w3cs9")))) + (build-system pyproject-build-system) + (arguments + (list + #:tests? #false ;there are none + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'patch-build-system + (lambda _ + (substitute* "pyproject.toml" + (("^docs =.*") "docs = []\n"))))))) + (propagated-inputs (list python-typing-extensions)) + (native-inputs (list python-poetry-core)) + (home-page "https://pypi.org/project/typeapi/") + (synopsis "Type hints") + (description "The typeapi package provides an object-oriented interface +for introspecting PEP484 type hints at runtime, including forward references +that make use of the more recent PEP585 and PEP604 type hint features in +Python versions that don't natively support them.") + (license license:expat))) + (define-public python-typing-inspect (package (name "python-typing-inspect") @@ -19829,16 +21122,18 @@ inspection of types defined in the Python standard typing module.") (define-public python-lazy-loader (package (name "python-lazy-loader") - (version "0.2") + (version "0.3") (source (origin (method url-fetch) (uri (pypi-uri "lazy_loader" version)) (sha256 (base32 - "12piaj94m5wbx33cxb80xgnsvzgya6cp90zj12qsq064fm8pmp0f")))) + "0dwghffnsjjf4pi4gwbl43rx04jmap375hdamafs5cpm6j78js1v")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-pytest-cov)) + (list python-pre-commit + python-pytest + python-pytest-cov)) (propagated-inputs (list python-flit-core)) (home-page "https://scientific-python.org/specs/spec-0001/") @@ -20664,6 +21959,26 @@ multitouch applications.") Design spec without sacrificing ease of use or application performance.") (license license:expat))) +(define-public python-asyncinject + (package + (name "python-asyncinject") + (version "0.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "asyncinject" version)) + (sha256 + (base32 "0x57idiy19lzyn32klgm06r223z8gr2aqqk91gysbshq7jg8g3pf")))) + (build-system pyproject-build-system) + (native-inputs (list python-pytest python-pytest-asyncio)) + (home-page "https://github.com/simonw/asyncinject") + (synopsis + "Run async workflows using pytest-fixtures-style dependency injection") + (description + "This package lets you run asynchronous workflows using +pytest-fixtures-style dependency injection.") + (license license:asl2.0))) + (define-public python-asynckivy (package (name "python-asynckivy") @@ -20859,20 +22174,6 @@ JSON) codec.") reasoning, wrappers for natural language processing libraries.") (license license:asl2.0))) -;; Versions >=3.5 breaks backward-compatibility, -;; so we keep version 3.4.x around for a while. -(define-public python-nltk-3.4 - (package - (inherit python-nltk) - (version "3.4.5") - (source - (origin - (method url-fetch) - (uri (pypi-uri "nltk" version ".zip")) - (sha256 - (base32 "153x2clrnigs74jdgnn3qmljdjj4gprmvpdvh49i18ls4m8mbm5y")))) - (propagated-inputs (list python-six)))) - (define-public python-pymongo (package (name "python-pymongo") @@ -20969,6 +22270,26 @@ JSON) codec.") ;; number of files with other licenses. (list license:gpl2+ license:asl2.0 license:lgpl2.1+ license:cc-by-sa3.0)))) +(define-public python-namex + (package + (name "python-namex") + (version "0.0.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "namex" version)) + (sha256 + (base32 "16ynrq245c3nywv476izrc4bcacm9gxjzgr67ng91g929ny6bfl4")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #false)) ;there are none + (home-page "https://github.com/fchollet/namex") + (synopsis + "Separate implementation and public API surface of Python packages") + (description + "This package provides a simple utility to separate the +implementation of your Python package and its public API surface.") + (license license:asl2.0))) + (define-public python-natsort (package (name "python-natsort") @@ -22983,8 +24304,18 @@ manipulation, or @code{stdout}.") (base32 "1vi2fj31vygfcqrkimdmk52q2ldw08g9fn4v4zlgdfgcjlhqyhxn")))) (build-system python-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'fix-rdflib-6-compatibility + (lambda _ + ;; See https://github.com/trungdong/prov/issues/151 + (substitute* "src/prov/tests/test_rdf.py" + (("\\.serialize\\(format=\"nt\"\\)") + ".serialize(format=\"nt\", encoding=\"utf-8\")"))))))) (propagated-inputs - (list python-dateutil python-lxml python-networkx python-rdflib-5)) + (list python-dateutil python-lxml python-networkx python-rdflib)) (native-inputs (list graphviz python-pydot)) (home-page "https://github.com/trungdong/prov") @@ -24019,58 +25350,6 @@ profiling, and getting datetime-aware @acronym{UTC, Coordinated Universal Time} values as well as an event scheduler.") (license license:expat))) -(define-public python-activepapers - (package - (name "python-activepapers") - (version "0.2.2") - (source - (origin - (method url-fetch) - (uri (pypi-uri "ActivePapers.Py" version)) - (sha256 - (base32 - "12wkhjh90ffipjzv10swndp2xv9hd7xrxvg6v0n4n3i411pj4xb8")))) - (build-system python-build-system) - (arguments - `(#:modules ((ice-9 ftw) - (srfi srfi-1) - (guix build utils) - (guix build python-build-system)) - - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'delete-python2-code - (lambda _ - (for-each delete-file - '("lib/activepapers/builtins2.py" - "lib/activepapers/standardlib2.py" - "lib/activepapers/utility2.py")))) - (replace 'check - (lambda _ - ;; Deactivate the test cases that download files - (setenv "NO_NETWORK_ACCESS" "1") - ;; For some strange reason, some tests fail if nosetests runs all - ;; test modules in a single execution. They pass if each test - ;; module is run individually. - (for-each (lambda (filename) - (invoke "nosetests" - (string-append "tests/" filename))) - (scandir "tests" - (lambda (filename) - (string-suffix? ".py" filename))))))))) - (native-inputs - (list python-tempdir python-nose)) - (propagated-inputs - (list python-h5py)) - (home-page "https://www.activepapers.org/") - (synopsis "Executable papers for scientific computing") - (description - "ActivePapers is a tool for working with executable papers, which -combine data, code, and documentation in single-file packages, -suitable for publication as supplementary material or on repositories -such as figshare or Zenodo.") - (license license:bsd-3))) - (define-public python-semver (package (name "python-semver") @@ -24273,15 +25552,19 @@ such as lines length, trailing spaces, indentation, etc.") (define-public python-yapf (package (name "python-yapf") - (version "0.29.0") + (version "0.32.0") (source (origin (method url-fetch) (uri (pypi-uri "yapf" version)) (sha256 (base32 - "1pj3xzblmbssshi889b6n9hwqbjpabw6j0fimlng2sshd3226bki")))) - (build-system python-build-system) + "06vxqski7qss2h2iy4fd04czym0cwjrzkaab9h03wzpg6xfhixd3")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-importlib-metadata python-platformdirs python-tomli)) + (native-inputs + (list python-pytest)) (home-page "https://github.com/google/yapf") (synopsis "Formatter for Python code") (description "YAPF is a formatter for Python code. It's based off of @@ -24688,6 +25971,24 @@ based on the CPython 2.7 and 3.7 parsers.") with PEP 484 argument (and return) type annotations.") (license license:expat))) +(define-public python-typeguard-4 + (package + (inherit python-typeguard) + (name "python-typeguard") + ;; This is the latest version we can use, because python-typeguard >= + ;; 4.0.1 requires python-typing-extensions >= 4.7.0. + (version "4.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "typeguard" version)) + (sha256 + (base32 "11yrc7pv2fajmicwiyc92sb5gphlw3zbxww8f2prrsh6rgdv6kqr")))) + (build-system pyproject-build-system) + (arguments + '()) + (propagated-inputs (list python-typing-extensions)))) + (define-public bpython (package (name "bpython") @@ -24966,6 +26267,43 @@ cases, generating additional test cases, testing for your code, and submitting it.") (license license:expat))) +(define-public python-mpv-jsonipc + (package + (name "python-mpv-jsonipc") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-mpv-jsonipc" version)) + (sha256 + (base32 "0ymdwrx544a6gn6wm9dixpgzbfrbpxvcj5ys7m41cgb4lvpvx691")))) + (build-system pyproject-build-system) + (home-page "https://github.com/iwalton3/python-mpv-jsonipc") + (synopsis "Python API to control MPV using JSON IPC") + (description "Python MPV JSONIPC implements an interface similar to +python-mpv, but it uses the JSON IPC protocol instead of the C API.") + (license license:asl2.0))) + +(define-public python-jellyfin-apiclient + (package + (name "python-jellyfin-apiclient") + (version "1.9.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jellyfin-apiclient-python" version)) + (sha256 + (base32 "0r67cp9nizvn3cbslgi30zpd3mw4a6zal0ygik3jv5lni1xdkk5w")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-certifi python-requests python-urllib3 + python-websocket-client)) + (home-page "https://github.com/jellyfin/jellyfin-apiclient-python") + (synopsis "Python API client for Jellyfin") + (description "The Jellyfin ApiClient Python package makes it possible +to use the Jellyfin API from Python. It was extracted from the Jellyfin +Kodi plugin.") + (license license:gpl3+))) + (define-public python-parso (package (name "python-parso") @@ -25384,6 +26722,22 @@ library: to minimize boilerplate code in traditional extension modules by inferring type information using compile-time introspection.") (license license:bsd-3))) +;; Needed for scipy +(define-public pybind11-2.10 + (package + (inherit pybind11) + (name "pybind11") + (version "2.10.4") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pybind/pybind11") + (commit (string-append "v" version)))) + (sha256 + (base32 + "0rbcfvl7y472sykzdq3vrkw83kar0lpzhk3wq9yj9cdydl8cpfcz")) + (file-name (git-file-name name version)))))) + ;; This is needed for python-vaex-core. (define-public pybind11-2.3 (package @@ -25555,7 +26909,7 @@ Public Suffix List's private domains as well.") (define-public python-tldr (package (name "python-tldr") - (version "3.1.0") + (version "3.2.0") (source (origin ;; There's no test in PyPI. @@ -25565,7 +26919,7 @@ Public Suffix List's private domains as well.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1hxmprqg8c4cvs19n7f80f3y7jj74i8sc2dmq2gdjmsdrb54bbzc")))) + (base32 "0hkjsnz03p9pdfgk85wampha4pyr82bwmnj8hj6kigc784ddy2ag")))) (build-system python-build-system) (arguments (list #:phases @@ -25892,33 +27246,39 @@ codecs for use in data storage and communication applications.") (define-public python-zarr (package (name "python-zarr") - (version "2.13.3") + (version "2.17.1") (source (origin (method url-fetch) (uri (pypi-uri "zarr" version)) (sha256 (base32 - "135ls2q7zc98pk61a5cnh88j4hnnavcwasrswdjqyqvcc68b096v")))) - (build-system python-build-system) + "0qb2wj60i7v1c95k6m0pskx20ss6dxrj3ym0d7z4c98jfah3ljsn")))) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'disable-service-tests - (lambda _ - (setenv "ZARR_TEST_ABS" "0") - (setenv "ZARR_TEST_MONGO" "0") - (setenv "ZARR_TEST_REDIS" "0") - #t)) - (replace 'check - (lambda _ - (invoke "pytest" "-vv" "-k" "not lmdb") - #t))))) + (list + #:test-flags + #~(list "-n" "auto") + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'disable-service-tests + (lambda _ + (setenv "ZARR_TEST_ABS" "0") + (setenv "ZARR_TEST_MONGO" "0") + (setenv "ZARR_TEST_REDIS" "0")))))) (propagated-inputs - (list python-asciitree python-fasteners python-numcodecs + (list python-asciitree + python-fasteners + python-numcodecs python-numpy)) (native-inputs - (list python-pytest python-setuptools-scm)) + (list python-fsspec + python-pytest + python-h5py + python-pytest-doctestplus + python-pytest-timeout + python-pytest-xdist + python-setuptools-scm)) (home-page "https://github.com/zarr-developers/zarr-python") (synopsis "Chunked, compressed, N-dimensional arrays for Python") (description @@ -26317,50 +27677,6 @@ data.") they use the same path.") (license license:bsd-2))) -(define-public python-blosc - (package - (name "python-blosc") - (version "1.11.1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "blosc" version)) - (sha256 - (base32 - "0xmjs28sgpnb940zrhw010dq2m9d8a5h4fgnjyk6645fgfr1j8f2")) - (snippet - #~(begin (use-modules (guix build utils)) - (delete-file-recursively "blosc/c-blosc"))))) - (build-system python-build-system) - (arguments - (list #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'find-blosc - (lambda* (#:key inputs #:allow-other-keys) - (setenv "USE_SYSTEM_BLOSC" "1") - (setenv "Blosc_ROOT" #$(this-package-input "c-blosc")))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "python" "-m" "blosc.test"))))))) - (propagated-inputs - (list python-scikit-build python-numpy)) - (inputs (list c-blosc)) - (native-inputs (list cmake-minimal)) - (home-page "https://github.com/blosc/python-blosc") - (synopsis "Python wrapper for the Blosc data compressor library") - (description "Blosc is a high performance compressor optimized for binary -data. It has been designed to transmit data to the processor cache faster -than the traditional, non-compressed, direct memory fetch approach via a -@code{memcpy()} system call. - -Blosc works well for compressing numerical arrays that contains data with -relatively low entropy, like sparse data, time series, grids with -regular-spaced values, etc. - -This Python package wraps the Blosc library.") - (license license:bsd-3))) - (define-public python-partd (package (name "python-partd") @@ -26372,7 +27688,7 @@ This Python package wraps the Blosc library.") (sha256 (base32 "1sy3vdfyyx3bc5590zb7gwpsmimqz8m992x9hsydq8nmhixqjrxa")))) - (build-system python-build-system) + (build-system pyproject-build-system) (propagated-inputs (list python-blosc python-locket @@ -26449,7 +27765,8 @@ decisions with any given backend.") (list ;; Avoid coverage #:test-flags - #~(list "-m" "not gpu and not slow and not network" + #~(list "-n" "auto" + "-m" "not gpu and not slow and not network" "-k" (string-append ;; This one cannot be interrupted. "not test_interrupt" @@ -26490,7 +27807,8 @@ parentdir_prefix = dask- (add-before 'check 'pre-check (lambda _ (chdir "/tmp")))))) (propagated-inputs - (list python-cloudpickle + (list python-click ;needed at runtime + python-cloudpickle python-fsspec python-importlib-metadata ;needed at runtime for dask/_compatibility.py python-numpy @@ -26500,9 +27818,11 @@ parentdir_prefix = dask- python-toolz python-pyyaml)) (native-inputs - (list python-click - python-importlib-metadata - python-pytest python-pytest-runner python-pytest-rerunfailures + (list python-importlib-metadata + python-pytest + python-pytest-rerunfailures + python-pytest-runner + python-pytest-xdist python-versioneer)) (home-page "https://github.com/dask/dask/") (synopsis "Parallel computing with task scheduling") @@ -26988,13 +28308,7 @@ a mypy plugin that smooths over some limitations in the basic type hints. (file-name (git-file-name name version)) (sha256 (base32 "1yk2ak991kbl30xg8ldpggack1lwkizd7s5cpr28ir34z8iyjnpi")))) - (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? (invoke "pytest" "-vv"))))))) + (build-system pyproject-build-system) (native-inputs (list python-pytest python-pytest-trio python-trustme)) (propagated-inputs (list python-async-generator python-trio python-wsproto)) (home-page "https://github.com/HyperionGray/trio-websocket") @@ -27012,17 +28326,17 @@ the Trio framework}.") (define-public python-humanize (package (name "python-humanize") - (version "0.5.1") + (version "4.0.0") (source (origin (method url-fetch) (uri (pypi-uri "humanize" version)) (sha256 (base32 - "06dvhm3k8lf2rayn1gxbd46y0fy1db26m3h9vrq7rb1ib08mfgx4")))) - (arguments - '(#:tests? #f)) ; tests not in pypi archive - (build-system python-build-system) + "006vpl19bffy9fn0sssxbfakcvgrx7fhvy6l515fzln7vwpqf7zf")))) + (build-system pyproject-build-system) + (native-inputs + (list python-freezegun python-pytest)) (home-page "https://github.com/jmoiron/humanize") (synopsis "Print numerical information in a human-readable form") (description "This package provides a Python module that displays numbers @@ -27115,17 +28429,27 @@ format.") (define-public python-crontab (package (name "python-crontab") - (version "2.5.1") + (version "3.0.0") (source (origin (method url-fetch) (uri (pypi-uri name version)) (sha256 - (base32 "0cccrqc10r8781ba81x8r2frs3pl2m4hkm599k5358ak0xr7xgjb")))) + (base32 "0yd3vdhl7z8lxa30czsry65srha51ppdcwnhjgxx9pwx0djp9yvr")))) (build-system python-build-system) (arguments - ;; Comptability tests fail so they are disabled. - `(#:tests? #f)) + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'disable-failing-tests + (lambda _ + (substitute* '("tests/test_compatibility.py" + "tests/test_frequency.py") + (("test_07_non_posix_shell") + "__off_test_07_non_posix_shell") + ;; AssertionError: 48 != 24 + (("test_20_frequency_at_year") + "__off_test_20_frequency_at_year"))))))) (inputs (list python-dateutil)) (home-page "https://gitlab.com/doctormo/python-crontab/") @@ -27134,6 +28458,42 @@ format.") access the system cron automatically and simply using a direct API.") (license license:lgpl3+))) +(define-public python-apscheduler + (package + (name "python-apscheduler") + (version "3.10.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "APScheduler" version)) + (sha256 + (base32 + "0jpg9jyx95jafkq0hz6sx7r4l2z5gc599ivb9278kgnr4wdhgpz6")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-pytz + python-six + python-tzlocal)) + (native-inputs (list python-mock + python-twisted + python-gevent + python-setuptools-scm + python-sqlalchemy + python-pyside-6 + python-pytest + python-pytest-asyncio + python-pytest-cov + python-pytest-tornado5)) + (home-page "https://github.com/agronholm/apscheduler") + (synopsis "Task scheduling library for Python") + (description "Advanced Python Scheduler (APScheduler) is a Python library +that lets you schedule your Python code to be executed later, either just once +or periodically. + +You can add new jobs or remove old ones on the fly as you please. If you store +your jobs in a database, they will also survive scheduler restarts and maintain +their state. When the scheduler is restarted, it will then run all the jobs it +should have run while it was offline.") + (license license:expat))) + (define-public python-pylzma (package (name "python-pylzma") @@ -27190,22 +28550,17 @@ enumeration library in Python.") (file-name (git-file-name name version)) (sha256 (base32 "1p1a0ywlg5sq0ilcphmz9h4kayscz0q1lyfk57j7mwxyx4gl9cpi")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (invoke "python" "-m" "pytest" "-k" - (string-append - ;; Networking isn't available for these tests. - "not test_integration_with_listener_ipv6" - " and not test_launch_and_close_v4_v6" - " and not test_launch_and_close_context_manager" - " and not test_launch_and_close" - " and not test_close_multiple_times")))))))) + (list + #:test-flags + #~(list "-k" (string-append + ;; Networking isn't available for these tests. + "not test_integration_with_listener_ipv6" + " and not test_launch_and_close_v4_v6" + " and not test_launch_and_close_context_manager" + " and not test_launch_and_close" + " and not test_close_multiple_times")))) (native-inputs (list python-pytest)) (propagated-inputs @@ -27377,14 +28732,10 @@ translating between quadkey and tile coordinates.") (uri (pypi-uri "xyzservices" version)) (sha256 (base32 "1paxv4i0dws85md7csv7pf80jl3xh792mx8rxnsrk61ks3ivbsyg")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - '(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest" "-vv"))))))) + (list + #:test-flags #~(list "-m" "not request"))) (native-inputs (list python-pytest python-mercantile python-requests)) (home-page "https://github.com/geopandas/xyzservices") @@ -27595,17 +28946,50 @@ structure.") for YAML and JSON.") (license license:expat))) +(define-public python-dbus-python + (package + (name "python-dbus-python") + (version "1.3.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "dbus-python" version)) + (sha256 + (base32 "1y28h90v2ib8zqhs3r2yr7ycg8ccwvw3gqkvadlm12v1129q2rxd")))) + (build-system pyproject-build-system) + (arguments + (list #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'patch-requirements + (lambda _ + (substitute* (list "pyproject.toml" "setup.py") + (("'(ninja|patchelf)',?") "")) + (substitute* "setup.cfg" + (("(ninja|patchelf)") ""))))))) + (inputs (list dbus glib)) + (propagated-inputs (list python-pygobject)) + (native-inputs (list pkg-config + python-meson-python + meson ninja patchelf + python-sphinx python-sphinx-rtd-theme + python-tappy + python-wheel)) + (home-page "https://dbus.freedesktop.org/doc/dbus-python/") + (synopsis "Python bindings for libdbus") + (description "This package provides Python bindings to libdbus, the +reference implementation of the D-Bus protocol.") + (license license:expat))) + (define-public python-dbusmock (package (name "python-dbusmock") - (version "0.25.0") + (version "0.30.0") (source (origin (method url-fetch) (uri (pypi-uri "python-dbusmock" version)) (sha256 (base32 - "1nwl0gzzds2g1w1gfxfzlgrkb5hr1rrdyn619ml25c6b1rjyfk3g")))) + "1hanz6x76jq66ypdirga5h15zjs67kwysl6rmsf0i22dbdqrxdfv")))) (build-system python-build-system) (arguments (list #:modules `((guix build python-build-system) @@ -27616,6 +29000,9 @@ for YAML and JSON.") #~(modify-phases %standard-phases (add-after 'unpack 'patch-paths (lambda* (#:key inputs #:allow-other-keys) + (substitute* "tests/test_api.py" + (("/usr/bin/python3") + (which "python3"))) (substitute* "tests/test_code.py" (("/bin/bash") (which "bash"))) @@ -27642,11 +29029,11 @@ for YAML and JSON.") status)) (loop))))))))))))) (native-inputs - (list dbus python-pytest which)) + (list dbus python-pytest upower which)) (inputs (list dbus)) (propagated-inputs - (list python-dbus python-pygobject)) + (list python-dbus-python python-pygobject)) (home-page "https://github.com/martinpitt/python-dbusmock") (synopsis "Python library for mock D-Bus objects") (description "python-dbusmock allows for the easy creation of mock objects on @@ -27656,6 +29043,16 @@ hard (or impossible without root privileges) to set the state of the real services to what you expect in your tests.") (license license:lgpl3+))) +(define-public python-dbusmock-minimal + (package + (inherit python-dbusmock) + (name "python-dbusmock-minimal") + (arguments + (substitute-keyword-arguments (package-arguments python-dbusmock) + ((#:tests? _ #t) #f))) + (native-inputs (list which)) + (properties '((hidden? . #t))))) + (define-public python-jsonplus (package (name "python-jsonplus") @@ -28326,17 +29723,9 @@ files. These files are used to translate strings in android apps.") (uri (pypi-uri "watchdog" version)) (sha256 (base32 "1rx2nyl0cyj0v4ja795cl3gi26577c5wg48syr3byz3ndkgpavm3")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (invoke "python" "-m" "pytest" "-k" - ;; This test failed. - "not test_kill_auto_restart"))))))) + (list #:test-flags #~(list "-k" "not test_kill_auto_restart"))) (propagated-inputs (list python-pathtools python-pyyaml)) (native-inputs @@ -28482,14 +29871,24 @@ lowercase.") (define-public python-pypng (package (name "python-pypng") - (version "0.0.20") + (version "0.20220715.0") (source (origin (method url-fetch) (uri (pypi-uri "pypng" version)) (sha256 - (base32 "02qpa22ls41vwsrzw9r9qhj1nhq05p03hb5473pay6y980s86chh")))) - (build-system python-build-system) + (base32 "1hg24zja235bkbny82hx7sy7qlzfbabxph2lvqaq61vgm4xl773k")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-before 'check 'pre-check + (lambda _ + (setenv "PYTHONPATH" + (string-append (getcwd) "/code:" + (getenv "GUIX_PYTHONPATH")))))))) + (native-inputs (list python-pytest)) (home-page "https://github.com/drj11/pypng") (synopsis "Pure Python PNG image encoder/decoder") (description @@ -28782,6 +30181,37 @@ usable as a configuration language. This Python package implements parsing and dumping of JSON5 data structures.") (license license:asl2.0))) +(define-public python-farama-notifications + (package + (name "python-farama-notifications") + (version "0.0.4") + (source + ;; The version on pypi does not include tests. + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Farama-Foundation/Farama-Notifications") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1k1x48xpvhankw7vbjp20ljwran247aphc2qncqrxivrkgzwjjji")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python3" "tests/ci-test.py"))))))) + (native-inputs (list python-pytest)) + (home-page "https://github.com/Farama-Foundation/Farama-Notifications") + (synopsis "Notifications for all Farama Foundation maintained libraries") + (description + "This package allows for providing notifications for all Farama +Foundation maintained libraries.") + (license license:expat))) + (define-public python-freetype-py (package (name "python-freetype-py") @@ -29355,7 +30785,7 @@ accessor layer.") (define-public pyzo (package (name "pyzo") - (version "4.13.3") + (version "4.15.0") (source (origin (method git-fetch) @@ -29365,7 +30795,7 @@ accessor layer.") (file-name (git-file-name name version)) (sha256 (base32 - "1m0mrp20wjvy804214f4zzlbaqrakam0g3qr562yn2mjcgfba554")))) + "0m2sp65q21hhlfkvyby4sjc8cmwv3l0avw42xsna8za8ax9xadxr")))) (build-system python-build-system) (arguments `(#:phases @@ -29866,7 +31296,7 @@ and have a maximum lifetime built-in.") (define-public python-devtools (package (name "python-devtools") - (version "0.6") + (version "0.12.2") (source (origin (method git-fetch) @@ -29875,18 +31305,28 @@ and have a maximum lifetime built-in.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "15zczdcm90wl54c68f1qjb05nkd5bjsc9xjl3lk4frs7k7wkmrvp")))) - (build-system python-build-system) + (base32 "0snmx7f0s44rzzx8advzmgj5av9dlpz1kx05f7ysya8xrhv5nwfl")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + ;; Disable some failing tests. + #~(list "-k" (string-append "not test_print_subprocess" + " and not test_simple") + "--ignore=tests/test_insert_assert.py") + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "pyproject.toml" + ;; Pygments 2.12.0 is available. + (("2.15.0") "2.12.0") + ;; executing 0.8.2 is available. + (("1.1.1") "0.8.2"))))))) (native-inputs - (list python-pytest python-pytest-mock)) + (list python-hatchling python-pytest python-pytest-mock)) (propagated-inputs - (list python-pygments)) - (arguments - `(#:phases (modify-phases %standard-phases - (replace 'check - (lambda _ - (invoke "pytest") - #t))))) + (list python-asttokens python-executing python-pygments)) (home-page "https://github.com/samuelcolvin/python-devtools") (synopsis "Debug command and development tools") (description @@ -30216,7 +31656,7 @@ module patches @code{asyncio} to allow nested use of @code{asyncio.run} and (define-public python-simpervisor (package (name "python-simpervisor") - (version "0.4") + (version "1.0.0") (source (origin ;; Tests not included in release. @@ -30226,20 +31666,18 @@ module patches @code{asyncio} to allow nested use of @code{asyncio.run} and (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1brsisx7saf4ic0dih1n5y7rbdbwn1ywv9pl32bch3061r46prvv")))) - (build-system python-build-system) + (base32 "0drvqxbr6fpydb4d7z5dhn97d578gf39sd8cawyl6ksf1f4y8yzg")))) + (build-system pyproject-build-system) (arguments - `(#:tests? #f ; Test suite can't find aiohttp. - #:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (invoke "pytest" "--maxfail" "3" "--verbose")) - #t))))) + (list + #:test-flags '(list "-n" (number->string (parallel-job-count))))) (native-inputs - (list python-aiohttp python-pytest python-pytest-asyncio)) + (list python-aiohttp + python-hatchling + python-psutil + python-pytest + python-pytest-asyncio + python-pytest-xdist)) (home-page "https://github.com/yuvipanda/simpervisor") (synopsis "Simple async process supervisor") (description @@ -30761,6 +32199,41 @@ handling those variations.") Qt applications.") (license license:expat))) +(define-public python-pystray + (package + (name "python-pystray") + (version "0.19.5") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/moses-palmer/pystray") + (commit "1907f8681d6d421517c63d94f425f9cdd74d0034"))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1vj6c8s7rbc7xc4bi5brx5629ls1ri9prcw9290v85hagilmp609")))) + (build-system python-build-system) + (arguments + (list + ;; The test suite requires user interaction, there are no automated + ;; tests. + #:tests? #false + #:phases #~(modify-phases %standard-phases + (add-before 'sanity-check 'use-dummy-backend + (lambda _ + ;; Without setting this, pystray tries to connect to + ;; X11 on import. + (setenv "PYSTRAY_BACKEND" "dummy")))))) + (native-inputs (list python-sphinx)) + (propagated-inputs (list python-pillow python-six python-xlib)) + (home-page "https://github.com/moses-palmer/pystray") + (synopsis "Create a system tray icon") + (description "This library allows you to create a system tray icon. +It makes it possible to specify an icon, a title and a callback for when +the icon is activated. The icon and title can be changed after the icon +has been created, and the visibility of the icon can be toggled.") + (license license:lgpl3+))) + (define-public python-bitstring (package (name "python-bitstring") @@ -31000,7 +32473,18 @@ and frame grabber interface.") ;; nondeterministically (see: ;; https://github.com/scikit-build/scikit-build/issues/711). "and not test_generator_cleanup " - "and not test_generator_selection ")))))))) + "and not test_generator_selection " + ;; … and there's more of them + "and not test_cxx_compiler " + "and not test_fortran_compiler "))))) + (add-after 'install 'install-cmake + (lambda* (#:key outputs #:allow-other-keys) + (let ((lib (string-append (assoc-ref outputs "out") + "/lib/cmake/modules"))) + (mkdir-p lib) + (with-directory-excursion "skbuild/resources/cmake" + (for-each (lambda (file) (install-file file lib)) + (find-files "." "\\.cmake"))))))))) (native-inputs (list cmake-minimal gfortran @@ -31628,6 +33112,30 @@ graph can be output for rendering by GraphViz or yEd.") function implementations based on the types of the arguments.") (license license:bsd-3))) +(define-public python-multimethod + (package + (name "python-multimethod") + (version "1.10") + (source + (origin + ;; No tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/coady/multimethod") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "07xv92q7f4bkp6dzkqvcv0zxr11729qdak4s3ldmbhdwgsf44g5h")))) + (build-system pyproject-build-system) + (native-inputs (list python-pytest)) + (home-page "https://github.com/coady/multimethod") + (synopsis "Python support for multiple argument dispatching") + (description + "This package provides a decorator for adding multiple argument +dispatching to functions. The decorator creates a multimethod object as +needed and registers the function with its annotations.") + (license license:asl2.0))) + (define-public python-logical-unification (package (name "python-logical-unification") @@ -32194,17 +33702,24 @@ and powerful way to handle real-world data, featuring: (define-public python-box (package (name "python-box") - (version "5.3.0") + (version "7.1.1") (source + ;; The PyPI tarball does not contain all test files. (origin - (method url-fetch) - (uri (pypi-uri "python-box" version)) + (method git-fetch) + (uri + (git-reference + (url "https://github.com/cdgriffith/Box") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "0jhrdif57khx2hsw1q6a9x42knwcvq8ijgqyq1jmll6y6ifyzm2f")))) - (build-system python-build-system) + "1v8s6wji17fh87nvamzysvxi8f51h6szh6h6dxvids56gg5zc553")))) + (build-system pyproject-build-system) (propagated-inputs - (list python-msgpack python-ruamel.yaml python-toml)) + (list python-msgpack python-ruamel.yaml python-tomli python-tomli-w)) + (native-inputs + (list python-cython python-pytest python-wheel)) (home-page "https://github.com/cdgriffith/Box") (synopsis "Advanced Python dictionaries with dot notation access") (description @@ -32340,30 +33855,40 @@ Python @code{set} interface.") (define-public dynaconf (package (name "dynaconf") - (version "3.1.7") + (version "3.2.4") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/rochacbruno/dynaconf") + (url "https://github.com/dynaconf/dynaconf") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 - "0pjyjsdzairpn5vq8nzddhxwxmr18grn272nj31wcy2ipwdl3c3h")) + "0fj2ffvzfvjf4d7f672h5x5fzq26f8hax9j3dfsix158fwm0212w")) (patches (search-patches "dynaconf-unvendor-deps.patch")) (modules '((guix build utils))) (snippet '(begin ;; Remove vendored dependencies (let ((unvendor '("click" "dotenv" "ruamel" "toml"))) (with-directory-excursion "dynaconf/vendor" - (for-each delete-file-recursively unvendor)) - (with-directory-excursion "dynaconf/vendor_src" - (for-each delete-file-recursively unvendor))))))) - (build-system python-build-system) + (for-each delete-file-recursively unvendor))) + ;; Lower coverage quality gate for unit tests + (substitute* ".coveragerc" + (("fail_under = 95") "fail_under = 50")))))) + (build-system pyproject-build-system) (arguments - `(#:phases + `(#:test-flags + '("-k" + ,(let ((click-tests '("test_negative_get" + "test_inspect_invalid_format"))) + ;; Disable integration tests + (string-append "not integration and not " + ;; These tests fail because we use Click 8.* instead of + ;; Click 7 + (string-join click-tests " and not ")))) + #:phases (modify-phases %standard-phases (add-after 'unpack 'patch-for-click-8 (lambda _ @@ -32371,14 +33896,19 @@ Python @code{set} interface.") (("click.get_os_args\\()") ;deprecated from Click 8.1+ "sys.argv[1:]")))) (replace 'check - (lambda* (#:key tests? outputs #:allow-other-keys) + (lambda* (#:key tests? test-flags #:allow-other-keys) (when tests? ;; These tests depend on hvac and a live Vault process. (delete-file "tests/test_vault.py") - (invoke "make" "test_only"))))))) + (apply invoke + `("py.test" ,@test-flags "-v" + "--cov-config" ".coveragerc" + "--cov=dynaconf" + "-l" "--tb=short" + "--maxfail=1" "tests/")))))))) (propagated-inputs (list python-click python-configobj python-dotenv-0.13.0 - python-ruamel.yaml python-toml)) + python-ruamel.yaml-0.16 python-toml python-tomli)) (native-inputs (list python-django python-flask python-pytest python-pytest-cov python-pytest-mock)) @@ -32545,18 +34075,20 @@ of several plugins.") (define-public python-doit (package (name "python-doit") - (version "0.34.0") + (version "0.36.0") (source (origin (method url-fetch) (uri (pypi-uri "doit" version)) (sha256 - (base32 "0bf0m9n0hyjvjpv051zd26725j8jr23gyvc37v3kkadwbh8dxwcf")))) - (build-system python-build-system) + (base32 "1g1lwaxb9q3a6c24sr3gw5bspsk5frbrk2frb7z25jqljp67rl3i")))) + (build-system pyproject-build-system) + ;; This is not a serious test failure. It's probably due to the load path + ;; at test time. + (arguments (list #:test-flags '(list "-k" "not test_execute"))) (propagated-inputs - (list python-cloudpickle python-pyinotify)) - (native-inputs - (list python-pytest)) + (list python-cloudpickle python-importlib-metadata)) + (native-inputs (list python-pytest)) (home-page "https://pydoit.org") (synopsis "Automation tool to execute any kind of task in a build-tools fashion") @@ -32565,7 +34097,7 @@ build-tools to execute any kind of task. A task describes some computation to be done (actions), and contains some extra meta-data. The actions can be external programs or Python functions. A -single task may define more than one action.doit uses the task’s meta-data +single task may define more than one action. doit uses the task’s meta-data to: @itemize @@ -32597,6 +34129,26 @@ to: "This package provides a port of the serialize and unserialize functions of PHP for Python") (license license:bsd-3))) +(define-public python-pydevtool + (package + (name "python-pydevtool") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pydevtool" version)) + (sha256 + (base32 "12pwhvvm4pgvfxj18ylb66drxm28b2cpb5rbxqrsrk1k7m7vmqr5")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #false)) ;no tests + (propagated-inputs (list python-doit python-rich-click)) + (home-page "https://github.com/pydoit/pydevtool") + (synopsis "CLI dev tools powered by pydoit") + (description "This package provides command line tools, powered by pydoit. +It offers integration with @code{click} and @code{rich} for custom CLI and +these linters: @code{pycodestlye}, @code{pyflakes}") + (license license:expat))) + (define-public nikola (package (name "nikola") @@ -34603,6 +36155,36 @@ The database contains over 6.5 million entries, over 3.1 million unique word forms, and about 300,000 distinct lemmas.") (license license:expat))) +(define-public python-icecream + (package + (name "python-icecream") + (version "2.1.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "icecream" version)) + (sha256 + (base32 "1pj9kf7lwm799wppvngg3sndi0qf13iq33yhl59n3hsf6z1sg90a")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + '(list "-k" + ;; These tests are failing due to a bug: + ;; https://github.com/gruns/icecream/issues/144 + (string-append "not testEnableDisable" + " and not testSingledispatchArgumentToString")))) + (propagated-inputs (list python-asttokens python-colorama python-executing + python-pygments)) + (native-inputs (list python-hypothesis python-pytest)) + (home-page "https://github.com/gruns/icecream") + (synopsis + "Single function call to debug variables, expressions, and program execution") + (description + "This tool lets you debug variables, expressions, and program execution +with one function call. IceCream makes print debugging a little sweeter.") + (license license:expat))) + (define-public python-icegrams (package (name "python-icegrams") |