diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 6683 |
1 files changed, 3011 insertions, 3672 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index b3a350aca4..e13c47f959 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -37,7 +37,7 @@ ;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com> ;;; Copyright © 2017, 2018 Adriano Peluso <catonano@gmail.com> ;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au> -;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe <m.othacehe@gmail.com> +;;; Copyright © 2017, 2018, 2019, 2021 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2017 José Miguel Sánchez García <jmi2k@openmailbox.org> ;;; Copyright © 2017, 2020, 2021 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017, 2018, 2019 Kei Kebreau <kkebreau@posteo.net> @@ -149,6 +149,7 @@ #:use-module (gnu packages enchant) #:use-module (gnu packages file) #:use-module (gnu packages fontutils) + #:use-module (gnu packages freedesktop) #:use-module (gnu packages gcc) #:use-module (gnu packages geo) #:use-module (gnu packages ghostscript) @@ -226,6 +227,7 @@ #:use-module (guix download) #:use-module (guix git-download) #:use-module (guix hg-download) + #:use-module (guix gexp) #:use-module (guix utils) #:use-module (guix build-system gnu) #:use-module (guix build-system cmake) @@ -254,9 +256,7 @@ (add-installed-pythonpath inputs outputs) (invoke "pytest" "--cov=janus" "--cov=tests"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-asyncio" ,python-pytest-asyncio))) + (list python-pytest python-pytest-cov python-pytest-asyncio)) (home-page "https://github.com/aio-libs/janus/") (synopsis "Sync-async queue to interoperate between asyncio tasks and classic threads") @@ -298,11 +298,8 @@ design}.") (setenv "CYBUILD" "True") (invoke "pytest" "--cov=logbook" "-r" "s" "tests"))))))) (native-inputs - `(("python-cython" ,python-cython) - ("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-google-brotli" ,python-google-brotli))) + (list python-cython python-mock python-pytest python-pytest-cov + python-google-brotli)) (home-page "https://github.com/getlogbook/logbook") (synopsis "Logbook is a logging replacement for Python") (description @@ -324,13 +321,9 @@ applications in mind and the idea to make logging fun.") "1hxd45dnwa9yv908acarr98n2drmar66wzq9z2qd3irj24srzr3w")))) (build-system python-build-system) (inputs - `(("libx11" ,libx11) - ("libxext" ,libxext))) + (list libx11 libxext)) (propagated-inputs - `(("python-attrs" ,python-attrs) - ("python-docopt" ,python-docopt) - ("python-pillow" ,python-pillow) - ("python-xlib" ,python-xlib))) + (list python-attrs python-docopt python-pillow python-xlib)) (home-page "https://github.com/seebye/ueberzug") (synopsis "Command line util to display images in combination with X11") (description "Überzug is a command line util which draws images on @@ -359,7 +352,7 @@ workspaces. "0qka44n88y3qcj7xz0k0f3qb4phcg4z0wvd4jcii9lcr6rvbiqn5")))) (build-system python-build-system) (native-inputs - `(("python-pytest", python-pytest))) + (list python-pytest)) (arguments '(#:phases (modify-phases %standard-phases @@ -368,8 +361,7 @@ workspaces. (when tests? (invoke "pytest"))))))) (inputs - `(("python-six", python-six) - ("python-termcolor", python-termcolor))) + (list python-six python-termcolor)) (synopsis "Library for automatically generating command line interfaces") (description "Fire is a library for automatically generating command line interfaces @@ -432,13 +424,10 @@ features of the Python's built-in dict.") "0ybs7kkp0cpl8zn1lvf7481xhssg1bbhh5la2cjzdm5yibashyxa")))) (build-system python-build-system) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools) ; Won't build without this. - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-coverage python-nose python-setuptools ; Won't build without this. + python-setuptools-scm)) (propagated-inputs - `(("python-toml" ,python-toml) - ("python-flake8" ,python-flake8))) + (list python-toml python-flake8)) (home-page "https://github.com/casperdcl/argopt") (synopsis "Generate a command-line interface from a docstring") (description "This package provides tools to define a command line interface @@ -480,11 +469,9 @@ decorators, including variants of the Python standard library's (arguments `(#:tests? #f)) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-flake8" ,python-flake8) - ("python-pytest" ,python-pytest))) + (list python-coverage python-flake8 python-pytest)) (propagated-inputs - `(("python-colorama" ,python-colorama))) + (list python-colorama)) (home-page "http://github.com/timofurrer/colorful") (synopsis "Terminal string styling") (description "Colorful provides an array of text styles, that can be used @@ -504,7 +491,7 @@ as functions or string constants to form colored terminal output.") (base32 "1iirah0kydrdp505qnjj6gi54avcr7z0hbkfx9vmh8myr30rpz6q")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/pavdmyt/yaspin") (synopsis "Yet Another Terminal Spinner") (description "Yaspin provides a terminal spinner to indicate the progress @@ -524,10 +511,9 @@ during long operations.") (base32 "106akalywfmnypzkdrhgz4n4740a8xayspybsw59kq06vz8i2qrc")))) (build-system python-build-system) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (propagated-inputs - `(("python-nltk" ,python-nltk-3.4))) + (list python-nltk-3.4)) (home-page "https://github.com/yeraydiazdiaz/lunr.py") (synopsis "Full-text search library") @@ -548,9 +534,7 @@ that best match text queries.") (base32 "1bvaqbna1ihb4y2mv9pmvqcq3r9j6lwbbii99dani8lxx4dqqvs5")))) (build-system python-build-system) (propagated-inputs - `(("python-jinja2" ,python-jinja2) - ("python-mistune" ,python-mistune) - ("python-pygments" ,python-pygments))) + (list python-jinja2 python-mistune python-pygments)) (home-page "https://pypi.org/project/mrkd/") (synopsis "Python Markdown implementation") (description @@ -580,13 +564,13 @@ HTML") (substitute* "setup.py" (("==") ">="))))))) (propagated-inputs - `(("python-click" ,python-click) - ("python-jinja2" ,python-jinja2) - ("python-livereload" ,python-livereload) - ("python-lunr" ,python-lunr) - ("python-markdown" ,python-markdown) - ("python-pyyaml" ,python-pyyaml) - ("python-tornado" ,python-tornado))) + (list python-click + python-jinja2 + python-livereload + python-lunr + python-markdown + python-pyyaml + python-tornado)) (home-page "https://www.mkdocs.org") (synopsis "Project documentation with Markdown") (description "MkDocs is a static site generator geared towards building @@ -610,7 +594,7 @@ configured with a single YAML configuration file.") (arguments `(#:tests? #f)) (propagated-inputs - `(("python-markdown" ,python-markdown))) + (list python-markdown)) (home-page "https://github.com/facelessuser/pymdown-extensions") (synopsis "Extension pack for Python Markdown") (description "PyMdown Extensions is a collection of extensions for Python @@ -640,11 +624,8 @@ Markdown. All extensions are found under the module namespace of pymdownx.") (substitute* "requirements.txt" (("mkdocs-material-extensions.*$") ""))))))) (propagated-inputs - `(("python-markdown" ,python-markdown) - ("python-mkdocs" ,python-mkdocs) - ("python-pygments" ,python-pygments) - ("python-pymdown-extensions" - ,python-pymdown-extensions))) + (list python-markdown python-mkdocs python-pygments + python-pymdown-extensions)) (home-page "https://squidfunk.github.io/mkdocs-material/") (synopsis "Material Design theme for MkDocs") (description "This package provides a theme plugin for the static site @@ -682,13 +663,10 @@ generator MkDocs.") ("gnupg" ,gnupg) ("pkg-config" ,pkg-config))) (propagated-inputs - `(("python-aiodns" ,python-aiodns) - ("python-aiohttp" ,python-aiohttp) - ("python-pyasn1" ,python-pyasn1) - ("python-pyasn1-modules" ,python-pyasn1-modules))) + (list python-aiodns python-aiohttp python-pyasn1 + python-pyasn1-modules)) (inputs - `(("libidn" ,libidn) - ("python" ,python))) ; We are building a Python extension. + (list libidn python)) ; We are building a Python extension. (synopsis "XMPP library without threads") (description "Slixmpp is a XMPP library for Python 3.7+. It is a fork of SleekXMPP. Its goal is to only rewrite the core of the library (the low level @@ -709,12 +687,10 @@ threads.") "1j36v9fcpmmd4985ix0cwnvcq71rkrn5cjiiv0id9vkl4kpxh0gv")))) (build-system python-build-system) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm) - ("python-sphinx" ,python-sphinx) - ("python-tornado" ,python-tornado) - ("python-pytest" ,python-pytest))) + (list python-setuptools-scm python-sphinx python-tornado + python-pytest)) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (arguments `(#:phases (modify-phases %standard-phases (replace 'check @@ -751,9 +727,9 @@ task of adding retry behavior to just about anything.") (invoke "py.test"))) #t))))) (propagated-inputs - `(("python-requests" ,python-requests))) + (list python-requests)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/eternnoir/pyTelegramBotAPI") (synopsis "Python Telegram bot api") (description "This package provides a simple, but extensible Python @@ -772,17 +748,12 @@ implementation for the Telegram Bot API.") "1lpk8zmfv8vz090h5d0hzb4n39wgasxdd3x3bpn3v1x1n9dfzaih")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (arguments `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - ;; Extend PYTHONPATH so the built package will be found. - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-p" "no:logging") - #t))))) + (invoke "pytest" "-p" "no:logging")))))) (home-page "https://github.com/borntyping/python-colorlog") (synopsis "Log formatting with colors for python") (description "The @code{colorlog.ColoredFormatter} is a formatter for use @@ -801,7 +772,7 @@ with Python's logging module that outputs records using terminal colors.") "1gscnlvj37m421ch3akm3kddxqkrgbg5zrpwy2ky1j59w6vclzg3")))) (build-system python-build-system) (propagated-inputs - `(("python-psutil" ,python-psutil))) + (list python-psutil)) (home-page "https://github.com/rasbt/pyprind") (synopsis "Python Progress Bar and Percent Indicator Utility") (description "The PyPrind (Python Progress Indicator) module provides a @@ -821,9 +792,9 @@ of a loop structure or other iterative computation.") "118zm25c8mlajfl0pzssnwz4b8lamj9dgymla9rn4nla7l244a0r")))) (build-system python-build-system) (native-inputs - `(("pkg-config" ,pkg-config))) + (list pkg-config)) (inputs - `(("libgphoto2" ,libgphoto2))) + (list libgphoto2)) (home-page "https://github.com/jim-easterbrook/python-gphoto2") (synopsis "Python interface to libgphoto2") (description "@code{python-gphoto2} is a comprehensive Python interface @@ -843,7 +814,7 @@ automatically generate the interface code.") "1visbisfini5j14bdzgs95yssw6sm4pfzyq1n3lfvbyjxw7i485g")))) (build-system python-build-system) (native-inputs - `(("python-d2to1" ,python-d2to1))) + (list python-d2to1)) (home-page "https://github.com/vaab/colour") (synopsis "Convert and manipulate various color representations") (description "Pythonic way to manipulate color representations (HSL, RVB, @@ -862,7 +833,7 @@ web, X11, ...).") "09fq7pq1z8d006xh5z75rm2lk61v6yn2xhy53z4gsgibhqb2vvs9")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/embray/d2to1") (synopsis "Allows for distutils2-like setup.cfg files as package metadata in python") @@ -883,10 +854,9 @@ distribute/setuptools setup.py script.") "0vrhrpr70i61y5q5ysk341x1539ff1q1k82g59zq69lv16s0f76s")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-mock" ,python-mock))) + (list python-pytest python-mock)) (inputs - `(("libraw" ,libraw))) + (list libraw)) (home-page "https://rawkit.readthedocs.io") (synopsis "Ctypes-based LibRaw binding for Python") (description "The rawkit package provides two modules: rawkit and libraw. @@ -907,7 +877,7 @@ interacting with the low-level LibRaw C APIs.") "1zmvmwgxyzvm83818skhn8b4wrci4kmnixaax8q3ia5cn7xrmj6v")))) (build-system python-build-system) (propagated-inputs - `(("python-tkinter" ,python "tk"))) + (list `(,python "tk"))) (home-page "https://github.com/robertlugg/easygui") (synopsis "GUI programming module for Python") (description "EasyGUI is a module for very simple, very easy GUI @@ -928,11 +898,9 @@ simple function calls.") (base32 "07s3arn85ri92im6x3ipljdmrxmpik7irs06i6lm17j1x6j9841d")))) (build-system python-build-system) (inputs - `(("md4c" ,md4c))) + (list md4c)) (native-inputs - `(("python-flake8" ,python-flake8) - ("python-pkgconfig" ,python-pkgconfig) - ("pkg-config" ,pkg-config))) + (list python-flake8 python-pkgconfig pkg-config)) (home-page "https://github.com/dominickpastore/pymd4c") (synopsis "Python bindings for MD4C") (description @@ -953,10 +921,9 @@ to CommonMark.") "0mhpxs7vlqx8w75z93dy7nnvx89kwfdjkla03l19an15rlyqyspd")))) (build-system python-build-system) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm) - ("python-pytest" ,python-pytest))) + (list python-setuptools-scm python-pytest)) (inputs - `(("libmediainfo" ,libmediainfo))) + (list libmediainfo)) (arguments `(#:phases (modify-phases %standard-phases @@ -964,25 +931,22 @@ to CommonMark.") (lambda _ (substitute* "pymediainfo/__init__.py" (("libmediainfo.so.0") - (string-append (assoc-ref %build-inputs "libmediainfo") - "/lib/libmediainfo.so.0"))) - #t)) + (search-input-file %build-inputs + "/lib/libmediainfo.so.0"))))) (replace 'check - (lambda* (#:key tests? #:allow-other-keys) + (lambda* (#:key tests? inputs outputs #:allow-other-keys) (when tests? - ;; Extend PYTHONPATH so the built package will be found. - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) - ;; Skip the only failing test "test_parse_url" + (add-installed-pythonpath inputs outputs) + ;; Skip the only failing test "test_parse_url" because it tries + ;; to access the internet. (invoke "pytest" "-vv" "-k" "not test_parse_url"))))))) (home-page "https://github.com/sbraz/pymediainfo") (synopsis "Python wrapper for the mediainfo library") (description - "Python wrapper for the mediainfo library to access the technical and tag -data for video and audio files.") + "This package provides a Python wrapper for the mediainfo library to +access the technical and tag data for video and audio files.") (license license:expat))) (define-public python-psutil @@ -1039,14 +1003,12 @@ iotop, uptime, pidof, tty, taskset, pmap.") #t)))) (build-system python-build-system) (native-inputs - `(("python-cython" ,python-cython) - ("python-matplotlib" ,python-matplotlib) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-cython python-matplotlib python-pytest + python-pytest-cov)) (inputs - `(("geos" ,geos))) + (list geos)) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (arguments `(#:phases (modify-phases %standard-phases @@ -1085,7 +1047,7 @@ planar geometric objects. It is based on the @code{GEOS} library.") "1f8i4zwj5vmpzbz6b17bljy4399gx5aq7vsyw63sz2qgyjcd73yh")))) (build-system python-build-system) (native-inputs - `(("python-pep8" ,python-pep8))) + (list python-pep8)) (home-page "https://github.com/skorokithakis/shortuuid") (synopsis "Generator library for concise, unambiguous and URL-safe UUIDs") (description @@ -1116,11 +1078,8 @@ module and then similar looking characters are removed.") (invoke "pytest")) #t))))) (native-inputs - `(("python-cython" ,python-cython) - ("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm) - ("python-toml" ,python-toml) - ("python-wheel" ,python-wheel))) + (list python-cython python-pytest python-setuptools-scm python-toml + python-wheel)) (home-page "https://github.com/python-useful-helpers/logwrap") (synopsis "Decorator for logging function arguments") (description "This package provides a decorator to log function arguments @@ -1140,7 +1099,7 @@ and function call return values in a human-readable way.") "1r9987qmy1pz3hq54160bapqsywpq14waw4w9x3ly8hmq7kpgfbj")))) (build-system python-build-system) (native-inputs - `(("python-mock" ,python-mock))) + (list python-mock)) (home-page "https://github.com/Anaconda-Platform/clyent") (synopsis "Command line client library") (description "Clyent is a Python command line utility library. It is used @@ -1156,23 +1115,22 @@ by @code{binstar}, @code{binstar-build}, and @code{chalmers}.") (version "2.9.0") (source (origin - (method url-fetch) - (uri (pypi-uri "Babel" version)) - (sha256 - (base32 - "018yg7g2pa6vjixx1nx41cfispgfi0azzp0a1chlycbj8jsil0ys")))) + (method url-fetch) + (uri (pypi-uri "Babel" version)) + (sha256 + (base32 + "018yg7g2pa6vjixx1nx41cfispgfi0azzp0a1chlycbj8jsil0ys")))) (build-system python-build-system) (native-inputs - `(("python-freezegun" ,python-freezegun) - ("python-pytest" ,python-pytest))) + (list python-freezegun python-pytest tzdata-for-tests)) (propagated-inputs - `(("python-pytz" ,python-pytz))) + (list python-pytz)) (arguments `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ (invoke "pytest" "-vv")))))) - (home-page "http://babel.pocoo.org/") + (home-page "https://babel.pocoo.org/") (synopsis "Tools for internationalizing Python applications") (description @@ -1223,19 +1181,19 @@ and verifies that it matches the intended target hostname.") "02dy0b1k7qlhn7ajyzkrvxhyhjj0hzcq6ws3zjml9hkdz5znz92g")))) (build-system python-build-system) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-hypothesis" ,python-hypothesis-5.23) ; use_true_random=... from >=5.19.0 - ("python-pre-commit" ,python-pre-commit) - ("python-py" ,python-py) - ("python-pytest" ,python-pytest) - ("python-pytest-benchmark" ,python-pytest-benchmark) - ("python-pytest-cov" ,python-pytest-cov) - ("python-setuptools-scm" ,python-setuptools-scm) - ("python-sortedcollections" ,python-sortedcollections) - ("python-sortedcontainers" ,python-sortedcontainers) - ("python-sphinx" ,python-sphinx) - ("python-sphinx-autodoc-typehints" ,python-sphinx-autodoc-typehints) - ("python-tox" ,python-tox))) + (list python-coverage + python-hypothesis + python-pre-commit + python-py + python-pytest + python-pytest-benchmark + python-pytest-cov + python-setuptools-scm + python-sortedcollections + python-sortedcontainers + python-sphinx + python-sphinx-autodoc-typehints + python-tox)) (arguments `(#:phases (modify-phases %standard-phases (add-after 'unpack 'relax-reqs @@ -1324,14 +1282,6 @@ Expressions are constructed from parsed strings or directly in Python.") (modify-phases %standard-phases (replace 'check (lambda _ - ;; The 'runexamples' script sets PYTHONPATH to CWD, then goes - ;; on to import numpy. Somehow this works on their CI system. - ;; Let's just manage PYTHONPATH here instead. - (substitute* "runexamples.sh" - (("export PYTHONPATH=.*") "")) - (setenv "PYTHONPATH" - (string-append (getcwd) ":" - (getenv "PYTHONPATH"))) (invoke "./runexamples.sh") (invoke "nosetests" "-v")))))) (home-page "https://github.com/fhs/python-hdf4") @@ -1372,14 +1322,11 @@ NetCDF files can also be read and modified. Python-HDF4 is a fork of (string-append "['" prefix "/lib" "']"))) #t)))))) (propagated-inputs - `(("python-six" ,python-six) - ("python-numpy" ,python-numpy))) + (list python-six python-numpy)) (inputs - `(("hdf5" ,hdf5-1.10))) + (list hdf5-1.10)) (native-inputs - `(("python-cython" ,python-cython) - ("python-pkgconfig" ,python-pkgconfig) - ("pkg-config" ,pkg-config))) + (list python-cython python-pkgconfig pkg-config)) (home-page "https://www.h5py.org/") (synopsis "Read and write HDF5 files from Python") (description @@ -1412,9 +1359,9 @@ concepts.") (substitute* "setup.py" ((", '-march=native'") ""))))))) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (native-inputs - `(("pybind11" ,pybind11))) + (list pybind11)) (home-page "https://github.com/nmslib/hnswlib") (synopsis "Fast approximate nearest neighbor search") (description "Hnswlib is a header-only C++ implementation of fast @@ -1439,16 +1386,10 @@ approximate nearest neighbor search with Python bindings.") (arguments `(#:test-target "pytest")) (propagated-inputs - `(("python-black" ,python-black) - ("python-language-server" - ,python-language-server) - ("python-toml" ,python-toml))) + (list python-black python-language-server python-toml)) (native-inputs - `(("python-flake8" ,python-flake8) - ("python-isort" ,python-isort) - ("python-mypy" ,python-mypy) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-flake8 python-isort python-mypy python-pytest + python-pytest-runner)) (home-page "https://github.com/rupert/pyls-black") (synopsis "Black plugin for the Python Language Server") (description "Black plugin for the Python Language Server.") @@ -1475,7 +1416,7 @@ approximate nearest neighbor search with Python bindings.") (setenv "HOME" "/tmp") (invoke "python" "sh.py" "test")))))) (native-inputs - `(("python-coverage" ,python-coverage))) + (list python-coverage)) (home-page "https://github.com/amoffat/sh") (synopsis "Python subprocess replacement") (description "This package provides a replacement for Python's @@ -1494,11 +1435,9 @@ approximate nearest neighbor search with Python bindings.") (base32 "0w0gi6jnch38hiygl62j4xkcirv4y3dcwrvxl9p7bsk6j27lzihs")))) (build-system python-build-system) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (native-inputs - `(("python-coveralls" ,python-coveralls) - ("python-cython" ,python-cython) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-coveralls python-cython python-pytest-cov)) (home-page "https://github.com/Unidata/cftime") (synopsis "Library for time handling") (description @@ -1528,14 +1467,11 @@ of the netcdf4 package before.") (setenv "HDF5_DIR" (assoc-ref inputs "hdf5")) #t))))) (native-inputs - `(("python-cython" ,python-cython))) + (list python-cython)) (propagated-inputs - `(("python-numpy" ,python-numpy) - ("python-cftime" ,python-cftime))) + (list python-numpy python-cftime)) (inputs - `(("netcdf" ,netcdf) - ("hdf4" ,hdf4) - ("hdf5" ,hdf5))) + (list netcdf hdf4 hdf5)) (home-page "https://github.com/Unidata/netcdf4-python") (synopsis "Python/numpy interface to the netCDF library") (description "Netcdf4-python is a Python interface to the netCDF C @@ -1571,10 +1507,9 @@ to users of that module.") (when tests? (invoke "pytest"))))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-lxml" ,python-lxml) - ("python-paramiko" ,python-paramiko))) + (list python-lxml python-paramiko)) (home-page "https://github.com/ncclient/ncclient") (synopsis "Python library for NETCONF clients") (description "@code{ncclient} is a Python library that facilitates @@ -1594,7 +1529,7 @@ protocol.") (base32 "1g0sgphss8hbi1rpl4avy1nmbixmy9v194xdbvkjgl90vzgy2q3r")))) (build-system python-build-system) (propagated-inputs - `(("python-boolean.py" ,python-boolean.py))) + (list python-boolean.py)) (home-page "https://github.com/nexB/license-expression") (synopsis "Apply boolean logic to license expressions") (description @@ -1624,9 +1559,9 @@ conventions and aliases in the same expression.") (setenv "MAGICK_HOME" (assoc-ref inputs "imagemagick")) (setenv "WAND_MAGICK_LIBRARY_SUFFIX" ".Q16")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (inputs - `(("imagemagick" ,imagemagick))) + (list imagemagick)) (home-page "https://docs.wand-py.org/") (synopsis "MagickWand API binding for Python") (description @@ -1648,7 +1583,7 @@ library.") (build-system python-build-system) (arguments '(#:test-target "check")) (native-inputs - `(("python-pbr" ,python-pbr))) + (list python-pbr)) (home-page "https://launchpad.net/pylockfile") (synopsis "Platform-independent file locking module") (description @@ -1672,7 +1607,7 @@ API for locking files.") "0snprxdnh3m45r3b0az4v0l28h90ycmfbybzla6xg1qviwv9w1ak")))) (build-system python-build-system) (inputs - `(("re2" ,re2))) + (list re2)) (home-page "https://github.com/facebook/pyre2") (synopsis "Python wrapper for RE2") (description "This package provides a Python extension that wraps Google's @@ -1738,8 +1673,7 @@ version identifier.") (base32 "1arnckykpkvv2qrp49l1k7q5mr5pisswl0rvdx98x8wsl1n361pk")))) (build-system python-build-system) (native-inputs - `(("python-attrs" ,python-attrs) - ("python-pytz" ,python-pytz))) + (list python-attrs python-pytz)) (home-page "https://github.com/irmen/Serpent") (synopsis "Serializer for literal Python expressions") (description @@ -1830,7 +1764,7 @@ Python 3 support.") (arguments `(#:tests? #f)) (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (home-page "https://pypi.org/project/setuptools/") (synopsis "Library designed to facilitate packaging Python projects") @@ -1865,11 +1799,9 @@ Python 3 support.") "1l8zmcnp9h8sp8hsw7b81djaa1a9yig0y7i4phh5pihqz1gdn7yi")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-pytest python-setuptools-scm)) (propagated-inputs - `(("python-toml" ,python-toml) - ("python-wheel" ,python-wheel))) + (list python-toml python-wheel)) (home-page "https://github.com/s0undt3ch/setuptools-declarative-requirements") (synopsis "File support for setuptools declarative setup.cfg") @@ -1906,7 +1838,7 @@ Python 3 support.") (arguments '(#:tests? #f)) ; The test suite requires network access. (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (home-page "https://bitbucket.org/emptypage/uniseg-python") (synopsis @@ -1994,9 +1926,6 @@ language. It aims to be fast.") `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (format #t "current working dir ~s~%" (getcwd)) - (setenv "PYTHONPATH" - (string-append ".:" (getenv "PYTHONPATH"))) ;; We must run the test suite module directly, as it ;; fails to define the 'tempdir' variable in scope for ;; the tests otherwise @@ -2048,19 +1977,18 @@ class.") (("\"can_player\\.py --help\"") "")) #t))))) (propagated-inputs - `(("python-aenum" ,python-aenum) - ("python-wrapt" ,python-wrapt))) - (native-inputs - `(("python-codecov" ,python-codecov) - ("python-coverage" ,python-coverage) - ("python-future" ,python-future) - ("python-hypothesis" ,python-hypothesis) - ("python-mock" ,python-mock) - ("python-pyserial" ,python-pyserial) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-runner" ,python-pytest-runner) - ("python-pytest-timeout" ,python-pytest-timeout))) + (list python-aenum python-wrapt)) + (native-inputs + (list python-codecov + python-coverage + python-future + python-hypothesis + python-mock + python-pyserial + python-pytest + python-pytest-cov + python-pytest-runner + python-pytest-timeout)) (home-page "https://github.com/hardbyte/python-can") (synopsis "Controller Area Network (CAN) interface module for Python") (description "This package defines the @code{can} module, which provides @@ -2096,12 +2024,9 @@ sending and receiving messages on a CAN bus.") (lambda _ (invoke "py.test" "-k" "not NetworkTests")))))) (propagated-inputs - `(("python-distlib" ,python-distlib) - ("python-packaging" ,python-packaging) - ("python-requests" ,python-requests))) + (list python-distlib python-packaging python-requests)) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (home-page "https://github.com/brettcannon/caniusepython3") (synopsis "Check for Python 3-incompatible Python libraries") (description "The @command{caniusepython3} command scans your project and @@ -2190,10 +2115,7 @@ bits instead of primitive data types like @code{char}, @code{int}, etc.") `(("sphinx" ,python-sphinx) ("texinfo" ,texinfo))) (propagated-inputs - `(("python-bitstruct" ,python-bitstruct) - ("python-can" ,python-can) - ("python-diskcache" ,python-diskcache) - ("python-textparser" ,python-textparser))) + (list python-bitstruct python-can python-diskcache python-textparser)) (home-page "https://github.com/eerimoq/cantools") (synopsis "Tools for the Controller Area Network (CAN) bus protocol") (description "This package includes Controller Area Network (CAN) related @@ -2225,7 +2147,7 @@ tools that can be used to: (arguments `(#:tests? #f)) (propagated-inputs - `(("python-humanfriendly" ,python-humanfriendly))) + (list python-humanfriendly)) (home-page "https://capturer.readthedocs.io") (synopsis "Capture stdout and stderr streams of the current process") (description @@ -2251,12 +2173,9 @@ for additional processing.") "1cagg06vfph864s6l5jb0zqliwxh647bki8j6lf4a4qrv40jnhs8")))) (build-system python-build-system) (propagated-inputs - `(("python-mock" ,python-mock) - ("python-nose" ,python-nose) - ("python-six" ,python-six) - ("python-unittest2" ,python-unittest2))) + (list python-mock python-nose python-six python-unittest2)) (native-inputs - `(("python-coverage" ,python-coverage))) + (list python-coverage)) (home-page "https://github.com/celery/case") (synopsis "Unittest utilities and convenience methods") (description @@ -2286,8 +2205,7 @@ some helpful Python 2 compatibility convenience methods.") (invoke "pytest" "-v" "-k" "not test_pylint_plugin" "verboselogs/tests.py")))))) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (home-page "https://verboselogs.readthedocs.io") (synopsis "Verbose logging level for Python's logging module") (description @@ -2314,7 +2232,7 @@ add the log levels NOTICE, SPAM, SUCCESS and VERBOSE.") `(;Tests require some updated modules #:tests? #f)) (propagated-inputs - `(("python-capturer" ,python-capturer))) + (list python-capturer)) (home-page "https://coloredlogs.readthedocs.io") (synopsis "Colored stream handler for Python's logging module") (description @@ -2361,22 +2279,18 @@ files are easily readable and they work nicely with version control systems.") "0vmxgn9wd3j80hp4gr5iq06jrl4gryz5zgfdd2ah30d12sfcfig0")))) (build-system python-build-system) (propagated-inputs - `(("python2-backports-functools-lru-cache" - ,python2-backports-functools-lru-cache) - ("python2-backports-shutil-get-terminal-size" - ,python2-backports-shutil-get-terminal-size) - ("python-cached-property" ,python-cached-property) - ("python-colorama" ,python-colorama) - ("python-imagesize" ,python-imagesize) - ("python-importlib-metadata" ,python-importlib-metadata) - ("python-lxml" ,python-lxml) - ("python-requests" ,python-requests) - ("python-six" ,python-six))) + (list python2-backports-functools-lru-cache + python2-backports-shutil-get-terminal-size + python-cached-property + python-colorama + python-imagesize + python-importlib-metadata + python-lxml + python-requests + python-six)) (native-inputs - `(("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-xdist" ,python-pytest-xdist) - ("python-responses" ,python-responses) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-pytest-cov python-pytest-xdist python-responses + python-setuptools-scm)) (home-page "https://github.com/webcomics/dosage") (synopsis "Comic strip downloader and archiver") (description "Dosage is designed to keep a local copy of specific webcomics and other @@ -2403,8 +2317,7 @@ downloaded, or download a strip for a particular date or index, if possible.") (lambda _ (invoke "pytest")))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-lxml" ,python-lxml))) ;used for the tests + (list python-pytest python-lxml)) ;used for the tests (home-page "https://bitbucket.org/openpyxl/et_xmlfile") (synopsis "Low memory implementation of @code{lxml.xmlfile}") (description "This Python library is based upon the @code{xmlfile} module @@ -2438,12 +2351,9 @@ of @code{xmlfile}.") (invoke "pytest")))))) (native-inputs ;; For the test suite. - `(("python-lxml" ,python-lxml) - ("python-pillow" ,python-pillow) - ("python-pytest" ,python-pytest))) + (list python-lxml python-pillow python-pytest)) (propagated-inputs - `(("python-et-xmlfile" ,python-et-xmlfile) - ("python-jdcal" ,python-jdcal))) + (list python-et-xmlfile python-jdcal)) (home-page "https://openpyxl.readthedocs.io") (synopsis "Python library to read/write Excel 2010 XLSX/XLSM files") (description "This Python library allows reading and writing to the Excel XLSX, XLSM, @@ -2466,27 +2376,44 @@ standard.") (sha256 (base32 "1qzjj8nwj4dn0mhq1j64f136afiqqb81lvqiikipz3g1g0b80lqx")))) - (arguments '(#:tests? #f))))) ; No test suite. + (arguments + `(#:python ,python-2 + #:tests? #f))))) ; No test suite. (define-public python-eventlet (package (name "python-eventlet") - (version "0.25.1") + (version "0.33.0") (source (origin (method url-fetch) (uri (pypi-uri "eventlet" version)) (sha256 (base32 - "1hgz8jq19wlz8vwqj900ry8cjv578nz4scc91mlc8944yid6573c")))) + "07qlyhcm0f28sxdizawvdf3d50m3hnbzz5kg3fjp7chvki44y540")))) (build-system python-build-system) (propagated-inputs - `(("python-dnspython" ,python-dnspython) - ("python-greenlet" ,python-greenlet) - ("python-monotonic" ,python-monotonic))) + (list python-dnspython python-greenlet python-monotonic python-six)) + (native-inputs + (list python-nose)) (arguments - ;; TODO: Requires unpackaged 'enum-compat'. - '(#:tests? #f)) + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'avoid-OSError + (lambda _ + ;; If eventlet tries to load greendns, an OSError is thrown when + ;; getprotobyname is called. Thankfully there is an environment + ;; variable to disable the greendns import, so use it: + (setenv "EVENTLET_NO_GREENDNS" "yes"))) + (add-after 'unpack 'delete-broken-tests + (lambda _ + (delete-file "tests/greendns_test.py") + (delete-file "tests/socket_test.py"))) + ;; See https://github.com/eventlet/eventlet/issues/562#issuecomment-714183009 + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "nosetests" "-v" "tests/"))))))) (home-page "https://eventlet.net") (synopsis "Concurrent networking library for Python") (description @@ -2497,7 +2424,7 @@ Coroutines ensure that the developer uses a blocking style of programming that is similar to threading, but provide the benefits of non-blocking I/O. The event dispatch is implicit, which means you can easily use @code{Eventlet} from the Python interpreter, or as a small part of a larger application.") - (license license:expat))) + (license license:expat))) (define-public python-sinfo (package @@ -2511,7 +2438,7 @@ from the Python interpreter, or as a small part of a larger application.") "0kdsp883mx0lfyykv0p12bvs203kdm3skb8bw5wf2pc7kb393sl1")))) (build-system python-build-system) (propagated-inputs - `(("python-stdlib-list" ,python-stdlib-list))) + (list python-stdlib-list)) (home-page "https://gitlab.com/joelostblom/session_info") (synopsis "Output module version information loaded in a Python session") (description "This package outputs version information for modules loaded @@ -2519,48 +2446,20 @@ in the current session, Python, and the OS.") (license license:bsd-3))) (define-public python-six - (package + (package/inherit python-six-bootstrap (name "python-six") - (version "1.14.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "six" version)) - (sha256 - (base32 - "02lw67hprv57hyg3cfy02y3ixjk3nzwc0dx3c4ynlvkfwkfdnsr3")))) - (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (invoke "py.test" "-v")))))) + (invoke "pytest" "-v")))))) (native-inputs - `(("python-pytest" ,python-pytest-bootstrap))) - (home-page "https://pypi.org/project/six/") - (synopsis "Python 2 and 3 compatibility utilities") - (description - "Six is a Python 2 and 3 compatibility library. It provides utility -functions for smoothing over the differences between the Python versions with -the goal of writing Python code that is compatible on both Python versions. -Six supports every Python version since 2.5. It is contained in only one -Python file, so it can be easily copied into your project.") - (license license:x11))) + `(("python-pytest" ,python-pytest-bootstrap))))) (define-public python2-six (package-with-python2 python-six)) -(define-public python-six-bootstrap - (package - (inherit python-six) - (name "python-six-bootstrap") - (native-inputs `()) - (arguments `(#:tests? #f)))) - -(define-public python2-six-bootstrap - (package-with-python2 python-six-bootstrap)) - (define-public python-schedule (package (name "python-schedule") @@ -2574,8 +2473,7 @@ Python file, so it can be easily copied into your project.") "0vplyjcbfrq50sphlwya749z8p2pcyi2nycw3518i0qpd9a6189i")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-mock" ,python-mock))) + (list python-pytest python-mock)) (home-page "https://github.com/dbader/schedule") (synopsis "Schedule periodic function calls in Python") (description @@ -2604,7 +2502,7 @@ human-friendly syntax.") (sha256 (base32 "0mmfvx4wqp8gkpv0kbih89zfs9njvmd3v4dxfqii62xddpxq0f1k")))) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (build-system python-build-system) (home-page "https://github.com/scour-project/scour") (synopsis "Scour is an SVG optimizer/cleaner written in Python") @@ -2627,7 +2525,7 @@ lossless but can be tweaked for more aggressive cleaning.") "1z9kqcwb8gfq2l6i42z624kxpd8692a0c8gw2x5bbm7n848w2mb3")))) (build-system python-build-system) (propagated-inputs - `(("python-html5lib" ,python-html5lib))) + (list python-html5lib)) (home-page "https://github.com/python-mechanize/mechanize") (synopsis "Stateful programmatic web browsing in Python") @@ -2654,7 +2552,7 @@ after Andy Lester’s Perl module WWW::Mechanize.") (arguments `(#:tests? #f)) (inputs - `(("alsa-lib" ,alsa-lib))) + (list alsa-lib)) (home-page "https://github.com/hamiltron/py-simple-audio") (synopsis "Simple, asynchronous audio playback for Python 3") @@ -2666,16 +2564,18 @@ audio playback capability for Python 3 on OSX, Windows, and Linux.") (define-public python-simplejson (package (name "python-simplejson") - (version "3.17.0") + (version "3.17.2") (source (origin (method url-fetch) (uri (pypi-uri "simplejson" version)) (sha256 (base32 - "108yf3252fy4ndqab7h46raksxfhcn113bzy2yd8369vidrjnjrb")))) + "0hc8nqwdlll4a9cr1k9msn5kmb6kmbjirpgvhjh254nr4sgwgv3m")))) (build-system python-build-system) - (home-page "http://simplejson.readthedocs.org/en/latest/") + (native-inputs + (list python-toml)) + (home-page "https://simplejson.readthedocs.io/en/latest") (synopsis "Json library for Python") (description @@ -2698,20 +2598,19 @@ Python 3.3+.") (define-public python-pyicu (package (name "python-pyicu") - (version "2.4.3") + (version "2.7.4") (source (origin (method url-fetch) (uri (pypi-uri "PyICU" version)) (sha256 (base32 - "075bw66b3w0nw6mc5k32fwmrhyrmq3d7da3q2mw212qfmm0pgjn0")))) + "0mkz1673qxldxs4mrqg9882xgmz5fhpia17yrsd6z8dfw8156rf0")))) (build-system python-build-system) (inputs - `(("icu4c" ,icu4c))) + (list icu4c)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-six" ,python-six))) + (list python-pytest python-six)) (home-page "https://github.com/ovalhub/pyicu") (synopsis "Python extension wrapping the ICU C++ API") (description @@ -2748,9 +2647,7 @@ Python 3.3+.") (invoke "dbus-run-session" "--" "nosetests" "-v" "tests/")) #t))))) (propagated-inputs - `(("python-pygobject" ,python-pygobject) - ("python-pycairo" ,python-pycairo) - ("python-pyatspi" ,python-pyatspi))) + (list python-pygobject python-pycairo python-pyatspi)) (native-inputs `(("python-nose" ,python-nose) ("gtk+" ,gtk+) @@ -2915,11 +2812,9 @@ backported for previous versions of Python from 2.4 to 3.3.") "0g3b6gsdwnm8dpkh2vn34q6dzxm9gl908ggyzcv31n9xbp3vv5pm")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six) - ("python-parse" ,python-parse))) + (list python-six python-parse)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-pytest python-pytest-runner)) (home-page "https://github.com/jenisys/parse_type") (synopsis "Extended parse module") (description @@ -2998,9 +2893,7 @@ existing ones.") (build-system python-build-system) (arguments '(#:tests? #false)) ; no tests included (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-mock python-pytest python-pytest-runner)) (home-page "https://github.com/ddmee/polling2") (synopsis "Polling utility with many configurable options") (description "Polling2 is a utility used to wait for a function to return @@ -3085,10 +2978,8 @@ software.") (base32 "10iqjzmya2h4sk765dlm1pbqypwlqyh8rw59a5m9i63d3klnz2mc")))) (build-system python-build-system) (native-inputs - `(("coverage" ,python-coverage) - ("pytest" ,python-pytest-astropy) - ("pytest-cov" ,python-pytest-cov) - ("setuptools-scm" ,python-setuptools-scm))) + (list python-coverage python-pytest-astropy python-pytest-cov + python-setuptools-scm)) (home-page "https://github.com/astropy/astropy-helpers") (synopsis "Utilities for building and installing packages in the Astropy ecosystem") @@ -3189,7 +3080,7 @@ server.") (propagated-inputs ;; Youtube-dl is a python package which is imported in the file ;; "backend_youtube_dl.py", therefore it needs to be propagated. - `(("youtube-dl" ,youtube-dl))) + (list youtube-dl)) (home-page "https://np1.github.io/pafy/") (synopsis "Retrieve YouTube content and metadata") (description @@ -3210,7 +3101,7 @@ server.") (arguments `(#:python ,python-2)) (native-inputs - `(("python2-unittest2" ,python2-unittest2))) + (list python2-unittest2)) (home-page "http://funcsigs.readthedocs.org") (synopsis "Python function signatures from PEP362") (description @@ -3229,14 +3120,14 @@ server.") (define-public python-py (package (name "python-py") - (version "1.8.1") + (version "1.10.0") (source (origin (method url-fetch) (uri (pypi-uri "py" version)) (sha256 (base32 - "1ajjazg3913n0sp3vjyva9c2qh5anx8ziryng935f89604a0h9sy")))) + "1lqvkqk3b440g9z82gqbzlzas84wrm6ir8kplzhzavmn2pd1pf11")))) (build-system python-build-system) (arguments ;; FIXME: "ImportError: 'test' module incorrectly imported from @@ -3245,7 +3136,7 @@ server.") ;; Is this module globally installed?" '(#:tests? #f)) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) (home-page "https://github.com/pytest-dev/py") (synopsis "Python library for parsing, I/O, instrospection, and logging") (description @@ -3253,18 +3144,6 @@ server.") code introspection, and logging.") (license license:expat))) -(define-public python-py-next - (package - (inherit python-py) - (version "1.10.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "py" version)) - (sha256 - (base32 - "1lqvkqk3b440g9z82gqbzlzas84wrm6ir8kplzhzavmn2pd1pf11")))))) - (define-public python2-py (package-with-python2 python-py)) @@ -3305,7 +3184,7 @@ code introspection, and logging.") (arguments `(#:tests? #f)) ;; Most tests seem to use the Internet. (propagated-inputs - `(("git" ,git))) ;; pbr actually uses the "git" binary. + (list git)) ;; pbr actually uses the "git" binary. (native-inputs `(("python-fixtures" ,python-fixtures-bootstrap) ;; discover, coverage, hacking, subunit @@ -3348,11 +3227,9 @@ from git information. (("hypothesis<5") "hypothesis")) #t))))) (native-inputs - `(("python-hypothesis" ,python-hypothesis) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-hypothesis python-pytest python-pytest-runner)) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (synopsis "Persistent data structures for Python") (description "Pyrsistent is a number of persistent collections (by some referred to as @@ -3424,12 +3301,10 @@ files.") (base32 "1bg2iw9l5dip0kbs00hajdk2v18wvhssbnq8hdf71278qf0wks5l")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-wcwidth" ,python-wcwidth) - ("python-configobj" ,python-configobj) - ("python-tabulate" ,python-tabulate) - ("python-terminaltables" ,python-terminaltables))) + (list python-wcwidth python-configobj python-tabulate + python-terminaltables)) (home-page "https://github.com/dbcli/cli_helpers") (synopsis "Helpers for building command-line apps") (description @@ -3459,14 +3334,12 @@ interfaces.") "cross-libc" "libc")))) (substitute* "src/click/_unicodefun.py" (("'locale'") - (string-append "'" glibc "/bin/locale'")))) - #t)) + (string-append "'" glibc "/bin/locale'")))))) (replace 'check (lambda _ - (setenv "PYTHONPATH" (string-append "./src:" (getenv "PYTHONPATH"))) (invoke "python" "-m" "pytest")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://palletsprojects.com/p/click/") (synopsis "Command line library for Python") (description @@ -3504,9 +3377,9 @@ with sensible defaults out of the box.") "09vbkik6kyn6yrqzl2r74vaybjk8kjykvi975hy3fsrm4gb17g54")))) (build-system python-build-system) (propagated-inputs - `(("python-click" ,python-click))) + (list python-click)) (native-inputs - `(("python-pytest-cov" ,python-pytest-cov))) + (list python-pytest-cov)) (home-page "https://github.com/mapbox/cligj") (synopsis "Click params for command line interfaces to GeoJSON") (description @@ -3555,7 +3428,7 @@ version numbers.") (lambda _ (invoke "pytest")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/phn/jdcal") (synopsis "Functions to convert between Julian dates Gregorian dates") (description "This Python library provides functions for converting @@ -3578,8 +3451,7 @@ between Julian dates and Gregorian dates.") "00v3689175aqzdscrxpffm712ylp8jvcpqdg51ca22ni6721p51l")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose) - ("python-nose-random" ,python-nose-random))) + (list python-nose python-nose-random)) (home-page "https://github.com/fzumstein/jsondiff") (synopsis "Compare JSON and JSON-like structures in Python") @@ -3602,18 +3474,15 @@ compare, diff, and patch JSON and JSON-like structures in Python.") '(#:phases (modify-phases %standard-phases (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - (setenv "PYTHONPATH" (string-append ".:" (getenv "PYTHONPATH"))) - (invoke "trial" "jsonschema")))))) + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (setenv "JSON_SCHEMA_TEST_SUITE" "json") + (invoke "trial" "jsonschema"))))))) (native-inputs `(("python-setuptools_scm" ,python-setuptools-scm) ("python-twisted" ,python-twisted))) (propagated-inputs - `(("python-attrs" ,python-attrs) - ("python-importlib-metadata" ,python-importlib-metadata) ;; python < 3.8 - ("python-pyrsistent" ,python-pyrsistent) - ("python-six" ,python-six))) + (list python-attrs python-pyrsistent python-six)) (home-page "https://github.com/Julian/jsonschema") (synopsis "Implementation of JSON Schema for Python") (description @@ -3633,7 +3502,7 @@ compare, diff, and patch JSON and JSON-like structures in Python.") "1lw28j9w9vxyigg7vkfkvi6ic9lgjkdnfvnxdr7pklslqvzmk2vm")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/keleshev/schema") (synopsis "Simple data validation library") (description @@ -3673,7 +3542,7 @@ something else) to Python data-types.") "1zakh6l0yjvwic9p0nkvmbidpnkygkxbigh2skmb5gccyrhbp7xg")))) (build-system python-build-system) (propagated-inputs - `(("python-chardet" ,python-chardet))) + (list python-chardet)) (home-page "https://github.com/fedora-infra/kitchen") (synopsis "Python API for snippets") (description "@code{kitchen} module provides a python API for all sorts of @@ -3746,12 +3615,9 @@ somewhat intelligible.") '(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" - (string-append "./build/lib:" - (getenv "PYTHONPATH"))) (invoke "pytest" "-vv")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/kmike/text-unidecode/") (synopsis "Decode Unicode data") (description @@ -3795,8 +3661,7 @@ memory usage and transliteration quality.") "")) (invoke "pytest" "-vv")))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-pytest python-pytest-cov)) (home-page "https://github.com/progrium/pyjwt") (synopsis "JSON Web Token implementation in Python") (description @@ -3844,13 +3709,13 @@ JavaScript-like message boxes. Types of dialog boxes include: (package (name "python-pympler") (home-page "https://pythonhosted.org/Pympler/") - (version "0.8") + (version "0.9") (source (origin (method url-fetch) (uri (pypi-uri "Pympler" version)) (sha256 (base32 - "08mrpnb6cv2nvfncvr8a9a8bpwhnasa924anapnjvnaw5jcd4k7p")))) + "0ivfw2k86nbw9ck9swidl4422w7bhjldxwj90a4sy5r1cbgygjzj")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases @@ -3879,14 +3744,14 @@ visualisation and class tracker statistics.") (define-public python-itsdangerous (package (name "python-itsdangerous") - (version "1.1.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (pypi-uri "itsdangerous" version)) (sha256 (base32 - "068zpbksq5q2z4dckh2k1zbcq43ay74ylqn77rni797j0wyh66rj")))) + "1w6gfb2zhbcmrfj6digwzw1z68w6zg1q87rm6la2m412zil4swly")))) (build-system python-build-system) (home-page "https://palletsprojects.com/p/itsdangerous/") (synopsis "Python library for passing data to/from untrusted environments") @@ -3895,9 +3760,6 @@ visualisation and class tracker statistics.") environments and back.") (license license:bsd-3))) -(define-public python2-itsdangerous - (package-with-python2 python-itsdangerous)) - (define-public python-pyyaml (package (name "python-pyyaml") @@ -3911,7 +3773,7 @@ environments and back.") "0pm440pmpvgv5rbbnm8hk4qga5a292kvlm1bh3x2nwr8pb5p8xv0")))) (build-system python-build-system) (inputs - `(("libyaml" ,libyaml))) + (list libyaml python-cython)) (home-page "https://pyyaml.org") (synopsis "YAML parser and emitter for Python") (description @@ -3937,8 +3799,7 @@ provides Python-specific tags that represent an arbitrary Python object.") "0wkskb2hb494v9gixqnf4bl972p4ibcmxdykzpwjlfa5picns4aj")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-case" ,python-case))) + (list python-pytest python-case)) (home-page "https://github.com/celery/vine") (synopsis "Promises for Python") (description @@ -3951,113 +3812,119 @@ e.g. filters, callbacks and errbacks can all be promises.") (define-public python-virtualenv (package (name "python-virtualenv") - (version "20.2.1") + (version "20.3.1") (source (origin (method url-fetch) (uri (pypi-uri "virtualenv" version)) (sha256 (base32 - "1rd6wmymsgv0cdsn50jwybcvbbslzym3mzffcjbl42l8br9cgap0")))) + "1nbhnpzswcf3lmzn5xabmfdd7ki8r2w2i37y6wml54di6qi1l48c")))) (build-system python-build-system) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ;; NOTE: guix lint remarks that "python-setuptools should probably not - ;; be an input at all". However, removing the input makes the build error: - ;; File "setup.py", line 4, in <module> - ;; raise RuntimeError("setuptools >= 41 required to build") - ("python-setuptools" ,python-setuptools) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-mock python-pytest python-setuptools-scm)) (propagated-inputs - `(("python-appdirs" ,python-appdirs) - ("python-distlib" ,python-distlib/next) - ("python-filelock" ,python-filelock) - ("python-six" ,python-six) - ("python-importlib-metadata" ,python-importlib-metadata))) + (list python-appdirs python-distlib python-filelock python-six)) (home-page "https://virtualenv.pypa.io/") (synopsis "Virtual Python environment builder") (description "Virtualenv is a tool to create isolated Python environments.") (license license:expat))) +(define-public python2-virtualenv + (let ((base (package-with-python2 (strip-python2-variant python-virtualenv)))) + (package + (inherit base) + (propagated-inputs + (modify-inputs (package-propagated-inputs base) + (prepend python2-contextlib2)))))) + (define-public python-markupsafe (package (name "python-markupsafe") - (version "1.1.1") + (version "2.0.1") (source (origin (method url-fetch) (uri (pypi-uri "MarkupSafe" version)) (sha256 (base32 - "0sqipg4fk7xbixqd8kq6rlkxj664d157bdwbh93farcphf92x1r9")))) + "02k2ynmqvvd0z0gakkf8s4idyb606r7zgga41jrkhqmigy06fk2r")))) (build-system python-build-system) (arguments - `(#:modules ((ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26) - (guix build utils) - (guix build python-build-system)) - #:phases (modify-phases %standard-phases + `(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ - (let ((cwd (getcwd)) - (libdir (find (cut string-prefix? "lib." <>) - (scandir "build")))) - (setenv "PYTHONPATH" - (string-append cwd "/build/" libdir ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-vv"))))))) - (native-inputs - `(("python-pytest" ,python-pytest))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv"))))))) + (native-inputs + (list python-pytest)) (home-page "https://github.com/mitsuhiko/markupsafe") (synopsis "XML/HTML/XHTML markup safe string implementation for Python") (description "Markupsafe provides an XML/HTML/XHTML markup safe string implementation for Python.") - (license license:bsd-3))) + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-markupsafe)))))) +;; Version 1.1.1 is the last to support Python 2. (define-public python2-markupsafe - (package-with-python2 python-markupsafe)) + (package + (inherit (package-with-python2 + (strip-python2-variant python-markupsafe))) + (version "1.1.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "MarkupSafe" version)) + (sha256 + (base32 + "0sqipg4fk7xbixqd8kq6rlkxj664d157bdwbh93farcphf92x1r9")))))) (define-public python-jinja2 (package (name "python-jinja2") - (version "2.11.2") + (version "3.0.1") (source (origin (method url-fetch) (uri (pypi-uri "Jinja2" version)) (sha256 (base32 - "1c1v3djnr0ymp5xpy1h3h60abcaqxdlm4wsqmls9rxby88av5al9")))) + "197ms1wimxql650245v63wkv04n8bicj549wfhp51bx68x5lhgvh")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases (replace 'check (lambda* (#:key tests? #:allow-other-keys) (if tests? - (begin - (setenv "PYTHONPATH" - (string-append "./build/lib:" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-vv")) - (format #t "test suite not run~%")) - #t))))) + (invoke "pytest" "-vv") + (format #t "test suite not run~%"))))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-markupsafe" ,python-markupsafe))) + (list python-markupsafe)) (home-page "http://jinja.pocoo.org/") (synopsis "Python template engine") (description "Jinja2 is a small but fast and easy to use stand-alone template engine written in pure Python.") - (license license:bsd-3))) + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-jinja2)))))) +;; Version 2.11.3 is the last to support Python 2. (define-public python2-jinja2 - (package-with-python2 python-jinja2)) + (package + (inherit (package-with-python2 + (strip-python2-variant python-jinja2))) + (version "2.11.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Jinja2" version)) + (sha256 + (base32 + "1iiklf3wns67y5lfcacxma5vxfpb7h2a67xbghs01s0avqrq9md6")))))) (define-public python-jinja2-time (package @@ -4072,8 +3939,7 @@ written in pure Python.") "0h0dr7cfpjnjj8bgl2vk9063a53649pn37wnlkd8hxjy656slkni")))) (build-system python-build-system) (propagated-inputs - `(("python-arrow" ,python-arrow) - ("python-jinja2" ,python-jinja2))) + (list python-arrow python-jinja2)) (home-page "https://github.com/hackebrot/jinja2-time") (synopsis "Jinja2 Extension for Dates and Times") @@ -4119,21 +3985,26 @@ logic-free templating system Mustache.") (define-public python-joblib (package (name "python-joblib") - (version "0.14.1") + (version "1.1.0") (source (origin (method url-fetch) (uri (pypi-uri "joblib" version)) (sha256 (base32 - "1j464w137w6s367gl697j1l63g52akydrxgv4czlck36ynjfwc06")))) + "0d8ypyhsw1bjr96zan9ms8wbvnzbjqxniq4vcszghcrps7ngqn21")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ (invoke "pytest" "-v" "joblib")))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "JOBLIB_MULTIPROCESSING" "0") + (invoke "pytest" "-v" "joblib" + ;; We disable this test to avoid having to depend on ipython/jupyter + "-k" "not test_parallel_call_cached_function_defined_in_jupyter"))))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://joblib.readthedocs.io/") (synopsis "Using Python functions as pipeline jobs") (description @@ -4143,8 +4014,17 @@ and lazy re-evaluation (memoize pattern), easy simple parallel computing logging and tracing of the execution.") (license license:bsd-3))) +;; Newer versions of joblib don't support Python 2. (define-public python2-joblib - (package-with-python2 python-joblib)) + (package + (inherit (package-with-python2 python-joblib)) + (version "0.14.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "joblib" version)) + (sha256 + (base32 + "1j464w137w6s367gl697j1l63g52akydrxgv4czlck36ynjfwc06")))))) (define-public python-daemon (package @@ -4169,15 +4049,15 @@ logging and tracing of the execution.") "skip_test_detaches_process_context")) #t))))) (propagated-inputs - `(("python-lockfile" ,python-lockfile))) + (list python-lockfile)) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-unittest2" ,python-unittest2) - ("python-testtools" ,python-testtools) - ("python-testscenarios" ,python-testscenarios) - ("python-twine" ,python-twine) - ("python-mock" ,python-mock) - ("python-docutils" ,python-docutils))) + (list python-coverage + python-unittest2 + python-testtools + python-testscenarios + python-twine + python-mock + python-docutils)) (home-page "https://pagure.io/python-daemon/") (synopsis "Python library for making a Unix daemon process") (description "Python-daemon is a library that assists a Python program to @@ -4211,11 +4091,11 @@ important tasks for becoming a daemon process: "1aycpc387wqz7h9w2p53qxn43qsh3m6by6ak4kkc66x9aprr63rz")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (native-inputs - `(;; For tests. - ("graphviz" ,graphviz) ;for 'dot' - ("python-nose" ,python-nose))) + (list ;; For tests. + graphviz ;for 'dot' + python-nose)) (home-page "https://github.com/c0fec0de/anytree") (synopsis "Lightweight tree data library") (description @@ -4226,14 +4106,14 @@ structure for Python.") (define-public python-docutils (package (name "python-docutils") - (version "0.16") + (version "0.17.1") (source (origin (method url-fetch) (uri (pypi-uri "docutils" version)) (sha256 (base32 - "1z3qliszqca9m719q3qhdkh0ghh90g500avzdgi7pl77x5h3mpn2")))) + "09gii36lp1bs26cpxqyfd20xahnpbrbjzcnba2xq08y3wk97frb8")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases @@ -4259,6 +4139,20 @@ via commands such as @command{rst2man}, as well as supporting Python code.") (define-public python2-docutils (package-with-python2 python-docutils)) +;; awscli refuses to be built with docutils < 0.16. +(define-public python-docutils-0.15 + (package + (inherit python-docutils) + (version "0.15") + (source (origin + (method url-fetch) + (uri (pypi-uri "docutils" version)) + (sha256 + (base32 + "0ja8q6mdj6xv62jjw3phv8j5nfqi5x8hnfy4pqfcjcgz4b34k8sl")))) + ;; tests contain Python 2 syntax. + (arguments '(#:tests? #false)))) + ;; python2-sphinx fails its test suite with newer versions. (define-public python2-docutils-0.14 (package @@ -4294,9 +4188,9 @@ via commands such as @command{rst2man}, as well as supporting Python code.") (invoke "nosetests" "-v")) #t))))) (propagated-inputs - `(("python-docutils" ,python-docutils))) + (list python-docutils)) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/twolfson/restructuredtext-lint") (synopsis "reStructuredText linter") (description "This package provides a linter for the reStructuredText @@ -4326,14 +4220,10 @@ format.") (invoke "pytest" "-v")) #t))))) (propagated-inputs - `(("python-chardet" ,python-chardet) - ("python-docutils" ,python-docutils) - ("python-restructuredtext-lint" ,python-restructuredtext-lint) - ("python-six" ,python-six) - ("python-stevedore" ,python-stevedore))) + (list python-chardet python-docutils python-restructuredtext-lint + python-six python-stevedore)) (native-inputs - `(("python-testtools" ,python-testtools) - ("python-pytest" ,python-pytest))) + (list python-testtools python-pytest)) (home-page "https://launchpad.net/doc8") (synopsis "Style checker for Sphinx (or other) RST documentation") @@ -4345,15 +4235,14 @@ text styles of documentation.") (define-public python-pygments (package (name "python-pygments") - (version "2.7.3") + (version "2.8.1") (source (origin (method url-fetch) (uri (pypi-uri "Pygments" version)) (sha256 (base32 - "05mps9r966r3dpqw6zrs1nlwjdf5y4960hl9m7abwb3qyfnarwyc")))) - (replacement python-pygments/fixed) + "153zyxigm879sk2n71lfv03y2pgxb7dl0dlsbwkz9aydxnkf2mi6")))) (build-system python-build-system) (arguments ;; FIXME: Tests require sphinx, which depends on this. @@ -4365,18 +4254,6 @@ text styles of documentation.") (license license:bsd-2) (properties `((python2-variant . ,(delay python2-pygments)))))) -(define python-pygments/fixed - (package - (inherit python-pygments) - (version "2.7.4") - (source - (origin - (method url-fetch) - (uri (pypi-uri "Pygments" version)) - (sha256 - (base32 - "0dy35ry5qa8dpklk4fkj9kfpw2qb4mh5ha9866kw30wf96dx0jfz")))))) - ;; Pygments 2.6 and later does not support Python 2. (define-public python2-pygments (let ((base (package-with-python2 (strip-python2-variant python-pygments)))) @@ -4403,7 +4280,7 @@ text styles of documentation.") "0cz14clcc9z4pn79ll8hp3xzgsrfjscak5zfsvlgrz6ngkkmgjma")))) (build-system python-build-system) (propagated-inputs - `(("python-pygments" ,python-pygments))) + (list python-pygments)) (home-page "https://github.com/liluo/pygments-github-lexers") (synopsis "Pygments Github custom lexers") (description "This package installs Github custom lexers to Pygments.") @@ -4472,13 +4349,10 @@ software version simply.") (when tests? (invoke "pytest"))))))) (propagated-inputs - `(("python-wrapt" ,python-wrapt))) + (list python-wrapt)) (native-inputs - `(("python-bumpversion" ,python-bumpversion) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-sphinx" ,python-sphinx) - ("python-tox" ,python-tox))) + (list python-bumpversion python-pytest python-pytest-cov + python-sphinx python-tox)) (home-page "https://github.com/tantale/deprecated") (synopsis "Python decorator to deprecate classes, functions or methods") (description "The @code{deprecated} decorator provides a convenient way to deprecate @@ -4510,13 +4384,10 @@ to deprecate classes, functions or methods.") (invoke "pytest")) #t))))) (propagated-inputs - `(("python-cryptography" ,python-cryptography) - ("python-deprecated" ,python-deprecated) - ("python-pyjwt" ,python-pyjwt) - ("python-requests" ,python-requests))) + (list python-cryptography python-deprecated python-pyjwt + python-requests)) (native-inputs - `(("python-httpretty" ,python-httpretty) - ("python-pytest" ,python-pytest))) + (list python-httpretty python-pytest)) (home-page "https://pygithub.readthedocs.io/en/latest/") (synopsis "Python library for the GitHub API") (description "This library allows managing GitHub resources such as @@ -4537,8 +4408,7 @@ using version 3 of the GitHub application programming interface (API).") "1w0arpj1sm7vh29nrbnca4pnp8sx42l07r17inwqcjjf9bhng66x")))) (build-system python-build-system) (propagated-inputs - `(("python-invoke" ,python-invoke) - ("python-pygithub" ,python-pygithub))) + (list python-invoke python-pygithub)) (home-page "https://github.com/robotframework/rellu") (synopsis "Utilities to create PyPI releases") (description "This collection of utilities contains tooling and templates @@ -4576,18 +4446,17 @@ ecosystem, but can naturally be used also by other projects.") (copy-recursively "doc/libraries" (string-append doc "/libraries"))))) (replace 'check - (lambda* (#:key inputs tests? #:allow-other-keys) - (when tests? - ;; Some tests require timezone data. Otherwise, they - ;; look up /etc/localtime, which doesn't exist, and - ;; fail with: - ;; - ;; OverflowError: mktime argument out of range - (setenv "TZDIR" - (string-append (assoc-ref inputs "tzdata") - "/share/zoneinfo")) - (setenv "TZ" "Europe/Paris") - (invoke "python" "utest/run.py"))))))) + (lambda* (#:key inputs #:allow-other-keys) + ;; Some tests require timezone data. Otherwise, they + ;; look up /etc/localtime, which doesn't exist, and fail + ;; with: + ;; + ;; OverflowError: mktime argument out of range + (setenv "TZDIR" + (search-input-directory inputs "share/zoneinfo")) + (setenv "TZ" "Europe/Paris") + + (invoke "python" "utest/run.py")))))) (native-inputs `(("python-docutils" ,python-docutils) ("python-jsonschema" ,python-jsonschema) @@ -4603,6 +4472,48 @@ acceptance testing, acceptance test driven development (ATDD), and robotic process automation (RPA).") (license license:asl2.0))) +(define-public python-robotframework-datadriver + (package + (name "python-robotframework-datadriver") + (version "1.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "robotframework-datadriver" version)) + (sha256 + (base32 "1kv6h47850gdqr8azknkh81z7hw6yz5pjn53mkn71ly4szw4pqb7")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-readme-file-name + (lambda _ + (rename-file "Readme.rst" "README.rst"))) + (add-before 'check 'skip-problematic-tests + (lambda _ + ;; The test file 'tab-csv-file-name.tsv' contains special + ;; characters for which there is no locale in the build + ;; environment, causing one test to fail. + (delete-file-recursively "atest/TestCases/csv_reader_config"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-directory-excursion "atest" + (invoke "sh" "run_atest.sh")))))))) + (native-inputs (list python-docutils + python-robotframework-stacktrace)) + (propagated-inputs (list python-openpyxl + python-pandas + python-pygments + python-robotframework)) + (home-page "https://github.com/Snooz82/robotframework-datadriver") + (synopsis "Data-driven test extension for Robot Framework") + (description "DataDriver is a data-driven extension for Robot Framework. +DataDriver uses the Listener Interface of Robot Framework to create new test +cases based on a data file that contains the test data. DataDriver supports +data files in the CSV, XLS or XLSX formats.") + (license license:asl2.0))) + (define-public python-robotframework-lint ;; There is no properly tagged release; the commit below seems to correspond ;; to the 0.9 stable release available from PyPI. The tests are not @@ -4633,13 +4544,42 @@ process automation (RPA).") (invoke "python" "-m" "robot" "-A" "tests/conf/default.args" "tests")))))) (propagated-inputs - `(("python-robotframework" ,python-robotframework))) + (list python-robotframework)) (home-page "https://github.com/boakley/robotframework-lint/") (synopsis "Static analysis tool (linter) for Robot Framework") (description "This package provides the @code{rflint} command-line utility, a static analysis tool (linter) for Robot Framework source files.") (license license:asl2.0)))) +(define-public python-robotframework-stacktrace + (package + (name "python-robotframework-stacktrace") + (version "0.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "robotframework-stacktrace" version)) + (sha256 + (base32 "19gnwr7da1zz9clhwsmvqfjf02d195i61lzpq4253dcsgrpb6v79")))) + (build-system python-build-system) + (arguments + ;; The test suite fails (see: + ;; https://github.com/MarketSquare/robotframework-stacktrace/issues/4). + `(#:tests? #f + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-directory-excursion "tests" + (invoke "python" "-m" "robot" ".")))))))) + (propagated-inputs (list python-robotframework)) + (home-page "https://github.com/MarketSquare/robotframework-stacktrace") + (synopsis "Robot Framework listener to print a stack trace on error") + (description "StackTrace is a Robot Framework listener that prints a stack +trace directly to the terminal to ease debugging.") + (license license:asl2.0))) + (define-public python-robotframework-sshlibrary (package (name "python-robotframework-sshlibrary") @@ -4677,17 +4617,15 @@ utility, a static analysis tool (linter) for Robot Framework source files.") (delete-file "utest/test_scp.py") (invoke "python" "utest/run.py"))))))) (propagated-inputs - `(("python-robotframework" ,python-robotframework) - ("python-paramiko" ,python-paramiko) - ("python-scp" ,python-scp))) + (list python-robotframework python-paramiko python-scp)) (native-inputs - `(("openssh" ,openssh) - ("which" ,which) - ;; To generate the documentation - ("python-docutils" ,python-docutils) - ("python-invoke" ,python-invoke) - ("python-pygments" ,python-pygments) - ("python-rellu" ,python-rellu))) + (list openssh + which + ;; To generate the documentation + python-docutils + python-invoke + python-pygments + python-rellu)) (outputs '("out" "doc")) (home-page "https://github.com/robotframework/SSHLibrary") (synopsis "Robot Framework library for SSH and SFTP") @@ -4723,10 +4661,8 @@ for SSH and SFTP. It has the following main usages: (when tests? (invoke "utest/run.py"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-mockito" ,python-pytest-mockito) - ("python-robotframework" ,python-robotframework))) + (list python-pytest python-pytest-cov python-pytest-mockito + python-robotframework)) (home-page "https://github.com/robotframework/PythonLibCore") (synopsis "Robot Framework Python library tools") (description "PythonLibCore provides tools for creating larger test @@ -4752,10 +4688,8 @@ library APIs.") ;; XXX: Tests require ungoogled-chromium, but the chromium module would ;; introduce a cycle if imported here. (propagated-inputs - `(("python-robotframework" ,python-robotframework) - ("python-robotframework-pythonlibcore" - ,python-robotframework-pythonlibcore) - ("python-selenium" ,python-selenium))) + (list python-robotframework python-robotframework-pythonlibcore + python-selenium)) (home-page "https://github.com/robotframework/SeleniumLibrary") (synopsis "Web testing library for Robot Framework") (description "SeleniumLibrary is a web testing library for Robot Framework @@ -4778,9 +4712,7 @@ that utilizes the Selenium tool internally.") ;; their CI with Nix (!). `(#:tests? #f)) (propagated-inputs - `(("python-robotframework" ,python-robotframework) - ("python-robotframework-seleniumlibrary" - ,python-robotframework-seleniumlibrary))) + (list python-robotframework python-robotframework-seleniumlibrary)) (home-page "https://github.com/MarketSquare/robotframework-seleniumscreenshots") (synopsis "Robot Framework library for annotating and cropping screenshots") (description "The SeleniumScreenshots library for Robot Framework provides @@ -4823,7 +4755,7 @@ outside the standard library.") (arguments '(#:tests? #f)) ;tests require an SSH server (propagated-inputs - `(("python-paramiko" ,python-paramiko))) + (list python-paramiko)) (home-page "https://github.com/jbardin/scp.py") (synopsis "SCP protocol module for Python and Paramiko") (description "The scp module extends the Paramiko library to send and @@ -4843,10 +4775,9 @@ receive files via the SCP1 protocol, as implemented by the OpenSSH (base32 "0pqsfqqx8h0pq21k8l3k62kznrgaj2ala93c64s4d9rpbr4mgkd2")))) (build-system python-build-system) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-six" ,python-six))) + (list python-dateutil python-six)) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) ;; Test would require path.py, which would introduce a cyclic dependence. (arguments `(#:tests? #f)) ;; Note: As of version 1.7 the documentation is not worth building. @@ -4876,8 +4807,7 @@ augment the changelog, but it can be used for other documents, too.") "1h4gwmcfn84kkqh83km1vfz8sc5kr2g4gzgzmr8gz704jmqiv7nq")))) (build-system python-build-system) (propagated-inputs - `(("python-cryptography" ,python-cryptography) - ("python-ecdsa" ,python-ecdsa))) + (list python-cryptography python-ecdsa)) (synopsis "OpenSSH public key parser") (description "This package provides a library for parsing and validating OpenSSH @@ -4905,8 +4835,7 @@ public key files.") #t)))) (build-system python-build-system) (propagated-inputs - `(("python-pytz" ,python-pytz) - ("python-six" ,python-six))) + (list python-pytz python-six)) (home-page "https://github.com/getpelican/feedgenerator") (synopsis "Standalone version of Django's Atom/RSS feed generator") @@ -4931,10 +4860,9 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.") "1gb0fsamxndhplx25v8m0b3k7aknzy454fpa0qsqsqnv6c3igv3v")))) (build-system python-build-system) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (propagated-inputs - `(("python-ujson" ,python-ujson))) + (list python-ujson)) (home-page "https://github.com/python-lsp/python-lsp-jsonrpc") (synopsis "JSON RPC 2.0 server library") (description @@ -4985,10 +4913,9 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.") (replace 'check (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-mock" ,python-pytest-mock))) + (list python-pytest python-pytest-mock)) (propagated-inputs - `(("python-typing-extensions" ,python-typing-extensions))) + (list python-typing-extensions)) (home-page "https://github.com/samuelcolvin/pydantic") (synopsis "Python data validation and settings management") (description @@ -5009,8 +4936,7 @@ errors when data is invalid.") "1m1xv9clkg9lgzyza6dnj359z04vh5g0h49nhzghv7lg81gchhap")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six) - ("python-snowballstemmer" ,python-snowballstemmer))) + (list python-six python-snowballstemmer)) (home-page "https://github.com/PyCQA/pydocstyle/") (synopsis "Python docstring style checker") @@ -5042,30 +4968,30 @@ Server (PLS).") (invoke "python" "-m" "pytest" "-k" "not test_pyqt_completion")))))) (propagated-inputs - `(("python-autopep8" ,python-autopep8) - ("python-configparser" ,python-configparser) - ("python-pydocstyle" ,python-pydocstyle) - ("python-flake8" ,python-flake8) - ("python-future" ,python-future) - ("python-jedi" ,python-jedi) - ("python-lsp-jsonrpc" ,python-lsp-jsonrpc) - ("python-pluggy" ,python-pluggy) - ("python-pycodestyle" ,python-pycodestyle) - ("python-pyflakes" ,python-pyflakes) - ("python-rope" ,python-rope) - ("python-ujson" ,python-ujson) - ("python-yapf" ,python-yapf))) - (native-inputs - `(("python-coverage" ,python-coverage) - ("python-flaky" ,python-flaky) - ("python-matplotlib" ,python-matplotlib) - ("python-mock" ,python-mock) - ("python-numpy" ,python-numpy) - ("python-pandas" ,python-pandas) - ("python-pylint" ,python-pylint) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-versioneer" ,python-versioneer))) + (list python-autopep8 + python-configparser + python-pydocstyle + python-flake8 + python-future + python-jedi + python-lsp-jsonrpc + python-pluggy + python-pycodestyle + python-pyflakes + python-rope + python-ujson + python-yapf)) + (native-inputs + (list python-coverage + python-flaky + python-matplotlib + python-mock + python-numpy + python-pandas + python-pylint + python-pytest + python-pytest-cov + python-versioneer)) (home-page "https://github.com/palantir/python-language-server") (synopsis "Python implementation of the Language Server Protocol") (description @@ -5147,19 +5073,26 @@ matching of file paths.") (substitute* "tests/test_black.py" (("( *)def test_python38" match indent) (string-append indent "@unittest.skip(\"guix\")\n" match))) - #t))))) - (propagated-inputs - `(("python-click" ,python-click) - ("python-attrs" ,python-attrs) - ("python-appdirs" ,python-appdirs) - ("python-pathspec" ,python-pathspec) - ("python-mypy-extensions" ,python-mypy-extensions) - ("python-regex" ,python-regex) - ("python-toml" ,python-toml) - ("python-typed-ast" ,python-typed-ast) - ("python-typing-extensions" ,python-typing-extensions))) - (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + #t)) + ;; Remove blackd, because it depends on python-aiohttp and + ;; python-aiohttp-cors. + (add-after 'unpack 'remove-entrypoint + (lambda _ + (substitute* "setup.py" + (("\\s*\"blackd=blackd:patched_main \\[d\\]\",\n") "") + (("\"blackd\", ") ""))))))) + (propagated-inputs + (list python-click + python-attrs + python-appdirs + python-pathspec + python-mypy-extensions + python-regex + python-toml + python-typed-ast + python-typing-extensions)) + (native-inputs + (list python-setuptools-scm)) (home-page "https://github.com/ambv/black") (synopsis "The uncompromising code formatter") (description "Black is the uncompromising Python code formatter.") @@ -5178,7 +5111,7 @@ matching of file paths.") "1drp5p697ni1xn5y2lbjpalgpkzy2i4cyxjj5pk4dxr0vk97dd7i")))) (build-system python-build-system) (propagated-inputs - `(("python-black" ,python-black))) + (list python-black)) (home-page "https://github.com/wbolster/black-macchiato") (synopsis "Partial @code{python-black} formatting") (description @@ -5221,18 +5154,18 @@ interested parties to subscribe to events, or \"signals\".") "0g1sbzlz5mfc70gwgnj3lz4kf4psdjl96n6ywklv8z817m1khxdd")))) (build-system python-build-system) (inputs - `(("python-blinker" ,python-blinker) - ("python-dateutil" ,python-dateutil) - ;; Ignoring `guix lint` warning as python-docutils is used to support - ;; reStructuredText processing at runtime. - ("python-docutils" ,python-docutils) - ("python-feedgenerator" ,python-feedgenerator) - ("python-jinja2" ,python-jinja2) - ("python-markdown" ,python-markdown) - ("python-pygments" ,python-pygments) - ("python-pytz" ,python-pytz) - ("python-rich" ,python-rich) - ("python-unidecode" ,python-unidecode))) + (list python-blinker + python-dateutil + ;; Ignoring `guix lint` warning as python-docutils is used to support + ;; reStructuredText processing at runtime. + python-docutils + python-feedgenerator + python-jinja2 + python-markdown + python-pygments + python-pytz + python-rich + python-unidecode)) (home-page "https://blog.getpelican.com/") (arguments `(;; XXX Requires a lot more packages to do unit tests :P @@ -5280,38 +5213,41 @@ provides additional functionality on the produced Mallard documents.") (define-public python-cython (package (name "python-cython") - (version "0.29.22") + (version "0.29.24") (source (origin (method url-fetch) (uri (pypi-uri "Cython" version)) (sha256 - (base32 "01jl3544qwsi8lp6anbl55566xqkjd53x452i7m6gnfilv3q6syz")))) + (base32 "0hw4gs18rh4slij1fg252argxhraypld9apbqbl60230qc3lvw6d")))) (build-system python-build-system) ;; we need the full python package and not just the python-wrapper ;; because we need libpython3.3m.so (inputs - `(("python" ,python))) + (list python)) (arguments `(#:phases (modify-phases %standard-phases (add-before 'check 'set-HOME ;; some tests require access to "$HOME/.cython" - (lambda _ (setenv "HOME" "/tmp") #t)) + (lambda _ (setenv "HOME" "/tmp"))) (replace 'check - (lambda _ + (lambda* (#:key tests? #:allow-other-keys) ;; Disable compiler optimizations to greatly reduce the running ;; time of the test suite. (setenv "CFLAGS" "-O0") - (invoke "python" "runtests.py" "-vv" - "-j" (number->string (parallel-job-count)) - ;; XXX: On 32-bit architectures, running the parallel tests - ;; fails on many-core systems, see - ;; <https://github.com/cython/cython/issues/2807>. - ,@(if (not (target-64bit?)) - '("-x" "run.parallel") - '()))))))) + (when tests? + (invoke "python" "runtests.py" "-vv" + "-j" (number->string (parallel-job-count)) + ;; XXX: On 32-bit architectures, running the parallel tests + ;; fails on many-core systems, see + ;; <https://github.com/cython/cython/issues/2807>. + ,@(if (not (target-64bit?)) + '("-x" "run.parallel") + '()) + ;; This test fails when running on 24 cores. + "-x" "cpp_stl_conversion"))))))) (home-page "https://cython.org/") (synopsis "C extensions for Python") (description "Cython is an optimising static compiler for both the Python @@ -5356,10 +5292,10 @@ writing C extensions for Python as easy as Python itself.") ;; NOTE: when upgrading numpy please make sure that python-pandas and ;; python-scipy still build, as these three packages are often used together. -(define-public python-numpy +(define-public python-numpy-next (package (name "python-numpy") - (version "1.17.3") + (version "1.21.3") (source (origin (method url-fetch) @@ -5368,38 +5304,29 @@ writing C extensions for Python as easy as Python itself.") version "/numpy-" version ".tar.gz")) (sha256 (base32 - "1ak9dmjja0q90a7fsxli51ypcwssh8c4pb6f8wkrsnf2xgdk6dy9")))) + "0s6hy8828yr7fcjiwnym4l8lrknr21gqfkaiawsf86n0hd0a5fyh")))) (build-system python-build-system) (inputs - `(("openblas" ,openblas))) + (list openblas)) (native-inputs - `(("python-cython" ,python-cython) - ("python-pytest" ,python-pytest) - ("gfortran" ,gfortran))) + (list python-cython python-hypothesis python-pytest + python-pytest-xdist gfortran)) (arguments `(#:phases (modify-phases %standard-phases - (add-before 'build 'configure-blas-lapack + (add-before 'build 'configure-blas (lambda* (#:key inputs #:allow-other-keys) (call-with-output-file "site.cfg" (lambda (port) (format port - "[openblas] + "\ +[openblas] libraries = openblas library_dirs = ~a/lib include_dirs = ~a/include - -# backslash-n to make emacs happy -\n[lapack] -lapack_libs = lapack -library_dirs = ~a/lib -include_dirs = ~a/include " (assoc-ref inputs "openblas") - (assoc-ref inputs "openblas") - (assoc-ref inputs "lapack") - (assoc-ref inputs "lapack")))) - #t)) + (assoc-ref inputs "openblas")))))) (add-before 'build 'fix-executable-paths (lambda* (#:key inputs #:allow-other-keys) ;; Make /gnu/store/...-bash-.../bin/sh the default shell, @@ -5410,21 +5337,17 @@ include_dirs = ~a/include ;; Use "gcc" executable, not "cc". (substitute* "numpy/distutils/system_info.py" (("c = distutils\\.ccompiler\\.new_compiler\\(\\)") - "c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')")) - #t)) - ;; Tests can only be run after the library has been installed and not - ;; within the source directory. - (delete 'check) - (add-after 'install 'check - (lambda* (#:key outputs inputs #:allow-other-keys) - ;; Make installed package available for running the tests - (add-installed-pythonpath inputs outputs) - ;; Make sure "f2py" etc is found. - (setenv "PATH" (string-append (assoc-ref outputs "out") "/bin" - ":" (getenv "PATH"))) - (with-directory-excursion "/tmp" - (invoke "python" "-c" - "import numpy; numpy.test(verbose=2)"))))))) + "c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')")))) + (replace 'check + (lambda* (#:key tests? outputs inputs #:allow-other-keys) + (when tests? + ;; Make installed package available for running the tests. + (add-installed-pythonpath inputs outputs) + ;; Make sure "f2py" etc is found. + (setenv "PATH" (string-append (assoc-ref outputs "out") "/bin" + ":" (getenv "PATH"))) + (invoke "./runtests.py" + "-j" (number->string (parallel-job-count))))))))) (home-page "https://numpy.org") (synopsis "Fundamental package for scientific computing with Python") (description "NumPy is the fundamental package for scientific computing @@ -5438,7 +5361,7 @@ capabilities.") ;; Numpy 1.16.x are the last versions that support Python 2. (define-public python2-numpy (let ((numpy (package-with-python2 - (strip-python2-variant python-numpy)))) + (strip-python2-variant python-numpy-next)))) (package (inherit numpy) (version "1.16.5") @@ -5449,7 +5372,40 @@ capabilities.") version "/numpy-" version ".tar.gz")) (sha256 (base32 - "0lg1cycxzi4rvvrd5zxinpdz0ni792fpx6xjd75z1923zcac8qrb"))))))) + "0lg1cycxzi4rvvrd5zxinpdz0ni792fpx6xjd75z1923zcac8qrb")))) + (arguments + (substitute-keyword-arguments (package-arguments numpy) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'delete-failing-test + (lambda _ + ;; There's just one failing test here. + (delete-file "numpy/linalg/tests/test_linalg.py") + ;; ...and this one depends on the previous one. + (delete-file "numpy/matrixlib/tests/test_matrix_linalg.py"))))))) + (native-inputs + (list python2-cython python2-pytest gfortran))))) + +;; Needed by python-numba, see https://github.com/numba/numba/issues/7176 +(define-public python-numpy-1.20 + (package + (inherit python-numpy-next) + (version "1.20.3") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/numpy/numpy/releases/download/v" + version "/numpy-" version ".tar.gz")) + (sha256 + (base32 + "140zq9snx0di4id4g97vaw9zz8x2rfla5lp3a70j666f5030yd5p")))) + ;; 92 tests fail, many of them because parts of the temp file name + ;; accidentally ends up in a comparison. + (arguments + (substitute-keyword-arguments (package-arguments python-numpy-next) + ((#:tests? _ #t) #f))))) + +(define-public python-numpy python-numpy-1.20) ;; NOTE: NumPy 1.8 is packaged only for Python 2 because it is of ;; interest only for legacy code going back to NumPy's predecessor @@ -5471,23 +5427,20 @@ capabilities.") (substitute-keyword-arguments (package-arguments python2-numpy) ((#:phases phases) `(modify-phases ,phases - (replace 'configure-blas-lapack + (replace 'configure-blas (lambda* (#:key inputs #:allow-other-keys) (call-with-output-file "site.cfg" (lambda (port) (format port "[openblas] -libraries = openblas,lapack -library_dirs = ~a/lib:~a/lib -include_dirs = ~a/include:~a/include +libraries = openblas +library_dirs = ~a/lib +include_dirs = ~a/include " (assoc-ref inputs "openblas") - (assoc-ref inputs "lapack") - (assoc-ref inputs "openblas") - (assoc-ref inputs "lapack")))) - #t)))))) + (assoc-ref inputs "openblas")))))))))) (native-inputs - `(("python2-nose" ,python2-nose))) + (list python2-nose)) (description "NumPy is the fundamental package for scientific computing with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ @@ -5531,28 +5484,24 @@ objects.") "05qjycgxp3p2f9n6lmic68sxmsyvgnnlyl4z9w7dl9s56jphaiix")))) (build-system python-build-system) (propagated-inputs - `(("python-networkx" ,python-networkx) - ("python-numpy" ,python-numpy))) + (list python-networkx python-numpy)) (home-page "https://github.com/gtaylor/python-colormath") (synopsis "Color math and conversion library") (description "This is a Python library for color math and conversions.") (license license:bsd-3))) -(define-public python2-colormath - (package-with-python2 python-colormath)) - (define-public python-sparse (package (name "python-sparse") - (version "0.12.0") + (version "0.13.0") (source (origin (method url-fetch) (uri (pypi-uri "sparse" version)) (sha256 (base32 - "05lmzckv69cvxavhdr36k803bgr5dl04cppglid1l880xswc759c")))) + "05ar1lhq1yy4nb78s7vpb1wz4ac4kj0r4lrd7yrf23kpmaacjpb8")))) (build-system python-build-system) (arguments `(#:phases @@ -5562,14 +5511,10 @@ objects.") (when tests? (invoke "python" "-m" "pytest" "-v"))))))) (propagated-inputs - `(("python-numba" ,python-numba) - ("python-numpy" ,python-numpy) - ("python-scipy" ,python-scipy))) + (list python-numba python-numpy python-scipy)) (native-inputs - `(("python-dask" ,python-dask) - ("python-pytest" ,python-pytest) - ("python-pytest-black" ,python-pytest-black) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-dask python-pytest python-pytest-black + python-pytest-cov)) (home-page "https://github.com/pydata/sparse/") (synopsis "Library for multi-dimensional sparse arrays") (description @@ -5605,9 +5550,9 @@ depends on @code{scipy.sparse} for some computations.") (replace 'check (lambda _ (invoke "nosetests" "-v")))))) (propagated-inputs - `(("python-colormath" ,python-colormath))) + (list python-colormath)) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/jsvine/spectra") (synopsis "Color scales and color conversion") (description @@ -5624,9 +5569,6 @@ color scales, and color space conversion easy. It has support for: @end enumerate\n") (license license:expat))) -(define-public python2-spectra - (package-with-python2 python-spectra)) - (define-public python-pyspnego (package (name "python-pyspnego") @@ -5649,12 +5591,9 @@ color scales, and color space conversion easy. It has support for: (when tests? (invoke "pytest"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-mock" ,python-pytest-mock))) + (list python-pytest python-pytest-mock)) (propagated-inputs - `(("python-cryptography" ,python-cryptography) - ("python-gssapi" ,python-gssapi) - ("python-ruamel.yaml" ,python-ruamel.yaml))) + (list python-cryptography python-gssapi python-ruamel.yaml)) (home-page "https://github.com/jborean93/pyspnego") (synopsis "Python SPNEGO library") (description "The @code{pyspnego} Python library handles Negotiate, NTLM, @@ -5675,16 +5614,16 @@ readable format.") ("pkg-config" ,pkg-config) ("python-sphinx" ,python-sphinx) ("python-numpydoc" ,python-numpydoc) - ("texlive" ,(texlive-union (list texlive-fonts-cm-super + ("texlive" ,(texlive-updmap.cfg (list texlive-cm-super texlive-fonts-ec - texlive-generic-ifxetex + texlive-generic-iftex texlive-pdftex - texlive-amsfonts/patched + texlive-amsfonts texlive-latex-capt-of texlive-latex-cmap texlive-latex-environ texlive-latex-eqparbox - texlive-latex-etoolbox + texlive-etoolbox texlive-latex-expdlist texlive-latex-fancyhdr texlive-latex-fancyvrb @@ -5693,11 +5632,11 @@ readable format.") texlive-latex-framed texlive-latex-geometry texlive-latex-graphics - texlive-latex-hyperref + texlive-hyperref texlive-latex-mdwtools texlive-latex-multirow texlive-latex-needspace - texlive-latex-oberdiek + texlive-oberdiek texlive-latex-parskip texlive-latex-preview texlive-latex-tabulary @@ -5706,7 +5645,7 @@ readable format.") texlive-latex-trimspaces texlive-latex-ucs texlive-latex-upquote - texlive-latex-url + texlive-url texlive-latex-varwidth texlive-latex-wrapfig))) ("texinfo" ,texinfo) @@ -5741,7 +5680,7 @@ readable format.") (sphinx-theme-checkout (assoc-ref inputs scipy-sphinx-theme)) (pyver ,(string-append "PYVER="))) - ;; FIXME: this is needed to for texlive-union to generate + ;; FIXME: this is needed to for texlive-updmap.cfg to generate ;; fonts, which are not found. (setenv "HOME" "/tmp") @@ -5778,22 +5717,20 @@ readable format.") (define-public python-pygit2 (package (name "python-pygit2") - (version "1.6.0") + (version "1.7.1") (source (origin (method url-fetch) (uri (pypi-uri "pygit2" version)) (sha256 - (base32 "0qjd5aqpmla64da4pb47vdnrmnqdbn7248a4fzs7f5q1ax7fmb3s")))) + (base32 "0p8n25bijirxh31cv99vd1mkdsvpcs6z6441wz1fqva3b2as5ynp")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; tests don't run correctly in our environment (propagated-inputs - `(("python-cached-property" ,python-cached-property) - ("python-cffi" ,python-cffi) - ("libgit2" ,libgit2))) + (list python-cached-property python-cffi libgit2)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/libgit2/pygit2") (synopsis "Python bindings for libgit2") (description "Pygit2 is a set of Python bindings to the libgit2 shared @@ -5841,7 +5778,8 @@ humans, and implementation simplicity.") (substitute* "wmctrl.py" (("'wmctrl") (string-append "'" wmctrl "/bin/wmctrl"))))))))) - (inputs `(("wmctrl" ,wmctrl))) + (inputs (list wmctrl)) + (propagated-inputs (list python-attrs)) (home-page "https://github.com/antocuni/wmctrl") (synopsis "Tool to programmatically control Xorg windows") (description "This package provides a library for programmatically @@ -5903,12 +5841,9 @@ module from the standard Python library.") "not interaction_restores_previous_sigint_handler " "and not python_m_pdb_uses_pdbpp")))))))) (propagated-inputs - `(("python-fancycompleter" ,python-fancycompleter) - ("python-pygments" ,python-pygments) - ("python-wmctrl" ,python-wmctrl))) + (list python-fancycompleter python-pygments python-wmctrl)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-pytest python-setuptools-scm)) (home-page "https://github.com/pdbpp/pdbpp") (synopsis "Drop-in replacement for pdb") (description "Pdb++ is a drop-in replacement for @code{pdb}. It @@ -5935,7 +5870,7 @@ includes the following improvements compared to @code{pdb}: (base32 "1555wbgr5spj8xflrs4mwsrdmba2f9s72nk50xzqk9ghxaxdvy6a")))) (build-system python-build-system) (inputs - `(("poppler" ,poppler))) + (list poppler)) (home-page "https://github.com/jalan/pdftotext") (synopsis "Simple PDF text extraction") (description "Pdftotext is a Python library of PDF text extraction.") @@ -5959,7 +5894,7 @@ includes the following improvements compared to @code{pdb}: (lambda* (#:key tests? #:allow-other-keys) (when tests? (invoke "make" "test"))))))) - (native-inputs `(("python-pytest" ,python-pytest))) + (native-inputs (list python-pytest)) (home-page "https://github.com/mitsuhiko/pluginbase") (synopsis "Simple but flexible plugin system for Python") (description "PluginBase is a library useful in the development of @@ -5979,7 +5914,7 @@ flexible plugin systems in Python.") "000ypfns5x72b41w5f9pk6k3jnr35scliqfbvmilyvv0178005i8")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/podhmo/python-node-semver") (synopsis "Python port of node-semver") (description "This module provides a Python version of node-semver, a @@ -6018,61 +5953,6 @@ parse and apply unified diffs. It has features such as: @end itemize") (license license:expat))) -(define-public python-pyparsing - (package - (name "python-pyparsing") - (version "2.4.6") - (source - (origin - (method url-fetch) - (uri (pypi-uri "pyparsing" version)) - (sha256 - (base32 "17wn5zlijc9m9zj26gy3f541y7smpj8rfhl51d025c2gm210b0sc")))) - (build-system python-build-system) - (outputs '("out" "doc")) - (arguments - `(#:tests? #f ; no test target - #:phases - (modify-phases %standard-phases - (add-after 'install 'install-doc - (lambda* (#:key outputs #:allow-other-keys) - (let* ((doc (string-append (assoc-ref outputs "doc") - "/share/doc/" ,name "-" ,version)) - (html-doc (string-append doc "/html")) - (examples (string-append doc "/examples"))) - (mkdir-p html-doc) - (mkdir-p examples) - (for-each - (lambda (dir tgt) - (map (lambda (file) - (install-file file tgt)) - (find-files dir ".*"))) - (list "docs" "htmldoc" "examples") - (list doc html-doc examples)) - #t)))))) - (home-page "https://github.com/pyparsing/pyparsing") - (synopsis "Python parsing class library") - (description - "The pyparsing module is an alternative approach to creating and -executing simple grammars, vs. the traditional lex/yacc approach, or the use -of regular expressions. The pyparsing module provides a library of classes -that client code uses to construct the grammar directly in Python code.") - (license license:expat))) - -(define-public python2-pyparsing - (package-with-python2 python-pyparsing)) - -(define-public python-pyparsing-2.4.7 - (package - (inherit python-pyparsing) - (version "2.4.7") - (source - (origin - (method url-fetch) - (uri (pypi-uri "pyparsing" version)) - (sha256 - (base32 "1hgc8qrbq1ymxbwfbjghv01fm3fbpjwpjwi0bcailxxzhf3yq0y2")))))) - (define-public python-numpydoc (package (name "python-numpydoc") @@ -6096,11 +5976,9 @@ that client code uses to construct the grammar directly in Python code.") ;; TODO: unclear why these fail. "-k" "not test_MyClass and not test_my_function"))))))) (propagated-inputs - `(("python-sphinx" ,python-sphinx))) + (list python-sphinx)) (native-inputs - `(("python-matplotlib" ,python-matplotlib) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-matplotlib python-pytest python-pytest-cov)) (home-page "https://pypi.org/project/numpydoc/") (synopsis "Numpy's Sphinx extensions") @@ -6140,7 +6018,7 @@ that client code uses to construct the grammar directly in Python code.") (build-system python-build-system) (arguments `(#:tests? #f)) ; no tests included (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (home-page "https://github.com/pydata/numexpr") (synopsis "Fast numerical expression evaluator for NumPy") (description @@ -6171,7 +6049,7 @@ transcendental functions).") ;; Enable this for the next release which uses 'python-pytest'. '(#:tests? #f)) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://matplotlib.org/cycler/") (synopsis "Composable keyword argument iterator") (description @@ -6200,9 +6078,9 @@ To address this and enable easy cycling over arbitrary @code{kwargs}, the (base32 "0x7nkphr6g5ql5fvgss8l56rgiyjgh6fm8zzs73i94ci9wzlm63w")))) (build-system python-build-system) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (arguments `(#:phases (modify-phases %standard-phases @@ -6232,8 +6110,7 @@ convert between colorspaces like sRGB, XYZ, CIEL*a*b*, CIECAM02, CAM02-UCS, etc. (arguments `(#:tests? #f)) ;no test suite (propagated-inputs - `(("python-protobuf" ,python-protobuf) - ("python-pyhamcrest" ,python-pyhamcrest))) + (list python-protobuf python-pyhamcrest)) (home-page "https://github.com/dayfine/proto-matcher") (synopsis "PyHamcrest test matchers for protocol buffers") (description "This package provides the following PyHamcrest test @@ -6260,21 +6137,20 @@ comparison. (define-public python-matplotlib (package (name "python-matplotlib") - (version "3.1.2") + (version "3.4.3") (source (origin (method url-fetch) (uri (pypi-uri "matplotlib" version)) (sha256 - (base32 "1nmshfqh7wyg15i16hx1yiylcvzkws29ivn66n3i0wyqwcpjr3lf")) - (patches - (search-patches "python-matplotlib-run-under-wayland-gtk3.patch")))) + (base32 "06032j0ccjxldx4z9kf97qps2g36mfgvy1nap3b9n75kzmnm4kzw")))) (build-system python-build-system) (propagated-inputs ; the following packages are all needed at run time `(("python-cycler" ,python-cycler) ("python-kiwisolver" ,python-kiwisolver) ("python-pyparsing" ,python-pyparsing) ("python-pygobject" ,python-pygobject) + ("python-certifi" ,python-certifi) ("gobject-introspection" ,gobject-introspection) ("python-tkinter" ,python "tk") ("python-dateutil" ,python-dateutil) @@ -6289,18 +6165,20 @@ comparison. ("python-pycairo" ,python-pycairo) ("python-cairocffi" ,python-cairocffi))) (inputs - `(("libpng" ,libpng) - ("freetype" ,freetype) - ("cairo" ,cairo) - ("glib" ,glib) - ;; FIXME: Add backends when available. - ;("python-wxpython" ,python-wxpython) - ("tcl" ,tcl) - ("tk" ,tk))) + (list libpng + freetype + qhull + cairo + glib + ;; FIXME: Add backends when available. + ;("python-wxpython" ,python-wxpython) + tcl + tk)) (native-inputs `(("pkg-config" ,pkg-config) ("python-pytest" ,python-pytest) ("python-mock" ,python-mock) + ("python-wheel" ,python-wheel) ("unzip" ,unzip) ("jquery-ui" ,(origin @@ -6323,7 +6201,8 @@ comparison. "test_.*\\.py$")) (("^from matplotlib" match) (string-append "import pytest\n" match)) - (("( *)@image_comparison" match indent) + (("( *)@([^_]+_)*(image_comparison|check_figures_equal)" match + indent) (string-append indent "@pytest.mark.skip(reason=\"unknown minor image differences\")\n" match))) @@ -6332,7 +6211,9 @@ comparison. (for-each delete-file ;; test_normal_axes, test_get_tightbbox_polar '("lib/matplotlib/tests/test_axes.py" - ;; We don't use the webagg backend and this test forces it. + "lib/matplotlib/tests/test_polar.py" + ;; We don't use the webagg backend and this test + ;; forces it. "lib/matplotlib/tests/test_backend_webagg.py" ;; test_outward_ticks "lib/matplotlib/tests/test_tightlayout.py" @@ -6347,9 +6228,11 @@ comparison. (lambda* (#:key outputs inputs #:allow-other-keys) (let* ((python-version (python-version (assoc-ref inputs "python"))) - (dir (string-append (assoc-ref outputs "out") - "/lib/python" python-version "/site-packages" - "/matplotlib/backends/web_backend/"))) + (dir + (string-append (assoc-ref outputs "out") + "/lib/python" python-version + "/site-packages" + "/matplotlib/backends/web_backend/"))) (mkdir-p dir) (invoke "unzip" (assoc-ref inputs "jquery-ui") @@ -6372,7 +6255,10 @@ comparison. (setenv "CFLAGS" "-ffloat-store")) (call-with-output-file "setup.cfg" (lambda (port) - (format port "[directories]~% + (format port "[libs]~% +system_freetype = true +system_qhull = true +[directories]~% basedirlist = ~a,~a~% [packages]~% tests = True~%" @@ -6414,8 +6300,15 @@ toolkits.") (mkdir-p dir) (invoke "unzip" (assoc-ref inputs "jquery-ui") - "-d" dir)) - #t)) + "-d" dir)))) + ;; Without this file mpl_toolkits cannot be imported. + (add-after 'install 'create-init-file + (lambda* (#:key outputs #:allow-other-keys) + (with-output-to-file + (string-append + (assoc-ref outputs "out") + "/lib/python2.7/site-packages/mpl_toolkits/__init__.py") + (lambda _ (display ""))))) (delete 'fix-and-disable-failing-tests) (delete 'check))))) ; These tests weren't run the the past. ;; Make sure to use special packages for Python 2 instead @@ -6451,7 +6344,7 @@ toolkits.") ("python-ipykernel" ,python-ipykernel) ("python-mock" ,python-mock) ("graphviz" ,graphviz) - ("texlive" ,(texlive-union (list texlive-amsfonts/patched + ("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts texlive-latex-amsmath texlive-latex-enumitem texlive-latex-expdlist @@ -6463,8 +6356,8 @@ toolkits.") texlive-pdftex texlive-fonts-ec - texlive-fonts-adobe-times - texlive-fonts-txfonts))) + texlive-times + texlive-txfonts))) ("texinfo" ,texinfo) ,@(package-native-inputs python-matplotlib))) (arguments @@ -6477,9 +6370,7 @@ toolkits.") (replace 'build (lambda _ (chdir "doc") - (setenv "PYTHONPATH" - (string-append (getenv "PYTHONPATH") - ":" (getcwd) "/../examples/units")) + (setenv "PYTHONPATH" "../examples/units") (substitute* "conf.py" ;; Don't use git. (("^SHA = check_output.*") @@ -6514,13 +6405,35 @@ toolkits.") "./matplotlib-figures") (invoke "makeinfo" "--no-split" "-o" "matplotlib.info" "matplotlib.texi")) - (install-file "build/texinfo/matplotlib.info" info)) - #t))))) + (install-file "build/texinfo/matplotlib.info" info))))))) (home-page (package-home-page python-matplotlib)) (synopsis "Documentation for the python-matplotlib package") (description (package-description python-matplotlib)) (license (package-license python-matplotlib)))) +(define-public python-matplotlib-inline + (package + (name "python-matplotlib-inline") + (version "0.1.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "matplotlib-inline" version)) + (sha256 + (base32 "1vilzwj3xp00mxprmmn1hlafm3p23vn56s46kx3ra4qd5signjx0")))) + (build-system python-build-system) + (propagated-inputs + (list python-matplotlib python-traitlets)) + (arguments + ;; Tests disabled because of a circular dependency with ipython. + `(#:tests? #f)) + (home-page "https://github.com/ipython/matplotlib-inline") + (synopsis "Inline Matplotlib backend for Jupyter") + (description + "This package provides a Matplotlib inline back-end for IPython and +Jupyter.") + (license license:bsd-3))) + (define-public python-matplotlib-venn (package (name "python-matplotlib-venn") @@ -6535,11 +6448,9 @@ toolkits.") (build-system python-build-system) (arguments '(#:tests? #f)) ; tests are not included (propagated-inputs - `(("python-matplotlib" ,python-matplotlib) - ("python-numpy" ,python-numpy) - ("python-scipy" ,python-scipy))) + (list python-matplotlib python-numpy python-scipy)) (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (home-page "https://github.com/konstantint/matplotlib-venn") (synopsis "Plot area-proportional Venn diagrams") (description @@ -6571,14 +6482,14 @@ three-way Venn diagrams in @code{matplotlib}.") (invoke "python3" "pysnptools/test.py")) #t)))))) (propagated-inputs - `(("python-dill" ,python-dill) - ("python-h5py" ,python-h5py) - ("python-numpy" ,python-numpy) - ("python-pandas" ,python-pandas) - ("python-psutil" ,python-psutil) - ("python-scipy" ,python-scipy))) + (list python-dill + python-h5py + python-numpy + python-pandas + python-psutil + python-scipy)) (native-inputs - `(("python-cython" ,python-cython))) + (list python-cython)) (home-page "http://microsoftgenomics.github.io/PySnpTools/") (synopsis "Library for reading and manipulating genetic data") (description @@ -6603,9 +6514,9 @@ operators such as union, intersection, and difference.") (base32 "0p8n2ljdacfixkiw092974dmhy4s1c0h032ii1z9kwi9h5h5rgmy")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (home-page "https://github.com/storpipfugl/pykdtree") (synopsis "Fast kd-tree implementation with OpenMP-enabled queries") (description @@ -6631,8 +6542,7 @@ search in Python.") (lambda _ (invoke "pytest" "-vv" "test.py")))))) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (home-page "https://github.com/minrk/wurlitzer") (synopsis "Capture C-level output in context managers") (description @@ -6714,7 +6624,7 @@ a simple netcat replacement with chaining support.") (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://pycodestyle.readthedocs.io/") (synopsis "Python style guide checker") (description "@code{pycodestyle} (formerly pep8) is a tool to check @@ -6749,27 +6659,14 @@ Python code against some of the style conventions in "07ikq2c72kd263hpldw55y0px2l3g34hjk66ml9lryh1jv287qmf")))) (build-system python-build-system) (arguments - '(#:modules ((ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26) - (guix build utils) - (guix build python-build-system)) - #:phases (modify-phases %standard-phases + '(#:phases (modify-phases %standard-phases (replace 'check (lambda* (#:key tests? #:allow-other-keys) (if tests? - (begin - (let ((libdir (find (cut string-prefix? "lib." <>) - (scandir "build")))) - (setenv "PYTHONPATH" - (string-append "./build/" libdir ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-vv"))) - (format #t "test suite not run~%")) - #t))))) + (invoke "pytest" "-vv") + (format #t "test suite not run~%"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-pytest python-pytest-cov)) (home-page "https://github.com/aio-libs/multidict/") (synopsis "Multidict implementation") (description "Multidict is dict-like collection of key-value pairs @@ -6789,10 +6686,9 @@ where key might be occurred more than once in the container.") "1bc2v0yflsxjyyjx4q9wqx0j3bvzcw9z87d5pz4iqac7bsxhn1q4")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (native-inputs - `(("python-flake8" ,python-flake8) - ("python-pycodestyle" ,python-pycodestyle))) + (list python-flake8 python-pycodestyle)) (home-page "https://github.com/gruns/orderedmultidict") (synopsis "Python Ordered Multivalue Dictionary - omdict") (description "This package contains a library for ordered multivalue @@ -6814,8 +6710,7 @@ multivalue dictionary that retains the order of insertions and deletions.") "1w6vh627vrmgfbvrdcxrc3k4gxcldrb2lpgxv9irkdds851qrzb0")))) (build-system python-build-system) (propagated-inputs - `(("python-pycodestyle" ,python-pycodestyle) - ("python-toml" ,python-toml))) + (list python-pycodestyle python-toml)) (home-page "https://github.com/hhatto/autopep8") (synopsis "Format Python code according to the PEP 8 style guide") (description @@ -6833,14 +6728,14 @@ by pycodestyle.") (define-public python-distlib (package (name "python-distlib") - (version "0.3.0") + (version "0.3.1") (source (origin (method url-fetch) (uri (pypi-uri "distlib" version ".zip")) (sha256 (base32 - "08fyi2r246733vharl2yckw20rilci28r91mzrnnvcr638inw5if")))) + "1wdzv7fsjhrkhh1wfkarlhcwa8m00mgcpdsvknmf2qy8f9l13xpd")))) (build-system python-build-system) (arguments `(#:phases @@ -6856,7 +6751,7 @@ by pycodestyle.") ;; NOTE: Any value works, the variable just has to be present. (setenv "SKIP_ONLINE" "1") #t))))) - (native-inputs `(("unzip" ,unzip))) + (native-inputs (list unzip)) (home-page "https://bitbucket.org/pypa/distlib") (synopsis "Distribution utilities") (description "Distlib is a library which implements low-level functions that @@ -6864,19 +6759,6 @@ relate to packaging and distribution of Python software. It is intended to be used as the basis for third-party packaging tools.") (license license:psfl))) -;; TODO: Merge with 'python-distlib' on the next rebuild cycle. -(define-public python-distlib/next - (package - (inherit python-distlib) - (version "0.3.1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "distlib" version ".zip")) - (sha256 - (base32 - "1wdzv7fsjhrkhh1wfkarlhcwa8m00mgcpdsvknmf2qy8f9l13xpd")))))) - (define-public python-distutils-extra (package (name "python-distutils-extra") @@ -6969,17 +6851,16 @@ the OleFileIO module from PIL, the Python Image Library.") (arguments `(#:tests? #false)) ;require python-xmp-toolkit (native-inputs - `(("pybind11" ,pybind11) - ("python-setuptools" ,python-setuptools) - ("python-setuptools-scm" ,python-setuptools-scm/next) - ("python-setuptools-scm-git-archive" ,python-setuptools-scm-git-archive) - ("python-toml" ,python-toml) - ("python-wheel" ,python-wheel))) + (list pybind11 + python-setuptools + python-setuptools-scm + python-setuptools-scm-git-archive + python-toml + python-wheel)) (inputs - `(("qpdf" ,qpdf))) + (list qpdf)) (propagated-inputs - `(("python-lxml" ,python-lxml) - ("python-pillow" ,python-pillow))) + (list python-lxml python-pillow)) (home-page "https://github.com/pikepdf/pikepdf") (synopsis "Read and write PDFs with Python") (description @@ -6999,7 +6880,7 @@ the OleFileIO module from PIL, the Python Image Library.") "086g7nhv52wclrwnzbzs2x3nvyzs2hfq1bvgivsrp5f7r7wiiz7n")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (inputs `(("freetype" ,freetype) ("lcms" ,lcms) @@ -7009,7 +6890,7 @@ the OleFileIO module from PIL, the Python Image Library.") ("openjpeg" ,openjpeg) ("zlib" ,zlib))) (propagated-inputs - `(("python-olefile" ,python-olefile))) + (list python-olefile)) (arguments `(#:phases (modify-phases %standard-phases @@ -7053,7 +6934,11 @@ a general image processing tool.") (uri (pypi-uri "Pillow" version)) (sha256 (base32 - "0l5rv8jkdrb5q846v60v03mcq64yrhklidjkgwv6s1pda71g17yv"))))))) + "0l5rv8jkdrb5q846v60v03mcq64yrhklidjkgwv6s1pda71g17yv")))) + (arguments + (substitute-keyword-arguments (package-arguments python-pillow) + ;; FIXME: One of the tests is failing. + ((#:tests? _ #f) #f)))))) (define-public python-pillow-2.9 (package @@ -7096,9 +6981,8 @@ a general image processing tool.") (for-each make-file-writable (find-files "Tests")) #t)))))) (inputs - `(("libraqm" ,libraqm) - ("libimagequant" ,libimagequant) - ,@(package-inputs python-pillow))) + (modify-inputs (package-inputs python-pillow) + (prepend libraqm libimagequant))) (home-page "https://github.com/uploadcare/pillow-simd") (synopsis "Fork of the Python Imaging Library (Pillow)") (description "This package is a fork of Pillow which adds support for SIMD @@ -7155,28 +7039,28 @@ def customize_build(EXTENSIONS, OPTIONS): "))) #t))))) (inputs - `(("c-blosc" ,c-blosc) - ("giflib" ,giflib) - ("brotli" ,brotli) - ("libjpeg-turbo" ,libjpeg-turbo) - ("libpng" ,libpng) - ("libtiff" ,libtiff) - ("libwebp" ,libwebp) - ("lz4" ,lz4) - ("snappy" ,snappy) - ("xz" ,xz) - ("zlib" ,zlib) - ("zstd" ,zstd "lib"))) - (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list c-blosc + giflib + brotli + libjpeg-turbo + libpng + libtiff + libwebp + lz4 + snappy + xz + zlib + `(,zstd "lib"))) + (propagated-inputs + (list python-numpy)) (native-inputs ;; For building. - `(("python-cython" ,python-cython) - ;; For testing. Incomplete. - ;("python-numcodecs" ,python-numcodecs) - ;("python-zarr" ,python-zarr) - ;("python-pytest" ,python-pytest) - )) + (list python-cython + ;; For testing. Incomplete. + ;("python-numcodecs" ,python-numcodecs) + ;("python-zarr" ,python-zarr) + ;("python-pytest" ,python-pytest) + )) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Image transformation, compression, and decompression codecs") @@ -7200,7 +7084,7 @@ tifffile, czifile, and other scientific image input/output modules.") (build-system python-build-system) (arguments `(#:tests? #f)) ; there are none (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Read and write ImageJ ROI format") (description "Roifile is a Python library to read, write, create, and plot @@ -7223,8 +7107,7 @@ regions of interest, geometric shapes, paths, text, etc for image overlays.") ;; Tests require lfdfiles, which depends on tifffile (arguments `(#:tests? #f)) (propagated-inputs - `(("python-numpy" ,python-numpy) - ("python-imagecodecs" ,python-imagecodecs))) + (list python-numpy python-imagecodecs)) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Read and write TIFF(r) files") (description "This package lets you read image and metadata from many @@ -7254,10 +7137,8 @@ numpy arrays to TIFF, BigTIFF, and ImageJ hyperstack compatible files.") (arguments `(#:tests? #f)) ; No tests exist, despite a test dependency on pytest. (propagated-inputs - `(("python-click" ,python-click) - ("python-numpy" ,python-numpy) - ("python-tifffile" ,python-tifffile))) - (native-inputs `(("python-cython" ,python-cython))) + (list python-click python-numpy python-tifffile)) + (native-inputs (list python-cython)) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Work with LFD data files") (description @@ -7291,11 +7172,9 @@ experimental data and metadata at the Laboratory for Fluorescence Dynamics.") (invoke "pytest" "-vv")) #t)))))) (propagated-inputs - `(("python-numpy" ,python-numpy) - ("python-pillow" ,python-pillow) - ("python-psutil" ,python-psutil))) + (list python-numpy python-pillow python-psutil)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://imageio.github.io/") (synopsis "Library for reading and writing a wide range of image data") (description @@ -7318,7 +7197,7 @@ data, and scientific formats.") (outputs '("out" "doc")) (build-system python-build-system) (native-inputs - `(("pkg-config" ,pkg-config))) + (list pkg-config)) (arguments `(#:phases (modify-phases %standard-phases @@ -7400,10 +7279,10 @@ formulas and hyperlinks to multiple worksheets in an Excel 2007+ XLSX file.") (with-directory-excursion (string-append cwd "/build/" libdir) (invoke "pytest" "-vv")))))))) (native-inputs - `(("python-matplotlib" ,python-matplotlib) ;for tests - ("python-pytest" ,python-pytest))) + (list python-matplotlib ;for tests + python-pytest)) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (synopsis "Wavelet transforms in Python") (description "PyWavelets is a library for wavelet transforms in Python. Wavelets are @@ -7436,7 +7315,7 @@ localized only in frequency instead of in time and frequency.") (setenv "HOME" "/tmp") #t))))) (inputs - `(("imagemagick" ,imagemagick))) + (list imagemagick)) (home-page "https://github.com/dylanaraps/pywal") (synopsis "Color palette generator and applicator") (description @@ -7458,13 +7337,10 @@ your favourite programs.") "10gabhhg3rgacd5ahmi2r128z99fzbrbx6mz1nnq0dxmhmn5rpjf")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six) - ("python-requests_ntlm" ,python-requests_ntlm) - ("python-xmltodict" ,python-xmltodict) - ("python-kerberos" ,python-kerberos))) + (list python-six python-requests_ntlm python-xmltodict + python-kerberos)) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (home-page "https://github.com/diyan/pywinrm/") (synopsis "Python library for Windows Remote Management (WinRM)") @@ -7487,10 +7363,10 @@ any machine that can run Python.") "0nkglsm9nbhv238iagmmsjcz6lf1yfdvp5kmspphdj385vz9r50j")))) (build-system python-build-system) (inputs - `(("libxcb" ,libxcb))) + (list libxcb)) (propagated-inputs - `(("python-cffi" ,python-cffi) ; used at run time - ("python-six" ,python-six))) + (list python-cffi ; used at run time + python-six)) (arguments `(;; FIXME: Tests need more work. See ".travis.yml" in the repository. #:tests? #f @@ -7539,19 +7415,16 @@ support for Python 3 and PyPy. It is based on cffi.") (build-system python-build-system) (outputs '("out" "doc")) (inputs - `(("glib" ,glib) - ("gtk+" ,gtk+) - ("gdk-pixbuf" ,gdk-pixbuf) - ("cairo" ,cairo))) + (list glib gtk+ gdk-pixbuf cairo)) (native-inputs - `(("python-numpy" ,python-numpy) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-runner" ,python-pytest-runner) - ("python-sphinx" ,python-sphinx) - ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme))) + (list python-numpy + python-pytest + python-pytest-cov + python-pytest-runner + python-sphinx + python-sphinx-rtd-theme)) (propagated-inputs - `(("python-xcffib" ,python-xcffib))) ; used at run time + (list python-xcffib)) ; used at run time (arguments `(#:phases (modify-phases %standard-phases @@ -7564,22 +7437,16 @@ support for Python 3 and PyPy. It is based on cffi.") (("filenames = \\(library_filename,\\) \\+ filenames") "pass") (("libcairo.so.2") - (string-append (assoc-ref inputs "cairo") - "/lib/libcairo.so.2"))) + (search-input-file inputs "/lib/libcairo.so.2"))) (substitute* "cairocffi/pixbuf.py" (("libgdk_pixbuf-2.0.so.0") - (string-append (assoc-ref inputs "gdk-pixbuf") - "/lib/libgdk_pixbuf-2.0.so.0")) + (search-input-file inputs "/lib/libgdk_pixbuf-2.0.so.0")) (("libgobject-2.0.so.0") - (string-append (assoc-ref inputs "glib") - "/lib/libgobject-2.0.so.0")) + (search-input-file inputs "/lib/libgobject-2.0.so.0")) (("libglib-2.0.so.0") - (string-append (assoc-ref inputs "glib") - "/lib/libglib-2.0.so.0")) + (search-input-file inputs "/lib/libglib-2.0.so.0")) (("libgdk-3.so.0") - (string-append (assoc-ref inputs "gtk+") - "/lib/libgdk-3.so.0"))) - #t)) + (search-input-file inputs "/lib/libgdk-3.so.0"))))) (add-after 'unpack 'disable-linters ;; Their check fails; none of our business. (lambda _ @@ -7665,7 +7532,7 @@ etc. The core of this module is a decorator factory.") ;; should be set to the path of the libdrmaa library. (arguments '(#:tests? #f)) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://pypi.org/project/drmaa/") (synopsis "Python bindings for the DRMAA library") (description @@ -7692,9 +7559,7 @@ Python language binding specification.") (build-system python-build-system) (arguments '(#:tests? #f)) ; Test file 'grako.ebnf' is missing from archive. (native-inputs - `(("unzip" ,unzip) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list unzip python-pytest python-pytest-runner)) (home-page "https://bitbucket.org/neogeny/grako") (synopsis "EBNF parser generator") (description @@ -7728,11 +7593,9 @@ memoizing PEG/Packrat parser in Python.") (lambda _ (invoke "python" "setup.py" "pytest")))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-pytest python-pytest-runner)) (propagated-inputs - `(("python-numpy" ,python-numpy) - ("python-ply" ,python-ply))) + (list python-numpy python-ply)) (home-page "https://github.com/bdcht/grandalf") (synopsis "Graph and drawing algorithms framework") (description @@ -7777,9 +7640,7 @@ you to actually draw things with your favorite toolkit.") (arguments '(#:tests? #f)) ; FIXME: Requires python-cherrypy. (propagated-inputs - `(("python-psutil" ,python-psutil) - ("python-drmaa" ,python-drmaa) - ("python-pyzmq" ,python-pyzmq))) + (list python-psutil python-drmaa python-pyzmq)) (home-page "https://github.com/pygridtools/gridmap") (synopsis "Create jobs on a cluster directly from Python") (description @@ -7803,12 +7664,9 @@ cluster without needing to write any wrapper code yourself.") (base32 "11bd87474qpif20xdcn0ra1idj5k16ka51i658wfpxwc6nzsn92b")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-mock" ,python-mock) - ("python-tox" ,python-tox) - ("which" ,which))) ;for tests + (list python-pytest python-mock python-tox which)) ;for tests (propagated-inputs - `(("python-jinja2" ,python-jinja2))) + (list python-jinja2)) (arguments `(#:phases (modify-phases %standard-phases @@ -7844,7 +7702,7 @@ displayed.") (base32 "16siqc3brbk7dp4d9sg48bjl6a8wyy24aib3il1hf4y2624draxh")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (arguments `(#:phases (modify-phases %standard-phases @@ -7896,7 +7754,7 @@ wraps Python's standard library threading and multiprocessing objects.") ("which" ,which) ("bash-full" ,bash))) ;full Bash for 'test_replwrap.py' (propagated-inputs - `(("python-ptyprocess" ,python-ptyprocess))) + (list python-ptyprocess)) (home-page "http://pexpect.readthedocs.org/") (synopsis "Controlling interactive console applications") (description @@ -7912,36 +7770,37 @@ child application and control it as if a human were typing commands.") (define-public python-setuptools-scm (package (name "python-setuptools-scm") - (version "3.4.3") + (version "6.3.2") (source (origin (method url-fetch) (uri (pypi-uri "setuptools_scm" version)) (sha256 - (base32 - "083k93wi7mrmp1cn28hcbnr6sivbgls0y7zz2m5qzn1wg04a3f16")))) + (base32 "1wm0i27siyy1yqr9rv7lqvb65agay9051yi8jzmi8dgb3q4ai6m4")))) (build-system python-build-system) + (propagated-inputs + `(("python-packaging",python-packaging-bootstrap) + ("python-tomli" ,python-tomli))) (home-page "https://github.com/pypa/setuptools_scm/") (synopsis "Manage Python package versions in SCM metadata") (description "Setuptools_scm handles managing your Python package versions in @dfn{software configuration management} (SCM) metadata instead of declaring them as the version argument or in a SCM managed file.") - (license license:expat))) - -;; TODO: Merge with 'python-setuptools-scm' on the next rebuild cycle. -(define-public python-setuptools-scm/next - (package - (inherit python-setuptools-scm) - (version "5.0.1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "setuptools_scm" version)) - (sha256 - (base32 "0ahlrxxkx2xhmxskx57gc96w3bdndflxx30304ihvm7ds136nny8")))))) + (license license:expat) + (properties `((python2-variant . ,(delay python2-setuptools-scm)))))) (define-public python2-setuptools-scm - (package-with-python2 python-setuptools-scm)) + (let ((base (package-with-python2 + (strip-python2-variant python-setuptools-scm)))) + (package/inherit base + (version "5.0.2") ;no python 2 support in version 6 + (source (origin + (method url-fetch) + (uri (pypi-uri "setuptools_scm" version)) + (sha256 + (base32 + "1j75i8avp9fhrkpbabsa8vyvbi49kmxlq6l10xir9qs96kfwx843")))) + (propagated-inputs '())))) (define-public python-sexpdata (package @@ -7965,18 +7824,17 @@ functions like pickle, json or PyYAML module.") (define-public python-pathlib2 (package (name "python-pathlib2") - (version "2.3.3") + (version "2.3.6") (source (origin (method url-fetch) (uri (pypi-uri "pathlib2" version)) (sha256 (base32 - "0hpp92vqqgcd8h92msm9slv161b1q160igjwnkf2ag6cx0c96695")))) + "0psyg60vk8wca473djrh0v9gb853z8wcawi8im5dyg00amawp2vx")))) (build-system python-build-system) (propagated-inputs - `(("python-scandir" ,python-scandir) - ("python-six" ,python-six))) + (list python-scandir python-six)) (home-page "https://pypi.org/project/pathlib2/") (synopsis "Object-oriented file system paths") (description "The goal of pathlib2 is to provide a backport of the @@ -7998,8 +7856,7 @@ older Python versions.") "1hq626mx5jl9zfl0wdrjkxsnh8qd98fqv322n68b9251xjk4bxqr")))) (build-system python-build-system) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm) - ("python-toml" ,python-toml))) + (list python-setuptools-scm python-toml)) (home-page "http://importlib-resources.readthedocs.io/") (synopsis "Read resources from Python packages") (description @@ -8032,8 +7889,7 @@ older Python versions.") "")) #t))))) (propagated-inputs - `(("python-pathlib2" ,python2-pathlib2) - ("python-typing" ,python2-typing))) + (list python2-pathlib2 python2-typing)) (home-page "https://gitlab.com/python-devs/importlib_resources") (synopsis "Backport of @code{importlib.resources} from Python 3.7") (description @@ -8064,11 +7920,9 @@ for older versions of Python.") "00ikdj4gjhankdljnz7g5ggak4k9lql2926x0x117ir9j2lv7x86")))) (build-system python-build-system) (propagated-inputs - `(("python-zipp" ,python-zipp))) + (list python-zipp)) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm) - ("python-pyfakefs" ,python-pyfakefs) - ("python-packaging" ,python-packaging))) + (list python-setuptools-scm python-pyfakefs python-packaging)) (home-page "https://importlib-metadata.readthedocs.io/") (synopsis "Read metadata from Python packages") (description @@ -8167,14 +8021,14 @@ finding unresolved symbols in Python code and their corresponding imports.") "0zimrnkh33b9g8ffw11mjh6kvs54cy5gcjw1h5cl1r7dc833dmkm")))) (build-system python-build-system) (propagated-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-checkdocs" ,python-pytest-checkdocs) - ("python-pytest-flake8" ,python-pytest-flake8) - ("python-rst.linker" ,python-rst.linker) - ("python-setuptools" ,python-setuptools) - ("python-setuptools-scm" ,python-setuptools-scm) - ("python-six" ,python-six) - ("python-sphinx" ,python-sphinx))) + (list python-pytest + python-pytest-checkdocs + python-pytest-flake8 + python-rst.linker + python-setuptools + python-setuptools-scm + python-six + python-sphinx)) (home-page "https://github.com/jaraco/jaraco.packaging") (synopsis "Tools to supplement packaging Python releases") (description @@ -8195,15 +8049,14 @@ releases.") (outputs '("out" "doc")) (build-system python-build-system) (propagated-inputs - `(("python-appdirs" ,python-appdirs) - ("python-importlib-metadata" ,python-importlib-metadata))) + (list python-appdirs python-importlib-metadata)) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm) - ("python-sphinx" ,python-sphinx) - ("python-rst.linker" ,python-rst.linker) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner) - ("python-jaraco-packaging" ,python-jaraco-packaging))) + (list python-setuptools-scm + python-sphinx + python-rst.linker + python-pytest + python-pytest-runner + python-jaraco-packaging)) (arguments `(#:phases (modify-phases %standard-phases @@ -8246,7 +8099,7 @@ common operations on files to be invoked on those path objects directly.") (base32 "0wwi1c6md4vkbcsfsf8dklf3vr4mcdj4mpxkanwgb6jb1432x5yw")))) (build-system python-build-system) (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (home-page "http://cheeseshop.python.org/pypi/simplegeneric") (synopsis "Python module for simple generic functions") (description @@ -8310,22 +8163,22 @@ away.") (setenv "HOME" (getcwd)) #t))))) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-decorator" ,python-decorator) - ("python-ipykernel" ,python-ipykernel) - ("python-ipython" ,python-ipython) - ("python-ipython-genutils" ,python-ipython-genutils) - ("python-jupyter-client" ,python-jupyter-client) - ("python-pyzmq" ,python-pyzmq) - ("python-tornado" ,python-tornado) - ("python-traitlets" ,python-traitlets))) - (native-inputs - `(("python-ipython" ,python-ipython) - ("python-mock" ,python-mock) - ("python-nose" ,python-nose) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-testpath" ,python-testpath))) + (list python-dateutil + python-decorator + python-ipykernel + python-ipython + python-ipython-genutils + python-jupyter-client + python-pyzmq + python-tornado + python-traitlets)) + (native-inputs + (list python-ipython + python-mock + python-nose + python-pytest + python-pytest-cov + python-testpath)) (home-page "https://ipython.org/") (synopsis "Interactive Parallel Computing with IPython") (description @@ -8369,12 +8222,12 @@ CLI scripts: (invoke "python" "example/example.py" "--local")) #t)))))) (propagated-inputs - `(("python-ipyparallel" ,python-ipyparallel) - ("python-ipython" ,python-ipython) - ("python-netifaces" ,python-netifaces) - ("python-pyzmq" ,python-pyzmq) - ("python-setuptools" ,python-setuptools) - ("python-six" ,python-six))) + (list python-ipyparallel + python-ipython + python-netifaces + python-pyzmq + python-setuptools + python-six)) (home-page "https://github.com/roryk/ipython-cluster-helper") (synopsis "Simplify IPython cluster start up and use for multiple schedulers") @@ -8401,12 +8254,9 @@ cluster down and deletes the throwaway profile.") (modify-phases %standard-phases (replace 'check (lambda _ (invoke "pytest" "-vv" "traitlets")))))) (propagated-inputs - `(("python-ipython-genutils" ,python-ipython-genutils) - ("python-decorator" ,python-decorator) - ("python-six" ,python-six))) + (list python-ipython-genutils python-decorator python-six)) (native-inputs - `(("python-pytest" ,python-pytest))) - (properties `((python2-variant . ,(delay python2-traitlets)))) + (list python-pytest)) (home-page "https://ipython.org") (synopsis "Configuration system for Python applications") (description @@ -8418,13 +8268,6 @@ is a distinct layer on top of traitlets, so you can use traitlets in your code without using the configuration machinery.") (license license:bsd-3))) -(define-public python2-traitlets - (let ((traitlets (package-with-python2 (strip-python2-variant python-traitlets)))) - (package/inherit traitlets - (propagated-inputs - `(("python2-enum34" ,python2-enum34) - ,@(package-propagated-inputs traitlets)))))) - (define-public python-jupyter-core (package (name "python-jupyter-core") @@ -8451,12 +8294,12 @@ without using the configuration machinery.") (add-after 'unpack 'patch-testsuite (lambda _ ;; test_not_on_path() and test_path_priority() try to run a test - ;; that loads jupyter_core, so we need PYTHONPATH + ;; that loads jupyter_core, so we need GUIX_PYTHONPATH (substitute* "jupyter_core/tests/test_command.py" (("env = \\{'PATH': ''\\}") - "env = {'PATH': '', 'PYTHONPATH': os.environ['PYTHONPATH']}") + "env = {'PATH': '', 'PYTHONPATH': os.environ['GUIX_PYTHONPATH']}") (("env = \\{'PATH': str\\(b\\)\\}") - "env = {'PATH': str(b), 'PYTHONPATH': os.environ['PYTHONPATH']}")) + "env = {'PATH': str(b), 'PYTHONPATH': os.environ['GUIX_PYTHONPATH']}")) #t)) ;; Migration is running whenever etc/jupyter exists, but the ;; Guix-managed directory will never contain any migratable IPython @@ -8470,10 +8313,9 @@ without using the configuration machinery.") (assoc-ref outputs "out") "/etc/jupyter/migrated"))))))) (propagated-inputs - `(("python-traitlets" ,python-traitlets))) + (list python-traitlets)) (native-inputs - `(("python-six" ,python-six) - ("python-pytest" ,python-pytest))) + (list python-six python-pytest)) ;; This package provides the `jupyter` binary and thus also exports the ;; search paths. (native-search-paths @@ -8520,14 +8362,10 @@ without using the configuration machinery.") (inputs `(("iproute" ,iproute))) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-jupyter-core" ,python-jupyter-core) - ("python-pyzmq" ,python-pyzmq) - ("python-tornado" ,python-tornado-6) - ("python-traitlets" ,python-traitlets))) + (list python-dateutil python-jupyter-core python-pyzmq + python-tornado-6 python-traitlets)) (native-inputs `(("python-pytest" ,python-pytest) - ("python-pytest-asyncio" ,python-pytest-asyncio) ("python-pytest-timeout" ,python-pytest-timeout) ("python-async-generator" ,python-async-generator) ("python-mock" ,python-mock) @@ -8572,10 +8410,10 @@ installing @code{kernelspec}s for use with Jupyter frontends.") `(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ - (setenv "HOME" "/tmp") - (invoke "pytest" "-v") - #t)) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp") + (invoke "pytest" "-v")))) (add-after 'install 'set-python-file-name (lambda* (#:key outputs #:allow-other-keys) ;; Record the absolute file name of the 'python' executable in @@ -8587,15 +8425,11 @@ installing @code{kernelspec}s for use with Jupyter frontends.") (string-append "\"" (which "python") "\""))) #t)))))) (propagated-inputs - `(("python-ipython" ,python-ipython) - ("python-tornado" ,python-tornado-6) - ("python-traitlets" ,python-traitlets) - ;; imported at runtime during connect - ("python-jupyter-client" ,python-jupyter-client))) + (list python-ipython python-tornado-6 python-traitlets + ;; imported at runtime during connect + python-jupyter-client)) (native-inputs - `(("python-flaky" ,python-flaky) - ("python-nose" ,python-nose) - ("python-pytest" ,python-pytest))) + (list python-flaky python-nose python-pytest)) (home-page "https://ipython.org") (synopsis "IPython Kernel for Jupyter") (description @@ -8628,10 +8462,9 @@ installing @code{kernelspec}s for use with Jupyter frontends.") "1yash0p422nnin7z58b99d0p23nx79f5m0mainc9hsjg72jhdhr6")))) (build-system python-build-system) (propagated-inputs - `(("python-ipykernel" ,python-ipykernel))) + (list python-ipykernel)) (inputs - `(("pari-gp" ,pari-gp) - ("readline" ,readline))) + (list pari-gp readline)) (arguments `(#:tests? #f)) ; no test suite (home-page @@ -8665,41 +8498,41 @@ callback signature using a prototype function.") (define-public python-ipython (package (name "python-ipython") - (version "7.20.0") + (version "7.27.0") (source (origin (method url-fetch) (uri (pypi-uri "ipython" version ".tar.gz")) (sha256 - (base32 "17pzzyfh6z7il1j49fb32glad04pqppqjsymj67gb30ah80ay8qr")))) - (build-system python-build-system) - (propagated-inputs - `(("python-backcall" ,python-backcall) - ("python-pyzmq" ,python-pyzmq) - ("python-prompt-toolkit" ,python-prompt-toolkit-2) - ("python-terminado" ,python-terminado) - ("python-matplotlib" ,python-matplotlib) - ("python-numpy" ,python-numpy) - ("python-numpydoc" ,python-numpydoc) - ("python-jedi" ,python-jedi) - ("python-jinja2" ,python-jinja2) - ("python-mistune" ,python-mistune) - ("python-pexpect" ,python-pexpect) - ("python-pickleshare" ,python-pickleshare) - ("python-simplegeneric" ,python-simplegeneric) - ("python-jsonschema" ,python-jsonschema) - ("python-traitlets" ,python-traitlets) - ("python-nbformat" ,python-nbformat) - ("python-pygments" ,python-pygments))) + (base32 "04xgymypnbfgf2q0d5b0hanjbjsp53f055sh1p8xlq52vyzmxdaq")))) + (build-system python-build-system) + (propagated-inputs + (list python-backcall + python-pyzmq + python-prompt-toolkit-2 + python-terminado + python-matplotlib + python-matplotlib-inline + python-numpy + python-numpydoc + python-jedi + python-jinja2 + python-mistune + python-pexpect + python-pickleshare + python-simplegeneric + python-jsonschema + python-traitlets + python-nbformat + python-pygments)) (inputs - `(("readline" ,readline) - ("which" ,which))) + (list readline which)) (native-inputs - `(("graphviz" ,graphviz) - ("pkg-config" ,pkg-config) - ("python-requests" ,python-requests) ;; for tests - ("python-testpath" ,python-testpath) - ("python-nose" ,python-nose))) + (list graphviz + pkg-config + python-requests ;; for tests + python-testpath + python-nose)) (arguments `(#:phases (modify-phases %standard-phases @@ -8734,7 +8567,10 @@ callback signature using a prototype function.") ;; (which depends on ipython). (delete-file "IPython/core/tests/test_display.py") ;; AttributeError: module 'IPython.core' has no attribute 'formatters' - (delete-file "IPython/core/tests/test_interactiveshell.py")))))) + (delete-file "IPython/core/tests/test_interactiveshell.py") + ;; AttributeError: module 'matplotlib_inline' has no + ;; attribute 'backend_inline' + (delete-file "IPython/core/tests/test_pylabtools.py")))))) (home-page "https://ipython.org") (synopsis "IPython is a tool for interactive computing in Python") (description @@ -8783,21 +8619,20 @@ computing.") (copy-file "COPYING.rst" (string-append doc "/COPYING.rst"))) #t))))) (inputs - `(("python-ipython" ,python-ipython) - ("python-ipykernel" ,python-ipykernel))) + (list python-ipython python-ipykernel)) (native-inputs `(("python-sphinx" ,python-sphinx) ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme) ;; FIXME: It's possible that a smaller union would work just as well. - ("texlive" ,(texlive-union (list texlive-amsfonts/patched + ("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts texlive-fonts-ec - texlive-generic-ifxetex + texlive-generic-iftex texlive-pdftex texlive-latex-capt-of texlive-latex-cmap texlive-latex-environ texlive-latex-eqparbox - texlive-latex-etoolbox + texlive-etoolbox texlive-latex-expdlist texlive-latex-fancyhdr texlive-latex-fancyvrb @@ -8806,11 +8641,11 @@ computing.") texlive-latex-framed texlive-latex-geometry texlive-latex-graphics - texlive-latex-hyperref + texlive-hyperref texlive-latex-mdwtools texlive-latex-multirow texlive-latex-needspace - texlive-latex-oberdiek + texlive-oberdiek texlive-latex-parskip texlive-latex-preview texlive-latex-tabulary @@ -8819,7 +8654,7 @@ computing.") texlive-latex-trimspaces texlive-latex-ucs texlive-latex-upquote - texlive-latex-url + texlive-url texlive-latex-varwidth texlive-latex-wrapfig))) ("texinfo" ,texinfo))))) @@ -8836,6 +8671,15 @@ computing.") (base32 "1bky2bra6673xx8jy0826znw6cmxs89wcwwzda8d025j3jffx2sq")))) (build-system python-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'remove-vterm-tests + ;; According to Debian these tests are cursed. + ;; https://salsa.debian.org/python-team/packages/urwid/-/blob/debian/2.1.2-2/debian/changelog#L141 + (lambda _ + (delete-file "urwid/tests/test_vterm.py")))))) (home-page "http://urwid.org") (synopsis "Console user interface library for Python") (description @@ -8882,9 +8726,9 @@ features useful for text console applications.") (invoke "python" "-m" "pytest")) #t))))) (propagated-inputs - `(("python-urwid" ,python-urwid))) + (list python-urwid)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/rr-/urwid_readline") (synopsis "Text input widget for urwid that supports readline shortcuts") (description @@ -8917,12 +8761,12 @@ supports @code{readline} shortcuts.") (delete-file "tests/test_external.py") #t))))) (native-inputs - `(("python-hypothesis" ,python-hypothesis) - ("python-isort" ,python-isort) - ("python-numpy" ,python-numpy) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner) - ("python-tabulate" ,python-tabulate))) + (list python-hypothesis + python-isort + python-numpy + python-pytest + python-pytest-runner + python-tabulate)) (home-page "https://github.com/life4/textdistance") (synopsis "Compute distance between the two texts") (description "@code{textdistance} is a pure Python library for comparing @@ -8948,7 +8792,7 @@ distance between two or more sequences by many algorithms.") (build-system python-build-system) (arguments '(#:tests? #f)) ; no tests - (propagated-inputs `(("python-urwid" ,python-urwid))) + (propagated-inputs (list python-urwid)) (home-page "https://github.com/pazz/urwidtrees") (synopsis "Tree widgets for urwid") (description "Urwidtrees is a Widget Container API for the @code{urwid} @@ -8973,7 +8817,7 @@ toolkit. Use it to build trees of widgets.") (arguments `(#:tests? #f)) ;no test suite in release (native-inputs - `(("python-pyyaml" ,python-pyyaml))) + (list python-pyyaml)) (home-page "https://github.com/ua-parser/uap-python") (synopsis "User agent parser") (description @@ -8998,7 +8842,7 @@ toolkit. Use it to build trees of widgets.") (arguments `(#:tests? #f)) ;missing devices.json test file in release (propagated-inputs - `(("python-ua-parser" ,python-ua-parser))) + (list python-ua-parser)) (home-page "https://github.com/selwin/python-user-agents") (synopsis "User Agent strings parsing library") (description @@ -9012,17 +8856,17 @@ parsing (browser/HTTP) user agent strings.") (define-public python-dbus (package (name "python-dbus") - (version "1.2.16") + (version "1.2.18") (source (origin (method url-fetch) (uri (string-append "https://dbus.freedesktop.org/releases/dbus-python/" "dbus-python-" version ".tar.gz")) (sha256 - (base32 "196m5rk3qzw5nkmgzjl7wmq0v7vpwfhh8bz2sapdi5f9hqfqy8qi")))) + (base32 "0q3jrw515z98mqdk9x822nd95rky455zz9876f1nqna5igkd3gcj")))) (build-system gnu-build-system) (native-inputs - `(("pkg-config" ,pkg-config))) + (list pkg-config)) (inputs `(("python" ,python-wrapper) ("dbus-glib" ,dbus-glib))) @@ -9030,6 +8874,7 @@ parsing (browser/HTTP) user agent strings.") (description "python-dbus provides bindings for libdbus, the reference implementation of D-Bus.") (home-page "https://www.freedesktop.org/wiki/Software/DBusBindings/") + (properties `((python2-variant . ,(delay python2-dbus)))) (license license:expat))) (define-public python2-dbus @@ -9037,8 +8882,9 @@ implementation of D-Bus.") (name "python2-dbus") (inputs `(("python" ,python-2) ,@(alist-delete "python" - (package-inputs python-dbus) - equal?))))) + (package-inputs python-dbus)))) + (arguments + `(#:configure-flags '("PYTHON_VERSION=2"))))) (define-public python-dbus-next (package @@ -9056,7 +8902,7 @@ implementation of D-Bus.") "1ahaz52kny1p9xxv6phvk4iq56rg8li390wywlxf2yslaij1188h")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/altdesktop/python-dbus-next") (synopsis "Zero-dependency DBus library for Python with asyncio support") (description @@ -9078,8 +8924,8 @@ mobile environments.") "0z8rrv9rsg1r2qgh2dxj3dfj5xnki98kgi3w839kqby4a26i1yik")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; tests depend on system state - (native-inputs - `(("python-dbus" ,python-dbus))) + (propagated-inputs + (list python-dbus)) (home-page "https://bitbucket.org/takluyver/pynotify2") (synopsis "Python interface to D-Bus notifications") (description @@ -9117,7 +8963,7 @@ the GObject Introspection bindings to libnotify for non-GTK applications.") (replace 'check (lambda _ (invoke "./convert-py3k")))))) (propagated-inputs - `(("python-soupsieve" ,python-soupsieve))) + (list python-soupsieve)) (home-page "https://www.crummy.com/software/BeautifulSoup/bs4/") (synopsis @@ -9149,10 +8995,15 @@ converts incoming documents to Unicode and outgoing documents to UTF-8.") (base32 "1k70gpn2d3vgdyxbdy536dgm4kchcraxz6lmgsfg3324iy2789q5")))) (build-system python-build-system) - (arguments `(#:tests? #f)) - ;;XXX: 2 tests fail currently despite claming they were to be - ;;skipped. Also, beautifulsoup4 may depend on this in the future, so we - ;;don't want to create a circular dependency. + (arguments + ;;XXX: 2 tests fail currently despite claming they were to be + ;;skipped. Also, beautifulsoup4 may depend on this in the future, so we + ;;don't want to create a circular dependency. + (list #:tests? #f + #:phases + #~(modify-phases %standard-phases + ;; Circular dependency with python-beautifulsoup4. + (delete 'sanity-check)))) (home-page "https://github.com/facelessuser/soupsieve") (synopsis "CSS selector library") (description @@ -9178,9 +9029,8 @@ some are not yet implemented).") (base32 "1apgqxngi1216h1cyvrvj9gy3wf45mh1lz4n76j26jf3k36bm1br")))) (propagated-inputs - `(("python2-backports-functools-lru-cache" - ,python2-backports-functools-lru-cache) - ,@(package-propagated-inputs base)))))) + (modify-inputs (package-propagated-inputs base) + (prepend python2-backports-functools-lru-cache)))))) (define-public python-netifaces (package @@ -9226,9 +9076,9 @@ interfaces in an easy and portable manner.") #t))))) ;; python-decorator is needed at runtime. (propagated-inputs - `(("python-decorator" ,python-decorator))) + (list python-decorator)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://networkx.github.io/") (synopsis "Python module for creating and manipulating graphs and networks") (description @@ -9252,8 +9102,7 @@ of the structure, dynamics, and functions of complex networks.") (arguments `(#:python ,python-2)) (native-inputs - `(("python-nose" ,python2-nose) - ("unzip" ,unzip)))))) + (list python2-nose unzip))))) (define-public python-datrie (package @@ -9268,10 +9117,8 @@ of the structure, dynamics, and functions of complex networks.") "0pbn32flkrpjiwfcknmj6398qa81ba783kbcvwan3kym73v0hnsj")))) (build-system python-build-system) (native-inputs - `(("python-cython" ,python-cython) - ("python-hypothesis" ,python-hypothesis) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-cython python-hypothesis python-pytest + python-pytest-runner)) (home-page "https://github.com/kmike/datrie") (synopsis "Fast, efficiently stored trie for Python") (description @@ -9292,10 +9139,9 @@ Python.") "0f1db9zp0rsfzxvaz55xwh8h5rfdgr9a2a715g06ic8nknsdq4nb")))) (build-system python-build-system) (propagated-inputs - `(("python-docutils" ,python-docutils) - ("python-pyparsing" ,python-pyparsing))) + (list python-docutils python-pyparsing)) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) (home-page "https://github.com/willu47/amply") (synopsis "Load and manipulate AMPL/GLPK data as Python data structures") (description @@ -9316,7 +9162,7 @@ structures.") "1dammrg0f1v0r028i3rpxbf2bsyxmjq0q6ihb4x2wsdki44z3bxj")))) (build-system python-build-system) (propagated-inputs - `(("python-amply" ,python-amply))) + (list python-amply)) (home-page "https://github.com/coin-or/pulp") (synopsis "Linear Programming modeler") (description @@ -9362,13 +9208,10 @@ algorithm.") (arguments `(#:test-target "pytest")) (propagated-inputs - `(("python-diff-match-patch" ,python-diff-match-patch))) + (list python-diff-match-patch)) (native-inputs - `(("python-flaky" ,python-flaky) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-runner" ,python-pytest-runner) - ("python-pytest-timeout" ,python-pytest-timeout))) + (list python-flaky python-pytest python-pytest-cov + python-pytest-runner python-pytest-timeout)) (home-page "https://github.com/spyder-ide/three-merge") (synopsis "Library for merging two strings with respect to a base one") (description @@ -9405,22 +9248,22 @@ approach.") "/bin/snakemake"))) #t))))) (propagated-inputs - `(("python-appdirs" ,python-appdirs) - ("python-configargparse" ,python-configargparse) - ("python-datrie" ,python-datrie) - ("python-docutils" ,python-docutils) - ("python-gitpython" ,python-gitpython) - ("python-jinja2" ,python-jinja2) - ("python-jsonschema" ,python-jsonschema) - ("python-nbformat" ,python-nbformat) - ("python-networkx" ,python-networkx) - ("python-psutil" ,python-psutil) - ("python-pulp" ,python-pulp) - ("python-pyyaml" ,python-pyyaml) - ("python-ratelimiter" ,python-ratelimiter) - ("python-requests" ,python-requests) - ("python-toposort" ,python-toposort) - ("python-wrapt" ,python-wrapt))) + (list python-appdirs + python-configargparse + python-datrie + python-docutils + python-gitpython + python-jinja2 + python-jsonschema + python-nbformat + python-networkx + python-psutil + python-pulp + python-pyyaml + python-ratelimiter + python-requests + python-toposort + python-wrapt)) (home-page "https://snakemake.readthedocs.io") (synopsis "Python-based execution environment for make-like workflows") (description @@ -9452,13 +9295,13 @@ SVG, EPS, PNG and terminal output.") (define-public python-seaborn (package (name "python-seaborn") - (version "0.11.1") + (version "0.11.2") (source (origin (method url-fetch) (uri (pypi-uri "seaborn" version)) (sha256 - (base32 "1b81p9s6li3b606ivgbynrh102fclwlw74m8qxzsii9pv6p8xrs4")) + (base32 "1xpl3zb945sihsiwm9q1yyx84sakk1phcg0fprj6i0j0dllfjifg")) (patches (search-patches "python-seaborn-kde-test.patch")))) (build-system python-build-system) (arguments @@ -9475,13 +9318,9 @@ SVG, EPS, PNG and terminal output.") (when tests? (invoke "pytest" "seaborn"))))))) (propagated-inputs - `(("python-pandas" ,python-pandas) - ("python-matplotlib" ,python-matplotlib) - ("python-numpy" ,python-numpy) - ("python-scipy" ,python-scipy))) + (list python-pandas python-matplotlib python-numpy python-scipy)) (native-inputs - `(("python-pytest" ,python-pytest) - ("xorg-server" ,xorg-server-for-tests))) + (list python-pytest xorg-server-for-tests)) (home-page "https://seaborn.pydata.org/") (synopsis "Statistical data visualization") (description @@ -9507,31 +9346,40 @@ and statistical routines from scipy and statsmodels.") (define-public python-mpmath (package - (name "python-mpmath") - (version "1.1.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "mpmath" version)) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1xlrcja213jpfhw25q1jl5pl10w1a2cc68x1c4mkicxsbzhan5zw")))) - (build-system python-build-system) - (native-inputs - `(("python-pytest" ,python-pytest))) - (arguments - '(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda _ - (invoke "python" "mpmath/tests/runtests.py" "-local")))))) - (home-page "https://mpmath.org") - (synopsis "Arbitrary-precision floating-point arithmetic in python") - (description - "@code{mpmath} can be used as an arbitrary-precision substitute for + (name "python-mpmath") + (version "1.2.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/fredrik-johansson/mpmath") + (commit "c6a35f9ee7c294bcf4e0517bc76b268843db9499"))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0ifw59fjjls3mas104rh0frilvab2fhk1dkjraxlqni5n9l676im")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'set-version + (lambda _ + (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" ,version) + ;; ZIP does not support timestamps before 1980. + (setenv "SOURCE_DATE_EPOCH" "315532800"))) + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv"))))))) + (native-inputs + (list python-pytest python-setuptools-scm)) + (home-page "https://mpmath.org") + (synopsis "Arbitrary-precision floating-point arithmetic in python") + (description + "@code{mpmath} can be used as an arbitrary-precision substitute for Python's float/complex types and math/cmath modules, but also does much more advanced mathematics.") - (license license:bsd-3))) + (license license:bsd-3))) (define-public python2-mpmath (package-with-python2 python-mpmath)) @@ -9548,7 +9396,7 @@ more advanced mathematics.") (base32 "0xd7q4l7v0f463diznjv4k9wlaks80pn9drdqmfifi7zx8qvybi6")))) (build-system python-build-system) (inputs - `(("mpfr" ,mpfr))) + (list mpfr)) (home-page "https://github.com/mdickinson/bigfloat") (synopsis "Arbitrary precision floating-point arithmetic for Python") (description @@ -9576,7 +9424,7 @@ multiprecision arithmetic.") (or (which "python3") (which "python")) "-c" "import sympy; sympy.test(\"/core\")")))))) (propagated-inputs - `(("python-mpmath" ,python-mpmath))) + (list python-mpmath)) (home-page "https://www.sympy.org/") (synopsis "Python library for symbolic mathematics") (description @@ -9645,11 +9493,9 @@ falling into the Python interpreter.") (setenv "DISPLAY" ":1") #t)))))) (native-inputs - `(("python-mock" ,python-mock) - ("python-setuptools-scm" ,python-setuptools-scm) - ("xorg-server" ,xorg-server))) + (list python-mock python-setuptools-scm xorg-server)) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://github.com/python-xlib/python-xlib") (synopsis "Python X11 client library") (description @@ -9674,7 +9520,7 @@ low-level X clients. It is written entirely in Python.") "171b7ip0hsq5qm83np40h3phlr36ym18w0lay0a8v08kvy3sy1jv")))) (build-system python-build-system) (native-inputs - `(("python-six" ,python-six))) ; required for conversion, not at run-time + (list python-six)) ; required for conversion, not at run-time (home-page "https://docs.python.org/3/library/functools.html#functools.singledispatch") (synopsis "Backport of singledispatch feature from Python 3.4") @@ -9731,7 +9577,14 @@ Python 2 and Python 3.") (license license:psfl))) (define-public python2-backports-csv - (package-with-python2 python-backports-csv)) + (package + (inherit (package-with-python2 python-backports-csv)) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; The sanity-check attempts attempts to import the non-existent + ;; module "backports". + (delete 'sanity-check)))))) (define-public python2-backports-shutil-get-terminal-size (package @@ -9751,11 +9604,9 @@ Python 2 and Python 3.") (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" (string-append "./build/lib:" - (getenv "PYTHONPATH"))) (invoke "py.test" "-v")))))) (native-inputs - `(("python2-pytest" ,python2-pytest))) + (list python2-pytest)) (home-page "https://github.com/chrippa/backports.shutil_get_terminal_size") (synopsis "Backport of Python 3.3's @code{shutil.get_terminal_size}") (description @@ -9829,11 +9680,9 @@ applications.") ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (inputs - `(("zeromq" ,zeromq))) + (list zeromq)) (native-inputs - `(("pkg-config" ,pkg-config) - ("python-cython" ,python-cython) - ("python-pytest" ,python-pytest))) + (list pkg-config python-cython python-pytest)) (home-page "https://github.com/zeromq/pyzmq") (synopsis "Python bindings for 0MQ") (description @@ -9854,7 +9703,7 @@ applications.") (arguments `(#:tests? #f)) ; no tests in PyPI release and no setup.py in GitHub (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/corenting/immutabledict") (synopsis "Immutable wrapper around dictionaries") (description @@ -9882,7 +9731,7 @@ replacement for dictionaries where immutability is desired.") (when tests? (invoke "python" "-m" "pytest"))))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/carpedm20/emoji/") (synopsis "Emoji terminal output for Python") (description "This package provides Emoji terminal output for Python. The @@ -9929,8 +9778,7 @@ PEP 8.") "04kyh9hkpyc8jzj16d1kkk29b5n8miqdvbs0zm035n1z5z5kx6hz")))) (build-system python-build-system) (propagated-inputs - `(("python-flake8" ,python-flake8) - ("python-flake8-polyfill" ,python-flake8-polyfill))) + (list python-flake8 python-flake8-polyfill)) (home-page "https://github.com/PyCQA/pep8-naming") (synopsis "Check PEP-8 naming conventions") (description @@ -9954,9 +9802,7 @@ plugin for flake8 to check PEP-8 naming conventions.") (invoke "pytest") #t)))))) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-testpath" ,python-testpath))) + (list python-mock python-pytest python-testpath)) (properties `((python2-variant . ,(delay python2-pep517)))))) ;; Skip the tests so we don't create a cyclical dependency with pytest. @@ -9979,11 +9825,10 @@ plugin for flake8 to check PEP-8 naming conventions.") (method url-fetch) (uri (pypi-uri "pyflakes" version)) (sha256 - (base32 - "1ny10364ciqh4ripasj4zzv4145l21l3s85m3qlrvfq5pk58xg7m")))) + (base32 + "1ny10364ciqh4ripasj4zzv4145l21l3s85m3qlrvfq5pk58xg7m")))) (build-system python-build-system) - (home-page - "https://github.com/pyflakes/pyflakes") + (home-page "https://github.com/PyCQA/pyflakes") (synopsis "Passive checker of Python programs") (description "Pyflakes statically checks Python source code for common errors.") @@ -10001,28 +9846,28 @@ plugin for flake8 to check PEP-8 naming conventions.") (uri (pypi-uri "pyflakes" version)) (sha256 (base32 - "1j3zqbiwkyicvww499bblq33x0bjpzdrxajhaysr7sk7x5gdgcim")))))) + "1j3zqbiwkyicvww499bblq33x0bjpzdrxajhaysr7sk7x5gdgcim")) + (patches + (search-patches "python-pyflakes-test-location.patch")))))) (define-public python-mccabe (package (name "python-mccabe") (version "0.6.1") (source - (origin - (method url-fetch) - (uri (pypi-uri "mccabe" version)) - (sha256 - (base32 - "07w3p1qm44hgxf3vvwz84kswpsx6s7kvaibzrsx5dzm0hli1i3fx")))) + (origin + (method url-fetch) + (uri (pypi-uri "mccabe" version)) + (sha256 + (base32 + "07w3p1qm44hgxf3vvwz84kswpsx6s7kvaibzrsx5dzm0hli1i3fx")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest-bootstrap) - ("python-pytest-runner" ,python-pytest-runner))) - (home-page "https://github.com/flintwork/mccabe") + (list python-toml python-pytest-bootstrap python-pytest-runner)) + (home-page "https://github.com/PyCQA/mccabe") (synopsis "McCabe checker, plugin for flake8") - (description - "This package provides a Flake8 plug-in to compute the McCabe cyclomatic -complexity of Python source code.") + (description "This package provides a Flake8 plug-in to compute the McCabe +cyclomatic complexity of Python source code.") (license license:expat))) (define-public python2-mccabe @@ -10047,13 +9892,10 @@ complexity of Python source code.") (add-installed-pythonpath inputs outputs) (invoke "pytest" "-v")))))) (propagated-inputs - `(("python-pycodestyle" ,python-pycodestyle) - ("python-entrypoints" ,python-entrypoints) - ("python-pyflakes" ,python-pyflakes) - ("python-mccabe" ,python-mccabe))) + (list python-pycodestyle python-entrypoints python-pyflakes + python-mccabe)) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (home-page "https://gitlab.com/pycqa/flake8") (synopsis "The modular source code checker: pep8, pyflakes and co") @@ -10083,10 +9925,8 @@ complexity of Python source code.") (base32 "0fvcrsbyzjpcli8ldbpsdbpmf238nkvwc1dy4hy82lf63rvfinma")))) (propagated-inputs - `(("python-pycodestyle" ,python-pycodestyle-2.6) - ("python-entrypoints" ,python-entrypoints) - ("python-pyflakes" ,python-pyflakes-2.2) - ("python-mccabe" ,python-mccabe))))) + (list python-pycodestyle-2.6 python-entrypoints python-pyflakes-2.2 + python-mccabe)))) (define-public python-flake8-bugbear (package @@ -10110,11 +9950,9 @@ complexity of Python source code.") (("def test_does_not_crash_on_any_valid_code") "def _test_does_not_crash_on_any_valid_code"))))))) (native-inputs - `(("python-hypothesis" ,python-hypothesis) - ("python-hypothesmith" ,python-hypothesmith))) + (list python-hypothesis python-hypothesmith)) (propagated-inputs - `(("python-attrs" ,python-attrs) - ("python-flake8" ,python-flake8))) + (list python-attrs python-flake8)) (home-page "https://github.com/PyCQA/flake8-bugbear") (synopsis "Flake8 plugin for finding likely bugs and design problems in your program") @@ -10137,9 +9975,7 @@ in pyflakes and pycodestyle.") "0dzaw8jr7yhlabxhrblnrizxx17xa9ngjnbr1kidg5lapq6b9q1y")))) (build-system python-build-system) (propagated-inputs - `(("python-flake8" ,python-flake8) - ("python-pycodestyle" ,python-pycodestyle) - ("python-six" ,python-six))) + (list python-flake8 python-pycodestyle python-six)) (home-page "https://github.com/planetlabs/flake8-continuation") (synopsis "Flake8 Line Continuation Plugin") (description "A Flake8 plugin that checks for the line continuation @@ -10164,8 +10000,7 @@ These should be used in preference to using a backslash for line continuation. (base32 "1v0y29xlmbr2q12a4nnpm1dm9aw1mjiys1x8jif4z8c90d63cqm6")))) (build-system python-build-system) (propagated-inputs - `(("python-attrs" ,python-attrs) - ("python-more-itertools" ,python-more-itertools))) + (list python-attrs python-more-itertools)) (home-page "https://github.com/keisheiled/flake8-implicit-str-concat") (synopsis "Flake8 plugin to encourage correct string literal concatenation") (description @@ -10199,17 +10034,11 @@ unnecessary plus operators for explicit string literal concatenation.") (substitute* "setup.cfg" (("\\[pytest\\]") "[tool:pytest]")) - - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) (invoke "py.test" "-v")))))) + (propagated-inputs + (list python-flake8)) (native-inputs - `(("python-flake8" ,python-flake8) - ("python-mock" ,python-mock) - ("python-pep8" ,python-pep8) - ("python-pycodestyle" ,python-pycodestyle) - ("python-pytest" ,python-pytest))) + (list python-mock python-pep8 python-pycodestyle python-pytest)) (home-page "https://gitlab.com/pycqa/flake8-polyfill") (synopsis "Polyfill package for Flake8 plugins") (description @@ -10232,9 +10061,7 @@ plugins that intend to support Flake8 2.x and 3.x simultaneously.") (base32 "05k5kkvyk6fdmvnacxfzypk74vbl3pmva13dqg1aljfwnxsc7yjs")))) (build-system python-build-system) (propagated-inputs - `(("python-flake8" ,python-flake8) - ("python-pycodestyle" ,python-pycodestyle) - ("python-six" ,python-six))) + (list python-flake8 python-pycodestyle python-six)) (home-page "https://github.com/jbkahn/flake8-print") (synopsis "Print statement checker plugin for Flake8") (description @@ -10245,19 +10072,17 @@ files.") (define-public python-flake8-pyi (package (name "python-flake8-pyi") - (version "20.5.0") + (version "20.10.0") (source (origin (method url-fetch) (uri (pypi-uri "flake8-pyi" version)) (sha256 (base32 - "1zpq4s9kp8w95pccmhhyyx1ff2zhnidcf1zb3xs46lzcx9plvnzk")))) + "0b27n2pmrxcc7nva4wp2i7mrag0fnq0firvhg1ljq593a45b5qyf")))) (build-system python-build-system) (propagated-inputs - `(("python-attrs" ,python-attrs) - ("python-flake8" ,python-flake8) - ("python-pyflakes" ,python-pyflakes))) + (list python-attrs python-flake8 python-pyflakes)) (home-page "https://github.com/ambv/flake8-pyi") (synopsis "Flake8 plugin that provides specializations for type hinting stub files") @@ -10303,7 +10128,7 @@ lints.") "0ph5s6lxgpzz4an0ax6s5xjqypqmngwr5b1i0h9pqhzghplic49z")))) (build-system python-build-system) (propagated-inputs - `(("python-flake8" ,python-flake8))) + (list python-flake8)) (home-page "https://github.com/zheller/flake8-quotes/") (synopsis "Flake8 lint for quotes") (description "This package provides a Flake8 lint for quotes.") @@ -10322,7 +10147,7 @@ lints.") "05arm0sch3r8248035kilmf01z0mxsahw6vpbbz0d343zy8m8k3f")))) (build-system python-build-system) (propagated-inputs - `(("python-pycodestyle" ,python-pycodestyle))) + (list python-pycodestyle)) (home-page "https://github.com/schlamar/flake8-todo") (synopsis "TODO notes checker, plugin for flake8") (description @@ -10342,7 +10167,7 @@ TODO notes checker plugin for flake8.") (base32 "0nzr057dbmgprp4a52ymafdkdd5zp2wcqf42913xc7hhvvdbj338")))) (build-system python-build-system) (propagated-inputs - `(("python-pyflakes" ,python-pyflakes))) + (list python-pyflakes)) (home-page "https://github.com/myint/autoflake") (synopsis "Removes unused imports and unused variables") (description @@ -10367,8 +10192,7 @@ It also removes useless @code{pass} statements.") "0vkmsh0x480rni51lhyvigfdf06b9247z868pk3bal1wnnfl58sr")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose) - ("python-cython" ,python-cython))) + (list python-nose python-cython)) (home-page "https://github.com/lepture/mistune") (synopsis "Markdown parser in pure Python") (description "This package provides a fast markdown parser in pure @@ -10378,6 +10202,20 @@ Python.") (define-public python2-mistune (package-with-python2 python-mistune)) +;; 2.0 is not released yet, but some packages have started using it. +(define-public python-mistune-next + (package + (inherit python-mistune) + (name "python-mistune-next") + (version "2.0.0rc1") + (source (origin + (method url-fetch) + (uri (pypi-uri "mistune" version)) + (sha256 + (base32 + "1nd7iav1ixh9hlj4hxn6lmpava88d86ys8rqm30wgvr7gjlxnas5")))) + (native-inputs (list python-nose)))) + (define-public python-markdown (package (name "python-markdown") @@ -10391,8 +10229,7 @@ Python.") "0jbs73nincha8fkfxx267sfxac6pl0ckszjbqbb8gk4dhs8v9d9i")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose) - ("python-pyyaml" ,python-pyyaml))) + (list python-nose python-pyyaml)) (home-page "https://python-markdown.github.io/") (synopsis "Python implementation of Markdown") (description @@ -10429,7 +10266,7 @@ markdown_py is also provided to convert Markdown files to HTML.") "0ra31k10v3629xq0kdn8lwmfbi97anmk48r03yvh7mks0kq96hg6")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (arguments `(#:phases (modify-phases %standard-phases @@ -10495,8 +10332,7 @@ pseudo terminal (pty), and interact with both the process and its pty.") (invoke "make" "test")))))) (build-system python-build-system) (native-inputs - `(("python-coverage" ,python-coverage) - ("which" ,which))) + (list python-coverage which)) (synopsis "Simple testing framework for command line applications") (description "Cram is a functional testing framework for command line applications. @@ -10539,7 +10375,7 @@ output.") (arguments `(#:tests? #f)) ; Tests require more dependencies. (native-inputs - `(("python-sphinx" ,python-sphinx))) + (list python-sphinx)) (home-page "https://github.com/jackmaney/python-stdlib-list") (synopsis "Python Standard Libraries") (description "This package contains a list of Python Standard Libraries.") @@ -10579,9 +10415,7 @@ add functionality and customization to your projects with their own plugins.") "1mq9kdzhcsp96bhv7smnrpdg1s4z5wh70bsl99c0jmcrahqdisqq")))) (build-system python-build-system) (native-inputs - `(("unzip" ,unzip) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list unzip python-pytest python-pytest-runner)) (home-page "https://github.com/fonttools/fonttools") (synopsis "Tools to manipulate font files") (description @@ -10682,10 +10516,9 @@ third-party code.") "1g2cdhdqrb6m7655qp61pn61pwj1ql61cdzhr2jvl3w4i8877ddr")))) (build-system python-build-system) (inputs - `(("fuse" ,fuse) - ("attr" ,attr))) + (list fuse attr)) (native-inputs - `(("pkg-config" ,pkg-config))) + (list pkg-config)) (synopsis "Python bindings for FUSE") (description "Python-LLFUSE is a set of Python bindings for the low level FUSE API.") @@ -10720,16 +10553,9 @@ third-party code.") (modify-phases %standard-phases (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-v" "test"))))))) - (native-inputs - `(("python-pytest" ,python-pytest))) + (invoke "pytest" "-v" "test")))))) + (native-inputs + (list python-pytest)) (synopsis "MessagePack (de)serializer") (description "MessagePack is a fast, compact binary serialization format, suitable for similar data to JSON. This package provides CPython bindings for @@ -10895,9 +10721,9 @@ Supported netlink families and protocols include: (filter (lambda (f) (grep "from test." f)) test-files))))))))) (propagated-inputs - `(("python-lark-parser" ,python-lark-parser))) + (list python-lark-parser)) (native-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://github.com/vaidik/commentjson") (synopsis "Python library for adding comments to JSON files") (description "Comment JSON is a Python package that helps you create JSON @@ -10930,9 +10756,7 @@ similar to the Python standard library's @code{json} module.") (add-installed-pythonpath inputs outputs) (invoke "pytest"))))))) (native-inputs - `(("python-commentjson" ,python-commentjson) - ("python-packaging" ,python-packaging) - ("python-pytest" ,python-pytest))) + (list python-commentjson python-packaging python-pytest)) (home-page "https://github.com/sarugaku/resolvelib") (synopsis "Abstract dependencies resolver") (description "The ResolveLib library provides a @code{Resolver} class that @@ -11029,9 +10853,9 @@ Unicode-aware. It is not intended as an end-user tool.") (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? - (setenv "PYTHONPATH" + (setenv "GUIX_PYTHONPATH" (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) + (getenv "GUIX_PYTHONPATH"))) (invoke "nosetests" "-v"))))))) (native-inputs `(("nose" ,python-nose))) @@ -11107,7 +10931,7 @@ printing of sub-tables by specifying a row range.") ;; Tries to open an outgoing connection. "not test_ssl_outgoing")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/dabeaz/curio") (synopsis "Coroutine-based library for concurrent Python") (description @@ -11170,15 +10994,11 @@ tasks, sockets, files, locks, and queues.") (string-append "--hdf5=" (assoc-ref inputs "hdf5")))))))) (propagated-inputs - `(("python-numexpr" ,python-numexpr) - ("python-numpy" ,python-numpy))) + (list python-numexpr python-numpy)) (native-inputs - `(("python-cython" ,python-cython) - ("pkg-config" ,pkg-config))) + (list python-cython pkg-config)) (inputs - `(("hdf5" ,hdf5-1.10) - ("bzip2" ,bzip2) - ("zlib" ,zlib))) + (list hdf5-1.10 bzip2 zlib)) (home-page "https://www.pytables.org/") (synopsis "Hierarchical datasets for Python") (description "PyTables is a package for managing hierarchical datasets and @@ -11203,9 +11023,7 @@ designed to efficiently cope with extremely large amounts of data.") (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - `(("python-curio" ,python-curio) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-curio python-pytest python-pytest-cov)) (home-page "https://github.com/python-trio/sniffio") (synopsis "Detect which async library a program is running under") (description "This package detects which async library a program is @@ -11227,11 +11045,9 @@ asyncio.") "04lppqydxm0f3f3x0l8hj7v0j6d8syj34jc37yzqwqcyqsnaga81")))) (build-system python-build-system) (propagated-inputs - `(("python-pytest" ,python-pytest) - ("python-black" ,python-black) - ("python-toml" ,python-toml))) + (list python-pytest python-black python-toml)) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) (home-page "https://github.com/shopkeep/pytest-black") (synopsis "Pytest plugin to enable format checking with black") (description @@ -11252,12 +11068,12 @@ Python code formatter \"black\".") "1g15jyx33vkxavv9hwv275cs4g9bp2i1y942raw3fxamq8kbaml1")))) (build-system python-build-system) (propagated-inputs - `(("python-pygments" ,python-pygments) - ("python-pytest" ,python-pytest) - ("python-pytest-black" ,python-pytest-black) - ("python-pytest-cov" ,python-pytest-cov) - ("python-setuptools" ,python-setuptools) - ("python-testpath" ,python-testpath))) + (list python-pygments + python-pytest + python-pytest-black + python-pytest-cov + python-setuptools + python-testpath)) (home-page "https://github.com/flying-sheep/get_version") (synopsis "Version helper in the spirit of versioneer") (description @@ -11292,8 +11108,7 @@ your package is installed, via @code{pkg_resources} (part of "not test_infer_zip_from_disk" " and not test_infer_tar_from_disk")))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-benchmark" ,python-pytest-benchmark))) + (list python-pytest python-pytest-benchmark)) (home-page "https://github.com/h2non/filetype.py") (synopsis "Infer file type and MIME type of any file/buffer") (description "@code{filetype} is a small and dependency free Python @@ -11321,8 +11136,7 @@ signature of a file or buffer.") (add-installed-pythonpath inputs outputs) (invoke "pytest"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-xprocess" ,python-pytest-xprocess))) + (list python-pytest python-pytest-xprocess)) (home-page "https://github.com/pallets/cachelib") (synopsis "Collection of cache libraries") (description "Cachelib is a library extracted from @code{werkzeug} which @@ -11342,11 +11156,8 @@ provides a collection of cache libraries in the same API interface.") "06qhp0g543dy98vpa41hwdalvdbsjfc3ldk474yr9sd75mhl8jh3")))) (build-system python-build-system) (propagated-inputs - `(("python-get-version" ,python-get-version) - ("python-pytest" ,python-pytest) - ("python-pytest-black" ,python-pytest-black) - ("python-pytest-cov" ,python-pytest-cov) - ("python-setuptools" ,python-setuptools))) + (list python-get-version python-pytest python-pytest-black + python-pytest-cov python-setuptools)) (home-page "https://github.com/flying-sheep/legacy-api-wrap") (synopsis "Legacy API wrapper") (description "This module defines a decorator to wrap legacy APIs. The @@ -11365,7 +11176,7 @@ primary use case is APIs defined before keyword-only parameters existed.") (base32 "1805svvb7xjm4sf1j7b6nc3409x37pd1xmabfwwjf1ldkzwgxhfb")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://github.com/Mimino666/langdetect") (synopsis "Language detection library") (description @@ -11408,7 +11219,7 @@ suitable for a wide range of protocols based on the ASN.1 specification.") "0pp6dcagd8c2c9qx3lahc1rdwlnmm0y0siqr5icjq2r32b3q8pwh")))) (build-system python-build-system) (propagated-inputs - `(("python-pyasn1" ,python-pyasn1))) + (list python-pyasn1)) (home-page "https://sourceforge.net/projects/pyasn1/") (synopsis "ASN.1 codec implementations") (description @@ -11453,10 +11264,8 @@ implementations of ASN.1-based codecs and protocols.") (base32 "1k88a1azmyvp2ab6qcf2i40dig5abhyn7cmlyhmwwh8kr3syvma0")))) (build-system python-build-system) (propagated-inputs - `(("python-bitstruct" ,python-bitstruct) - ("python-diskcache" ,python-diskcache) - ("python-prompt-toolkit" ,python-prompt-toolkit) - ("python-pyparsing" ,python-pyparsing))) + (list python-bitstruct python-diskcache python-prompt-toolkit + python-pyparsing)) (home-page "https://github.com/eerimoq/asn1tools") (synopsis "ASN.1 parsing, encoding and decoding") (description "This package provides ASN.1 parsing, encoding and decoding @@ -11559,12 +11368,11 @@ specification.") (add-installed-pythonpath inputs outputs) (invoke "pytest" "sasstests.py")))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-werkzeug" ,python-werkzeug))) + (list python-pytest python-werkzeug)) (inputs - `(("libsass" ,libsass))) + (list libsass)) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://sass.github.io/libsass-python/") (synopsis "Straightforward binding of libsass for Python") (description @@ -11586,6 +11394,7 @@ is binding LibSass.") (build-system python-build-system) (arguments `(#:tests? #f)) ;circular dependency with python-aiohttp + (propagated-inputs (list python-idna)) (home-page "https://github.com/aio-libs/idna-ssl") (synopsis "Patch @code{ssl.match_hostname} for Unicode(idna) domains support") (description "Patch @code{ssl.match_hostname} for Unicode(idna) @@ -11754,10 +11563,9 @@ applications from a list of lists of strings. It supports multi-line rows.") (replace 'check (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (inputs - `(("libarchive" ,libarchive))) + (list libarchive)) (home-page "https://github.com/Changaco/python-libarchive-c") (synopsis "Python interface to libarchive") (description @@ -11831,8 +11639,7 @@ libmagic."))) (delete-file "lib/debian/tests/test_debfile.py") #t))))) (propagated-inputs - `(("python-six" ,python-six) - ("python-chardet" ,python-chardet))) + (list python-six python-chardet)) (synopsis "Debian package related modules") (description ;; XXX: Use @enumerate instead of @itemize to work around @@ -11866,10 +11673,9 @@ Debian-related files, such as: "06dpbsq61ja9r89wpa2pzdii47qh3xri9ajdrgn1awfl102znchb")))) (build-system python-build-system) (propagated-inputs - `(("python-pathlib" ,python-pathlib) - ("python-six" ,python-six))) + (list python-pathlib python-six)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "http://py.errorist.io/json-spec") (synopsis "JSON Schema, JSON Pointer and JSON Reference for Python") @@ -11898,15 +11704,14 @@ JSON Reference and JSON Pointer.") (when tests? (invoke "pytest" "-vv" "-m" "not benchmark"))))))) (native-inputs - `(("python-colorama" ,python-colorama) - ("python-json-spec" ,python-json-spec) - ("python-jsonschema" ,python-jsonschema) - ("python-pylint" ,python-pylint) - ("python-pytest" ,python-pytest-6) - ("python-pytest-benchmark" - ,python-pytest-benchmark) - ("python-pytest-cache" ,python-pytest-cache) - ("python-validictory" ,python-validictory))) + (list python-colorama + python-json-spec + python-jsonschema + python-pylint + python-pytest + python-pytest-benchmark + python-pytest-cache + python-validictory)) (home-page "https://github.com/horejsek/python-fastjsonschema") (synopsis @@ -11939,16 +11744,14 @@ drafts 04, 06 and 07.") (when tests? (invoke "pytest" "-vv"))))))) (propagated-inputs - `(("python-ipython-genutils" ,python-ipython-genutils) - ("python-jsonschema" ,python-jsonschema) - ("python-jupyter-core" ,python-jupyter-core) - ("python-traitlets" ,python-traitlets))) + (list python-ipython-genutils python-jsonschema python-jupyter-core + python-traitlets)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-fastjsonschema" ,python-fastjsonschema) ; This is only active - ; when setting NBFORMAT_VALIDATOR="fastjsonschema", so include it for - ; testing only. - ("python-testpath" ,python-testpath))) + (list python-pytest + python-fastjsonschema ; This is only active + ; when setting NBFORMAT_VALIDATOR="fastjsonschema", so include it for + ; testing only. + python-testpath)) (home-page "https://jupyter.org") (synopsis "Jupyter Notebook format") (description "This package provides the reference implementation of the @@ -11967,13 +11770,9 @@ Jupyter Notebook format and Python APIs for working with notebooks.") (base32 "0jqa8f1ni10cyf4h7sjpf8mbqlcbkyvmsnli77qrxdcxvc7m4k1w")))) (build-system python-build-system) (propagated-inputs - `(("python-webencodings" ,python-webencodings) - ("python-six" ,python-six))) + (list python-webencodings python-six)) (native-inputs - `(("python-datrie" ,python-datrie) - ("python-genshi" ,python-genshi) - ("python-lxml" ,python-lxml) - ("python-pytest" ,python-pytest))) + (list python-datrie python-genshi python-lxml python-pytest)) (home-page "https://github.com/mozilla/bleach") (synopsis "Whitelist-based HTML-sanitizing tool") (description "Bleach is an easy whitelist-based HTML-sanitizing tool.") @@ -12033,9 +11832,9 @@ functions to find and load entry points.") "09bx1ln1bwa00917dndlgs4k589h8qx2x080xch5m58p92kjwkd1")))) (build-system python-build-system) (propagated-inputs - `(("python-sexpdata" ,python-sexpdata))) + (list python-sexpdata)) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/tkf/python-epc") (synopsis "Remote procedure call (RPC) stack for Emacs Lisp and Python") (description @@ -12059,8 +11858,7 @@ from elisp.") ;; repository require online data. `(#:tests? #f)) (propagated-inputs - `(("python-requests" ,python-requests) - ("python-simplejson" ,python-simplejson))) + (list python-requests python-simplejson)) (home-page "https://github.com/MicroPyramid/forex-python") (synopsis "Foreign exchange rates and currency conversion") (description @@ -12157,10 +11955,10 @@ time.") (setenv "HOME" "/tmp") (invoke "pytest" "-vv"))))))) (inputs - `(("pandoc" ,pandoc) - ;; XXX: Disabled, needs substitute*. - ;;("inkscape" ,inkscape) - )) + (list pandoc + ;; XXX: Disabled, needs substitute*. + ;;("inkscape" ,inkscape) + )) (native-inputs `(("python-ipykernel" ,python-ipykernel) ;; XXX: Disabled, not in guix. @@ -12168,52 +11966,54 @@ time.") ("python-pytest" ,python-pytest) ("python-pytest-cov" ,python-pytest-cov) ("python-pytest-dependency" ,python-pytest-dependency) - ("texlive" ,(texlive-union (list texlive-adjustbox - texlive-amsfonts/patched + ("texlive" ,(texlive-updmap.cfg (list texlive-adjustbox + texlive-amsfonts texlive-booktabs texlive-caption texlive-eurosym texlive-fonts-rsfs texlive-generic-ulem - texlive-iftex + texlive-generic-iftex texlive-jknappen texlive-latex-amsmath texlive-latex-enumitem texlive-latex-fancyvrb texlive-latex-float - texlive-latex-fontspec + texlive-fontspec texlive-latex-geometry - texlive-latex-hyperref + texlive-grffile + texlive-hyperref texlive-latex-jknapltx texlive-latex-ms - texlive-latex-oberdiek + texlive-oberdiek texlive-latex-parskip texlive-latex-trimspaces texlive-latex-upquote texlive-latex-ucs texlive-lm texlive-mathpazo + texlive-stringenc texlive-tcolorbox texlive-titling texlive-tools texlive-xcolor texlive-zapfding))))) (propagated-inputs - `(("python-bleach" ,python-bleach) - ("python-defusedxml" ,python-defusedxml) - ("python-entrypoints" ,python-entrypoints) - ("python-jinja2" ,python-jinja2) - ("python-jupyter-core" ,python-jupyter-core) - ("python-mistune" ,python-mistune) - ("python-nbclient" ,python-nbclient) - ("python-nbformat" ,python-nbformat) - ("python-pandocfilters" ,python-pandocfilters) - ("python-pygments" ,python-pygments) - ("python-jupyterlab-pygments" ,python-jupyterlab-pygments) - ("python-testpath" ,python-testpath) - ("python-traitlets" ,python-traitlets) - ;; Required, even if [serve] is not used. - ("python-tornado" ,python-tornado-6))) + (list python-bleach + python-defusedxml + python-entrypoints + python-jinja2 + python-jupyter-core + python-mistune + python-nbclient + python-nbformat + python-pandocfilters + python-pygments + python-jupyterlab-pygments + python-testpath + python-traitlets + ;; Required, even if [serve] is not used. + python-tornado-6)) (home-page "https://jupyter.org") (synopsis "Converting Jupyter Notebooks") (description "The @code{nbconvert} tool, @{jupyter nbconvert}, converts @@ -12245,6 +12045,18 @@ convert an @code{.ipynb} notebook file into various static formats including: (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'use-our-home-for-tests + (lambda _ + ;; The 'get_patch_env' function in this file reads: + ;; 'HOME': cls.home_dir + ;; but for some reason, that definition of HOME is not what the + ;; GLib/GIO trash mechanism honors, which would cause test + ;; failures. Instead, set 'HOME' here to an existing directory + ;; and let the tests honor it. + (substitute* "notebook/tests/launchnotebook.py" + (("'HOME': .*," all) + (string-append "# " all "\n"))) + (setenv "HOME" (getcwd)))) (replace 'check (lambda* (#:key tests? inputs outputs #:allow-other-keys) ;; These tests require a browser @@ -12254,35 +12066,32 @@ convert an @code{.ipynb} notebook file into various static formats including: ;; Some tests do not expect all files to be installed in the ;; same directory, but JUPYTER_PATH contains multiple entries. (unsetenv "JUPYTER_PATH") - ;; Some tests need HOME - (setenv "HOME" "/tmp") - (with-directory-excursion "/tmp" - (invoke "pytest" "-vv" - ;; TODO: This tests fails because nbconvert does not - ;; list "python" as a format. - "-k" "not test_list_formats")))))))) - (propagated-inputs - `(("python-argon2-cffi" ,python-argon2-cffi) - ("python-ipykernel" ,python-ipykernel) - ("python-ipython-genutils" ,python-ipython-genutils) - ("python-jinja2" ,python-jinja2) - ("python-jupyter-client" ,python-jupyter-client) - ("python-jupyter-core" ,python-jupyter-core) - ("python-nbconvert" ,python-nbconvert) - ("python-nbformat" ,python-nbformat) - ("python-prometheus-client" ,python-prometheus-client) - ("python-pyzmq" ,python-pyzmq) - ("python-send2trash" ,python-send2trash) - ("python-terminado" ,python-terminado) - ("python-tornado" ,python-tornado-6) - ("python-traitlets" ,python-traitlets))) - (native-inputs - `(("python-coverage" ,python-coverage) - ("python-nbval" ,python-nbval) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-requests" ,python-requests) - ("python-requests-unixsocket" ,python-requests-unixsocket))) + (invoke "pytest" "-vv" + ;; TODO: This tests fails because nbconvert does not + ;; list "python" as a format. + "-k" "not test_list_formats"))))))) + (propagated-inputs + (list python-argon2-cffi + python-ipykernel + python-ipython-genutils + python-jinja2 + python-jupyter-client + python-jupyter-core + python-nbconvert + python-nbformat + python-prometheus-client + python-pyzmq + python-send2trash + python-terminado + python-tornado-6 + python-traitlets)) + (native-inputs + (list python-coverage + python-nbval + python-pytest + python-pytest-cov + python-requests + python-requests-unixsocket)) (home-page "https://jupyter.org/") (synopsis "Web-based notebook environment for interactive computing") (description @@ -12303,7 +12112,7 @@ interactive computing.") "1ismyaxbv9d56yqqqb8xl58hg0iq0bbyy014a53y1g3hfbc8g7q7")))) (build-system python-build-system) (propagated-inputs - `(("python-notebook" ,python-notebook))) + (list python-notebook)) (home-page "https://ipython.org") (synopsis "IPython HTML widgets for Jupyter") (description "This package provides interactive HTML widgets for Jupyter @@ -12323,16 +12132,14 @@ notebooks.") "1w217j8i53x14l7b05fk300k222zs9vkcjaa1rbrw3sk43k466lz")))) (build-system python-build-system) (propagated-inputs - `(("python-ipykernel" ,python-ipykernel) - ("python-ipython" ,python-ipython) - ("python-jupyterlab-widgets" ,python-jupyterlab-widgets) - ("python-nbformat" ,python-nbformat) - ("python-traitlets" ,python-traitlets) - ("python-widgetsnbextension" ,python-widgetsnbextension))) + (list python-ipykernel + python-ipython + python-jupyterlab-widgets + python-nbformat + python-traitlets + python-widgetsnbextension)) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-mock python-pytest python-pytest-cov)) (home-page "https://ipython.org") (synopsis "IPython HTML widgets for Jupyter") (description "Ipywidgets are interactive HTML widgets for Jupyter @@ -12344,22 +12151,20 @@ in the data.") (define-public python-jupyter-console (package (name "python-jupyter-console") - (version "6.1.0") + (version "6.4.0") (source (origin (method url-fetch) (uri (pypi-uri "jupyter_console" version)) (sha256 (base32 - "06s3kr5vx0l1y1b7fxb04dmrppscl7q69sl9yyfr0d057d1ssvkg")))) + "1iqrxhd8hvlyf8cqbc731ssnwm61wrycnbiczy5wsfahd3hlh8i4")))) (build-system python-build-system) (propagated-inputs - `(("python-ipykernel" ,python-ipykernel) - ("python-jupyter-client" ,python-jupyter-client) - ("python-prompt-toolkit" ,python-prompt-toolkit-2) - ("python-pygments" ,python-pygments))) + (list python-ipykernel python-jupyter-client python-prompt-toolkit-2 + python-pygments)) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose python-pytest)) (home-page "https://jupyter.org") (synopsis "Jupyter terminal console") (description "This package provides a terminal-based console frontend for @@ -12418,10 +12223,9 @@ Jupyter kernels such as IJulia and IRKernel.") (setenv "QT_QPA_PLATFORM" "offscreen") #t))))) (propagated-inputs - `(("python-ipykernel" ,python-ipykernel) - ("python-ipython" ,python-ipython))) + (list python-ipykernel python-ipython python-pyqt)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://jupyter.org") (synopsis "Jupyter Qt console") (description "This package provides a Qt-based console for Jupyter with @@ -12458,10 +12262,9 @@ support for rich media output.") "six>=1.11.0")) #t))))) (propagated-inputs - `(("python-editorconfig" ,python-editorconfig) - ("python-six" ,python-six))) + (list python-editorconfig python-six)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (synopsis "JavaScript unobfuscator and beautifier") (description "Beautify, unpack or deobfuscate JavaScript, leveraging popular online obfuscators.") @@ -12481,12 +12284,12 @@ popular online obfuscators.") (build-system python-build-system) (arguments '(#:tests? #f)) ; there are none. (propagated-inputs - `(("python-ipykernel" ,python-ipykernel) - ("python-ipywidgets" ,python-ipywidgets) - ("python-jupyter-console" ,python-jupyter-console) - ("python-nbconvert" ,python-nbconvert) - ("python-notebook" ,python-notebook) - ("python-qtconsole" ,python-qtconsole))) + (list python-ipykernel + python-ipywidgets + python-jupyter-console + python-nbconvert + python-notebook + python-qtconsole)) (home-page "https://jupyter.org") (synopsis "Web application for interactive documents") (description @@ -12508,9 +12311,7 @@ simulation, statistical modeling, machine learning and much more.") (base32 "1bpalpia6r5x1kknbk11p1fzph56fmmnp405ds8icksd3knr5aw4")))) (native-inputs - `(("python-hypothesis" ,python-hypothesis) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-hypothesis python-pytest python-pytest-runner)) (build-system python-build-system) ;; XXX: Incompatible with Pytest 4: <https://github.com/chardet/chardet/issues/173>. (arguments `(#:tests? #f)) @@ -12536,7 +12337,7 @@ automatically detect a wide range of file encodings.") (base32 "0rr3iv2xw4rz5ijnfqk229fw85cq6p6rhqqsilm0ldzncblfg63h")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/ousret/charset_normalizer") (synopsis "Universal Charset Detector, alternative to Chardet") (description "This library helps you read text from an unknown charset @@ -12559,15 +12360,18 @@ library provides codecs are supported.") (file-name (git-file-name name version)) (sha256 (base32 - "0aad9gbswnnhssin2q0m5lmpm0ahyf80ahs2zjigbn5y7fvljnd0")))) + "0aad9gbswnnhssin2q0m5lmpm0ahyf80ahs2zjigbn5y7fvljnd0")) + (patches (search-patches "python-docopt-pytest6-compat.patch")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (arguments `(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ (invoke "py.test")))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "py.test"))))))) (home-page "http://docopt.org") (synopsis "Command-line interface description language for Python") (description "This library allows the user to define a command-line @@ -12605,7 +12409,7 @@ programmatically with command-line parsers like @code{getopt} and #t)))) #:tests? #f)) ; no test suite (propagated-inputs - `(("dialog" ,dialog))) + (list dialog)) (home-page "http://pythondialog.sourceforge.net/") (synopsis "Python interface to the UNIX dialog utility") (description "A Python wrapper for the dialog utility. Its purpose is to @@ -12641,7 +12445,7 @@ This allows one to make simple text-mode user interfaces on Unix-like systems") (patches (search-patches "python-configobj-setuptools.patch")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (synopsis "Config file reading, writing and validation") (description "ConfigObj is a simple but powerful config file reader and writer: an ini file round tripper. Its main feature is that it is very easy to @@ -12665,7 +12469,7 @@ config files.") "1p1pzpf5qpf80bfxsx1mbw9blyhhypjvhl3i60pbmhfmhvlpplgd")))) (build-system python-build-system) (native-inputs - `(("python-pyyaml" ,python-pyyaml))) + (list python-pyyaml)) (arguments `(#:phases (modify-phases %standard-phases @@ -12768,7 +12572,7 @@ the standard library.") (replace 'check (lambda _ (invoke "pytest" "tests.py")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/foutaise/texttable/") (synopsis "Python module for creating simple ASCII tables") (description "Texttable is a Python module for creating simple ASCII @@ -12781,14 +12585,15 @@ tables.") (define-public python-atomicwrites (package (name "python-atomicwrites") - (version "1.3.0") + (version "1.4.0") (source (origin (method url-fetch) (uri (pypi-uri "atomicwrites" version)) (sha256 (base32 - "19ngcscdf3jsqmpcxn6zl5b6anmsajb6izp1smcd1n02midl9abm")))) + "0yla2svfhfqrcj8qbyqzx7wi4jy0dwcxvlkg0k3zjd54s5m3jw5f")))) (build-system python-build-system) + (arguments `(#:tests? #f)) ;avoid circular dependency with pytest (synopsis "Atomic file writes in Python") (description "Library for atomic file writes using platform dependent tools for atomic file system operations.") @@ -12831,16 +12636,15 @@ for atomic file system operations.") (lambda _ (setenv "PBR_VERSION" "3.0.1")))))) (native-inputs - `(("python-pbr" ,python-pbr) - ("python-pytest" ,python-pytest) - ("python-pytest-catchlog" ,python-pytest-catchlog) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-mock" ,python-pytest-mock) - ("python-pytest-runner" ,python-pytest-runner) - ("python-pytest-xdist" ,python-pytest-xdist))) + (list python-pbr + python-pytest + python-pytest-catchlog + python-pytest-cov + python-pytest-mock + python-pytest-runner + python-pytest-xdist)) (propagated-inputs - `(("python-inflection" ,python-inflection) - ("python-tinycss" ,python-tinycss))) + (list python-inflection python-tinycss)) (home-page "https://github.com/blambright/qstylizer") (synopsis "Qt stylesheet generation utility for PyQt/PySide") (description "@code{qstylizer} is a Python package designed to help with @@ -12859,7 +12663,7 @@ the construction of PyQt/PySide stylesheets.") "0f9lmxwcq0y9lb8w0whbni7gwy12gbv74h1igh85qn9aq0iydkxd")))) (build-system python-build-system) (propagated-inputs - `(("python-click" ,python-click))) + (list python-click)) (synopsis "Utilities for multithreading in Click") (description "This package provides utilities for multithreading in Click applications.") @@ -12878,7 +12682,7 @@ applications.") "091i03bhxyzsdbc6kilxhivfda2f8ymz3b33xa6cj5kbzjiirz8n")))) (build-system python-build-system) (propagated-inputs - `(("python-click" ,python-click))) + (list python-click)) (synopsis "Logging for click applications") (description "This package provides a Python library for logging Click applications.") @@ -12899,7 +12703,7 @@ applications.") (arguments `(#:tests? #f)) ; no target (propagated-inputs - `(("python-click" ,python-click))) + (list python-click)) (synopsis "Extends click.Group") (description "This package extends click.Group to invoke a command without explicit subcommand name.") @@ -12928,13 +12732,13 @@ explicit subcommand name.") (invoke "pytest")) #t))))) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-freezegun" ,python-freezegun) - ("python-pretend" ,python-pretend) - ("python-pytest" ,python-pytest) - ("python-pytest-asyncio" ,python-pytest-asyncio) - ("python-simplejson" ,python-simplejson) - ("python-twisted" ,python-twisted))) + (list python-coverage + python-freezegun + python-pretend + python-pytest + python-pytest-asyncio + python-simplejson + python-twisted)) (home-page "https://www.structlog.org/") (synopsis "Structured Logging for Python") (description "@code{structlog} changes logging in Python by adding structure @@ -12953,8 +12757,7 @@ to your log entries.") "1xhak74yj3lqflvpijg15rnkklrigvsp5q7s4as4h6a157d8q8ip")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-pytest python-setuptools-scm)) (synopsis "Namespace control and lazy-import mechanism") (description "With apipkg you can control the exported namespace of a Python package and greatly reduce the number of imports for your users. It is a small @@ -12980,11 +12783,15 @@ pure Python module that works on virtually all Python versions.") (replace 'check (lambda* (#:key inputs outputs tests? #:allow-other-keys) (when tests? + ;; Unset PYTHONDONTWRITEBYTECODE to match the + ;; expectations of a test in + ;; 'testing/test_gateway.py'. + (unsetenv "PYTHONDONTWRITEBYTECODE") + (add-installed-pythonpath inputs outputs) (invoke "pytest" "-vv"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-pytest python-setuptools-scm)) (synopsis "Rapid multi-Python deployment") (description "Execnet provides a share-nothing model with channel-send/receive communication for distributing execution across many @@ -13013,8 +12820,7 @@ minimal and fast API targeting the following uses: "19574j3jwssm2dkqykih4568xqfgjsa3hcd79yl5s2vfys3qvh8g")))) (build-system python-build-system) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-pytz" ,python-pytz))) + (list python-dateutil python-pytz)) (synopsis "Python library for parsing iCalendar files") (description "The icalendar package is a parser/generator of iCalendar files for use with Python.") @@ -13058,9 +12864,9 @@ files for use with Python.") (replace 'check (lambda _ (invoke "py.test" "-v")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-args" ,python-args))) + (list python-args)) (home-page "https://github.com/kennethreitz/clint") (synopsis "Command-line interface tools") (description @@ -13084,7 +12890,7 @@ output, progress bar display, and pipes.") "1j81nddvnb145x4p81bnfpyai6g26i2dc1633ycsk025bb18m01a")))) (build-system python-build-system) (propagated-inputs - `(("python-appdirs" ,python-appdirs))) + (list python-appdirs)) (home-page "https://github.com/alex/rply") (synopsis "Parser generator for Python") (description @@ -13119,14 +12925,9 @@ with a new public API, and RPython support.") (setenv "HOME" "/tmp") (invoke "nosetests")))))) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-nose" ,python-nose))) + (list python-coverage python-nose)) (propagated-inputs - `(("python-astor" ,python-astor) - ("python-colorama" ,python-colorama) - ("python-rply" ,python-rply) - ("python-funcparserlib" - ,python-funcparserlib))) + (list python-astor python-colorama python-rply python-funcparserlib)) (home-page "http://hylang.org/") (synopsis "Lisp frontend to Python") (description @@ -13289,18 +13090,17 @@ concurrent.futures package from Python 3.2") "0b2v3mim90rmfvixkaniz2qrs650sk230rzgd5zhcjfldmlqgxpc")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six) - ("python-utils" ,python-utils))) + (list python-six python-utils)) (native-inputs - `(("python-flake8" ,python-flake8) - ("python-freezegun" ,python-freezegun) - ("python-pycodestyle" ,python-pycodestyle) - ("python-pytest" ,python-pytest) - ("python-pytest-cache" ,python-pytest-cache) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-flakes" ,python-pytest-flakes) - ("python-pytest-pep8" ,python-pytest-pep8) - ("python-sphinx" ,python-sphinx))) + (list python-flake8 + python-freezegun + python-pycodestyle + python-pytest + python-pytest-cache + python-pytest-cov + python-pytest-flakes + python-pytest-pep8 + python-sphinx)) (home-page "https://github.com/WoLpH/python-progressbar") (synopsis "Text progress bar library for Python") (description @@ -13350,6 +13150,18 @@ text.") (define-public python2-colorama (package-with-python2 python-colorama)) +;; awscli and botocore do not accept version 0.4.4 +(define-public python-colorama-for-awscli + (package + (inherit python-colorama) + (version "0.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "colorama" version)) + (sha256 + (base32 "189n8hpijy14jfan4ha9f5n06mnl33cxz7ay92wjqgkr639s0vg9")))))) + (define-public python-moto (package (name "python-moto") @@ -13366,9 +13178,7 @@ text.") (modify-phases %standard-phases (add-after 'unpack 'patch-hardcoded-executable-names (lambda* (#:key inputs #:allow-other-keys) - (let ((bash-exec (string-append - (assoc-ref inputs "bash") - "/bin/sh"))) + (let ((bash-exec (search-input-file inputs "/bin/sh"))) (substitute* "moto/batch/models.py" (("/bin/sh") bash-exec)) (substitute* (find-files "tests" "\\.py$") @@ -13390,36 +13200,36 @@ text.") " and not test_cancel_running_job" " and not test_container_overrides")))))))) (native-inputs - `(("python-flask" ,python-flask) - ("python-flask-cors" ,python-flask-cors) - ("python-freezegun" ,python-freezegun) - ("python-parameterized" ,python-parameterized) - ("python-pytest" ,python-pytest) - ("python-sure" ,python-sure))) + (list python-flask + python-flask-cors + python-freezegun + python-parameterized + python-pytest + python-sure)) (inputs `(("bash" ,bash-minimal))) (propagated-inputs - `(("python-aws-xray-sdk" ,python-aws-xray-sdk) - ("python-boto" ,python-boto) - ("python-boto3" ,python-boto3) - ("python-botocore" ,python-botocore) - ("python-cfn-lint" ,python-cfn-lint) - ("python-cryptography" ,python-cryptography) - ("python-dateutil" ,python-dateutil) - ("python-docker" ,python-docker) - ("python-idna" ,python-idna) - ("python-jinja2" ,python-jinja2) - ("python-jose" ,python-jose) - ("python-jsondiff" ,python-jsondiff) - ("python-mock" ,python-mock) - ("python-pytz" ,python-pytz) - ("python-pyyaml" ,python-pyyaml) - ("python-requests" ,python-requests) - ("python-responses" ,python-responses) - ("python-six" ,python-six) - ("python-sshpubkeys" ,python-sshpubkeys) - ("python-werkzeug" ,python-werkzeug) - ("python-xmltodict" ,python-xmltodict))) + (list python-aws-xray-sdk + python-boto + python-boto3 + python-botocore + python-cfn-lint + python-cryptography + python-dateutil + python-docker + python-idna + python-jinja2 + python-jose + python-jsondiff + python-mock + python-pytz + python-pyyaml + python-requests + python-responses + python-six + python-sshpubkeys + python-werkzeug + python-xmltodict)) (home-page "https://github.com/spulec/moto") (synopsis "Mock out the boto library") (description @@ -13440,7 +13250,7 @@ text.") "1dcxvszbikgzh99ybdc7jq0zb9wspy2ds8z9mjsqiyv3q884xpr5")))) (build-system python-build-system) (propagated-inputs - `(("python-pyasn1" ,python-pyasn1))) + (list python-pyasn1)) (synopsis "Pure-Python RSA implementation") (description "Python-RSA is a pure-Python RSA implementation. It supports encryption and decryption, signing and verifying signatures, and key @@ -13465,7 +13275,7 @@ library as well as on the command line.") "1c35qyhvy27q9ih9n899f3h4sdnpgq027dbiilly2qb5cvgarchm")))) (build-system python-build-system) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) (synopsis "Plugin and hook calling mechanism for Python") (description "Pluggy is an extraction of the plugin manager as used by Pytest but stripped of Pytest specific details.") @@ -13511,7 +13321,7 @@ Pytest but stripped of Pytest specific details.") (native-inputs ;; XXX: Not actually used since there are no tests but required for ;; build. - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://plumbum.readthedocs.io") (synopsis "Python shell combinators library") (description @@ -13532,9 +13342,9 @@ code.") "1zqqjlgmhgkpzg9ss5ki8wamxl83xn51fs6gn2a8cxsx9vkbvcvj")))) (build-system python-build-system) (propagated-inputs - `(("python-packaging" ,python-packaging))) + (list python-packaging)) (native-inputs - `(("python-unittest2" ,python-unittest2))) + (list python-unittest2)) (home-page "https://deprecation.readthedocs.io/") (synopsis "Python library to handle automated deprecations") (description @@ -13562,17 +13372,17 @@ that deprecated code is eventually removed.") ;; pytest>=2.8.0 for installation. '(#:tests? #f)) (propagated-inputs - `(("python-filelock" ,python-filelock) - ("python-packaging" ,python-packaging) - ("python-pluggy" ,python-pluggy) - ("python-py" ,python-py) - ("python-six" ,python-six) - ("python-toml" ,python-toml) - ("python-virtualenv" ,python-virtualenv))) - (native-inputs - `(; FIXME: Missing: ("python-pytest-timeout" ,python-pytest-timeout) - ("python-pytest" ,python-pytest) ; >= 2.3.5 - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-filelock + python-packaging + python-pluggy + python-py + python-six + python-toml + python-virtualenv)) + (native-inputs + (list ; FIXME: Missing: ("python-pytest-timeout" ,python-pytest-timeout) + python-pytest ; >= 2.3.5 + python-setuptools-scm)) (home-page "https://tox.readthedocs.io") (synopsis "Virtualenv-based automation of test activities") (description "Tox is a generic virtualenv management and test command line @@ -13595,7 +13405,7 @@ servers.") "0k0765x1mybcrzajh3hiqkl8sy9hs0bmn4900frxy0j3ykvaxqmx")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (synopsis "JSON Matching Expressions") (description "JMESPath (pronounced “james path”) is a Python library that allows one to declaratively specify how to extract elements from a JSON @@ -13618,10 +13428,9 @@ document.") (base32 "1kn1w4dp9mrsq6kzmhf4pjmx3wicxc3dw1mwa924q8g48g77lr4c")))) (build-system python-build-system) (native-inputs - `(("cmake" ,cmake) - ("python-cython" ,python-cython))) + (list cmake python-cython)) (inputs - `(("symengine" ,symengine))) + (list symengine)) (home-page "https://github.com/symengine/symengine.py") (synopsis "Python library providing wrappers to SymEngine") (description @@ -13645,10 +13454,9 @@ manipulation library.") ;; fail. (arguments '(#:tests? #false)) (propagated-inputs - `(("python-future" ,python-future))) + (list python-future)) (native-inputs - `(("python-nose" ,python-nose) - ("python-numpy" ,python-numpy))) + (list python-nose python-numpy)) (home-page "https://uncertainties-python-package.readthedocs.io/") (synopsis "Calculations with uncertainties") (description @@ -13670,7 +13478,7 @@ expression.") "0f54sd4w1a72ij1bcxs2x7dk9xf8bzclawijf1z18bqx9f96l2gm")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/newville/asteval") (synopsis "Minimalistic evaluator of Python expressions") (description @@ -13691,12 +13499,9 @@ using the @code{ast} module") "0iab33jjb60f8kn0k0cqb0vjp1mdskks2n3kpn97zkw5cvjhq2b7")))) (build-system python-build-system) (propagated-inputs - `(("python-asteval" ,python-asteval) - ("python-numpy" ,python-numpy) - ("python-scipy" ,python-scipy) - ("python-uncertainties" ,python-uncertainties))) + (list python-asteval python-numpy python-scipy python-uncertainties)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://lmfit.github.io/lmfit-py/") (synopsis "Least-Squares minimization with bounds and constraints") (description @@ -13725,8 +13530,7 @@ enhancements to optimization and data fitting problems.") ;; subset of this library, so keep it around for now, but disable tests. '(#:tests? #f)) (propagated-inputs - `(("python-paramiko" ,python-paramiko) - ("python-requests" ,python-requests))) + (list python-paramiko python-requests)) (home-page "https://github.com/boto/boto") (synopsis "Python interfaces for Amazon Web Services") (description @@ -13754,9 +13558,7 @@ This software is unmaintained, and new projects should use @code{boto3} instead. ;; FIXME: Many tests are failing. '(#:tests? #f)) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-jmespath" ,python-jmespath) - ("python-urllib3" ,python-urllib3))) + (list python-dateutil python-jmespath python-urllib3)) (home-page "https://github.com/boto/botocore") (synopsis "Low-level interface to AWS") (description "Botocore is a Python library that provides a low-level @@ -13787,13 +13589,9 @@ interface to the Amazon Web Services (AWS) API.") (delete-file-recursively "tests/integration")))))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose) - ("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-nose python-mock python-pytest)) (propagated-inputs - `(("python-botocore" ,python-botocore) - ("python-jmespath" ,python-jmespath) - ("python-s3transfer" ,python-s3transfer))) + (list python-botocore python-jmespath python-s3transfer)) (synopsis "AWS SDK for Python") (description "Boto3 is a Python library for writing programs that interact with @@ -13846,7 +13644,7 @@ in pure Python.") #t)))) #:tests? #f)) ; no tests provided (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (inputs `(("xdotool" ,xdotool) ("libX11" ,libx11))) @@ -13881,10 +13679,9 @@ python-xdo for newer bindings.)") (format #t "test suite not run~%")) #t))))) (propagated-inputs - `(("python-markupsafe" ,python-markupsafe))) + (list python-markupsafe)) (native-inputs - `(("python-mock" ,python-mock) - ("python-nose" ,python-nose))) + (list python-mock python-nose)) (home-page "https://www.makotemplates.org/") (synopsis "Templating language for Python") (description "Mako is a templating language for Python that compiles @@ -13929,7 +13726,7 @@ server with very acceptable performance.") "11yfkzyplizdgndy34vyd5qlmr1n5mxis3a3svxmx8fnccdvknxc")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/pydanny/whichcraft") (synopsis "Cross-platform cross-python shutil.which functionality") (description @@ -13949,22 +13746,19 @@ designed to work across multiple versions of Python.") (base32 "0mx49whhwcxmvcak27zr7p7ndzkn3w7psfd7fzh3n91fi1r4v6kb")))) (build-system python-build-system) (native-inputs - `(("python-freezegun" ,python-freezegun) - ("python-pytest" ,python-pytest) - ("python-pytest-catchlog" ,python-pytest-catchlog) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-mock" ,python-pytest-mock))) - (propagated-inputs - `(("python-binaryornot" ,python-binaryornot) - ("python-click" ,python-click) - ("python-future" ,python-future) - ("python-jinja2" ,python-jinja2) - ("python-jinja2-time" ,python-jinja2-time) - ("python-poyo" ,python-poyo) - ("python-requests" ,python-requests) - ("python-slugify" ,python-slugify) - ("python-text-unidecode" ,python-text-unidecode) - ("python-whichcraft" ,python-whichcraft))) + (list python-freezegun python-pytest python-pytest-catchlog + python-pytest-cov python-pytest-mock)) + (propagated-inputs + (list python-binaryornot + python-click + python-future + python-jinja2 + python-jinja2-time + python-poyo + python-requests + python-slugify + python-text-unidecode + python-whichcraft)) (home-page "https://github.com/cookiecutter/cookiecutter") (synopsis "Command-line utility that creates projects from project templates") @@ -13987,11 +13781,9 @@ project template.") "1xia20wm0vx5dk85kcwgh13bylz8qh47ffjxssd2586r60xi783a")))) (build-system python-build-system) (native-inputs - `(("python-webob" ,python-webob) - ("python-webtest" ,python-webtest))) + (list python-webob python-webtest)) (propagated-inputs - `(("python-lxml" ,python-lxml) - ("python-cssselect" ,python-cssselect))) + (list python-lxml python-cssselect)) (home-page "https://github.com/gawel/pyquery") (synopsis "Make jQuery-like queries on xml documents") (description "pyquery allows you to make jQuery queries on xml documents. @@ -14050,11 +13842,9 @@ and provides a uniform API regardless of which JSON implementation is used.") "1sv600dgqwpimr6i1g59y9hpn50mc236gdqkr7zin13kvlpx0g87")))) (build-system python-build-system) (native-inputs - `(("python-case" ,python-case) - ("python-pytest-sugar" ,python-pytest-sugar) - ("python-mock" ,python-mock))) + (list python-case python-pytest-sugar python-mock)) (propagated-inputs - `(("python-vine" ,python-vine))) + (list python-vine)) (home-page "https://github.com/celery/py-amqp") (synopsis "Low-level AMQP client for Python (fork of amqplib)") @@ -14088,8 +13878,7 @@ alternative when librabbitmq is not available.") "0jd9864k3csc06kipiwzjlk9mq4054s8kzk5q1cfnxj8572s4iv4")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six) - ("python-twisted" ,python-twisted))) + (list python-six python-twisted)) (home-page "https://github.com/txamqp/txamqp") (synopsis "Communicate with AMQP peers and brokers using Twisted") (description @@ -14114,15 +13903,10 @@ applications.") "15k8f7mzqr049sg9vi48m19vjykviafk3f0p5xzgw9by0x0kyxjj")))) (build-system python-build-system) (native-inputs - `(("python-mock" ,python-mock) - ("python-case" ,python-case) - ("python-pyro4" ,python-pyro4) - ("python-pytest-sugar" ,python-pytest-sugar) - ("python-pytz" ,python-pytz))) + (list python-mock python-case python-pyro4 python-pytest-sugar + python-pytz)) (propagated-inputs - `(("python-anyjson" ,python-anyjson) - ("python-amqp" ,python-amqp) - ("python-redis" ,python-redis))) + (list python-anyjson python-amqp python-redis)) (home-page "https://kombu.readthedocs.io") (synopsis "Message passing library for Python") (description "The aim of Kombu is to make messaging in Python as easy as @@ -14158,8 +13942,7 @@ RabbitMQ messaging server is the most popular implementation.") "03msmapj3s5zgqk87d646mafz7a01h5bm2wijalgpi0s80ks5na2")))) (build-system python-build-system) (native-inputs - `(("python-case" ,python-case) - ("python-pytest" ,python-pytest))) + (list python-case python-pytest)) (home-page "https://github.com/celery/billiard") (synopsis "Python multiprocessing fork with improvements and bugfixes") @@ -14204,12 +13987,9 @@ Python 2.4 and 2.5, and will draw its fixes/improvements from python-trunk.") "pytest>=3.0")) #t))))) (native-inputs - `(("python-case" ,python-case) - ("python-pytest" ,python-pytest))) + (list python-case python-pytest)) (propagated-inputs - `(("python-pytz" ,python-pytz) - ("python-billiard" ,python-billiard) - ("python-kombu" ,python-kombu))) + (list python-pytz python-billiard python-kombu)) (home-page "https://celeryproject.org") (synopsis "Distributed Task Queue") (description "Celery is an asynchronous task queue/job queue based on @@ -14305,27 +14085,27 @@ ISO 8859, etc.).") (lambda* (#:key inputs outputs #:allow-other-keys) (add-installed-pythonpath inputs outputs) (invoke "pytest" "-vv" "-k" - ;; These tests try to download online data. - (string-append "not test_PolyLineROI" - " and not test_getArrayRegion_axisorder" - " and not test_getArrayRegion" - " and not test_PlotCurveItem" - " and not test_NonUniformImage_colormap" - " and not test_NonUniformImage_lut" - " and not test_ImageItem_axisorder" - " and not test_ImageItem"))))))) - (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-xdist" ,python-pytest-xdist))) + (string-append + ;; These tests try to download online data. + "not test_PolyLineROI" + " and not test_getArrayRegion_axisorder" + " and not test_getArrayRegion" + " and not test_PlotCurveItem" + " and not test_NonUniformImage_colormap" + " and not test_NonUniformImage_lut" + " and not test_ImageItem_axisorder" + " and not test_ImageItem" + ;; The test_reload test fails and suggests adding + ;; "--assert=plain" to the pytest command, but it + ;; doesn't solve the failure. + " and not test_reload"))))))) + (native-inputs + (list python-pytest python-pytest-cov python-pytest-xdist)) (inputs - `(("qtbase" ,qtbase-5))) + (list qtbase-5)) (propagated-inputs - `(("python-h5py" ,python-h5py) - ("python-numpy" ,python-numpy) - ("python-pyopengl" ,python-pyopengl) - ("python-scipy" ,python-scipy) - ("python-pyqt" ,python-pyqt))) + (list python-h5py python-numpy python-pyopengl python-scipy + python-pyqt)) (home-page "http://www.pyqtgraph.org") (synopsis "Scientific graphics and GUI library for Python") (description @@ -14358,10 +14138,9 @@ applications.") (setenv "QT_QPA_PLATFORM" "offscreen") #t))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-pytest python-pytest-runner)) (propagated-inputs - `(("python-pyqt" ,python-pyqt))) + (list python-pyqt)) (home-page "https://github.com/CabbageDevelopment/qasync") (synopsis "Implementation of the PEP 3156 Event-Loop with Qt") (description @@ -14430,8 +14209,7 @@ main process so that they are handled correctly.") '(;; The test suite relies on some non-portable Windows interfaces. #:tests? #f)) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-pyicu" ,python-pyicu))) + (list python-dateutil python-pyicu)) (synopsis "Parse and generate vCard and vCalendar files") (description "Vobject is intended to be a full featured Python package for parsing and generating vCard and vCalendar files. Currently, iCalendar files @@ -14455,7 +14233,7 @@ way.") (base32 "00yvj8bxmhhhhd74v7j0x673is7vizmxwgb3dd5xmnkr74ybyi7w")))) (build-system python-build-system) - (native-inputs `(("python-pytest" ,python-pytest-6))) + (native-inputs (list python-pytest-6)) (home-page "https://software.clapper.org/munkres/") (synopsis "Implementation of the Munkres algorithm") (description "The Munkres module provides an implementation of the Munkres @@ -14463,9 +14241,6 @@ algorithm (also called the Hungarian algorithm or the Kuhn-Munkres algorithm), useful for solving the Assignment Problem.") (license license:bsd-3))) -(define-public python2-munkres - (package-with-python2 python-munkres)) - (define-public python-whoosh (package (name "python-whoosh") @@ -14480,7 +14255,7 @@ useful for solving the Assignment Problem.") (build-system python-build-system) (arguments '(#:tests? #f)) ; Test invocation is no longer supported by Python. (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://bitbucket.org/mchaput/whoosh") (synopsis "Full text indexing, search, and spell checking library") (description @@ -14508,13 +14283,10 @@ checking library.") (base32 "1r9y714cz8m894rxp7pyvicr1lw2iid24vz6fxbl5wzy8ibgxlqr")))) (build-system python-build-system) (inputs - `(("python-chardet" ,python-chardet))) + (list python-chardet)) (native-inputs - `(("python-check-manifest" ,python-check-manifest) - ("python-flake8" ,python-flake8) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-dependency" ,python-pytest-dependency))) + (list python-check-manifest python-flake8 python-pytest + python-pytest-cov python-pytest-dependency)) (arguments `(#:phases (modify-phases %standard-phases @@ -14597,8 +14369,7 @@ anymore.") (arguments `(#:python ,python-2)) (propagated-inputs - `(("python2-scandir" ,python2-scandir) - ("python2-six" ,python2-six))) + (list python2-scandir python2-six)) (home-page "https://pypi.org/project/pathlib2/") (synopsis "Object-oriented file system paths - backport of standard pathlib module") @@ -14649,7 +14420,7 @@ ambiguities (forward vs. backward slashes, etc.). (add-installed-pythonpath inputs outputs) (invoke "pytest" "-vv" "jellyfish/test.py"))))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/jamesturk/jellyfish") (synopsis "Approximate and phonetic matching of strings") (description "Jellyfish uses a variety of string comparison and phonetic @@ -14676,7 +14447,7 @@ encoding algorithms to do fuzzy string matching.") `(;; It supports Python 3, but Python 3 can already do Unicode CSV. #:python ,python-2)) (native-inputs - `(("python2-unittest2" ,python2-unittest2))) + (list python2-unittest2)) (home-page "https://github.com/jdunck/python-unicodecsv") (synopsis "Unicode CSV module for Python 2") (description "Unicodecsv is a drop-in replacement for Python 2.7's CSV @@ -14716,12 +14487,9 @@ module, adding support for Unicode strings.") (find-files out "\\.gz$")) #t)))))) (propagated-inputs - `(("python-chardet" ,python-chardet) - ("python-cryptography" ,python-cryptography) - ("python-sortedcontainers" ,python-sortedcontainers))) + (list python-chardet python-cryptography python-sortedcontainers)) (native-inputs - `(("python-nose" ,python-nose) - ("python-tox" ,python-tox))) + (list python-nose python-tox)) (home-page "https://github.com/pdfminer/pdfminer.six") (synopsis "PDF parser and analyzer") (description "@code{pdfminer.six} is a community maintained fork of @@ -14759,8 +14527,8 @@ can also be used to get the exact location, font or color of the text.") (lambda* (#:key inputs tests? #:allow-other-keys) (when tests? (invoke "pytest" "-vv"))))))) - (native-inputs `(("python-pytest" ,python-pytest))) - (inputs `(("libarchive" ,libarchive))) + (native-inputs (list python-pytest)) + (inputs (list libarchive)) (home-page "https://github.com/markokr/rarfile") (synopsis "RAR archive reader for Python") (description "This is Python module for RAR archive reading. The interface @@ -14789,11 +14557,8 @@ is made as zipfile like as possible.") "tests") (invoke "python" "-m" "pytest" "-vv"))))))) (propagated-inputs - `(("python-attrs" ,python-attrs) - ("python-colorama" ,python-colorama) - ("python-commonmark" ,python-commonmark) - ("python-pygments" ,python-pygments) - ("python-typing-extensions" ,python-typing-extensions))) + (list python-attrs python-colorama python-commonmark python-pygments + python-typing-extensions)) (native-inputs `(("python-pytest" ,python-pytest) ("tests" @@ -14819,31 +14584,19 @@ syntax highlighting, markdown and more to the terminal.") (define-public python-magic (package (name "python-magic") - (version "0.4.15") + (version "0.4.24") + (home-page "https://github.com/ahupp/python-magic") (source (origin - (method url-fetch) - (uri (pypi-uri "python-magic" version)) + (method git-fetch) + (uri (git-reference (url home-page) (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "1mgwig9pnzgkf86q9ji9pnc99bngms15lfszq5rgqb9db07mqxpk")) - (file-name (string-append name "-" version "-checkout")))) + "17jalhjbfd600lzfz296m0nvgp6c7vx1mgz82jbzn8hgdzknf4w0")))) (build-system python-build-system) (arguments - ;; The tests are unreliable, so don't run them. The tests fail - ;; under Python3 because they were written for Python2 and - ;; contain import statements that do not work in Python3. One of - ;; the tests fails under Python2 because its assertions are - ;; overly stringent; it relies on comparing output strings which - ;; are brittle and can change depending on the version of - ;; libmagic being used and the system on which the test is - ;; running. In my case, under GuixSD 0.10.0, only one test - ;; failed, and it seems to have failed only because the version - ;; of libmagic that is packaged in Guix outputs a slightly - ;; different (but not wrong) string than the one that the test - ;; expected. - '(#:tests? #f - #:phases (modify-phases %standard-phases + '(#:phases (modify-phases %standard-phases ;; Replace a specific method call with a hard-coded ;; path to the necessary libmagic.so file in the ;; store. If we don't do this, then the method call @@ -14853,24 +14606,22 @@ syntax highlighting, markdown and more to the terminal.") (add-before 'build 'hard-code-path-to-libmagic (lambda* (#:key inputs #:allow-other-keys) (let ((file (assoc-ref inputs "file"))) - (substitute* "magic.py" - (("ctypes.util.find_library\\('magic'\\)") - (string-append "'" file "/lib/libmagic.so'"))) - #t))) - (add-before 'install 'disable-egg-compression - (lambda _ - (let ((port (open-file "setup.cfg" "a"))) - (display "\n[easy_install]\nzip_ok = 0\n" - port) - (close-port port) - #t)))))) + (substitute* "magic/loader.py" + (("find_library\\('magic'\\)") + (string-append "'" file "/lib/libmagic.so'")))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + ;; The test suite mandates this variable. + (setenv "LC_ALL" "en_US.UTF-8") + (if tests? + (invoke "python" "./test/test.py") + (format #t "test suite not run~%"))))))) + (native-inputs + (list which)) (inputs ;; python-magic needs to be able to find libmagic.so. - `(("file" ,file))) - (home-page - "https://github.com/ahupp/python-magic") - (synopsis - "File type identification using libmagic") + (list file)) + (synopsis "File type identification using libmagic") (description "This module uses ctypes to access the libmagic file type identification library. It makes use of the local magic database and @@ -14901,15 +14652,15 @@ the same purpose: to provide Python bindings for libmagic.") `(#:python ,python-2 #:tests? #f)) (propagated-inputs - `(("python2-dateutil" ,python2-dateutil) - ;; The python-file package also provides a magic.py module. - ;; This is an unfortunate state of affairs; however, s3cmd - ;; fails to install if it cannot find specifically the - ;; python-magic package. Thus we include it, instead of using - ;; python-file. Ironically, s3cmd sometimes works better - ;; without libmagic bindings at all: - ;; https://github.com/s3tools/s3cmd/issues/198 - ("python2-magic" ,python2-magic))) + (list python2-dateutil + ;; The python-file package also provides a magic.py module. + ;; This is an unfortunate state of affairs; however, s3cmd + ;; fails to install if it cannot find specifically the + ;; python-magic package. Thus we include it, instead of using + ;; python-file. Ironically, s3cmd sometimes works better + ;; without libmagic bindings at all: + ;; https://github.com/s3tools/s3cmd/issues/198 + python2-magic)) (home-page "https://s3tools.org/s3cmd") (synopsis "Command line tool for S3-compatible storage services") (description @@ -14933,9 +14684,9 @@ CloudFront content delivery network.") "107x2wmchlch8saixb488cgjz9n6inl38wi7nxkb942rbaapxiqb")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (inputs - `(("pkg-config" ,pkg-config))) + (list pkg-config)) (arguments `(#:phases (modify-phases %standard-phases @@ -15026,10 +14777,9 @@ to support both Python 2 and Python 3 with minimal overhead.") "15ix8crpad26cfl1skyg7qajqqfdrm8q5ahhmlfmqi1aw0jqj2g2")))) (build-system python-build-system) (native-inputs - `(("python-cython" ,python-cython) - ("python-sphinx" ,python-sphinx))) + (list python-cython python-sphinx)) (inputs - `(("pari-gp" ,pari-gp))) + (list pari-gp)) (arguments `(#:modules ((guix build python-build-system) ((guix build gnu-build-system) #:prefix gnu:) @@ -15088,8 +14838,7 @@ respectively.") " line += ' -L" pcre "/lib" " -L " libgc "/lib'"))) #t)))))) - (inputs `(("pcre" ,pcre) - ("libgc" ,libgc))) + (inputs (list pcre libgc)) (home-page "https://shedskin.github.io/") (synopsis "Experimental Python-2 to C++ Compiler") (description (string-append "This is an experimental compiler for a subset of @@ -15128,7 +14877,7 @@ to occurrences in strings and comments.") (base32 "16z8zq83hxy48g6hh4xczbdz50qvxv9k1aahr4fqq7jis60cc262")))) (build-system python-build-system) (inputs - `(("file" ,file))) + (list file)) (arguments '(#:phases (modify-phases %standard-phases @@ -15165,16 +14914,9 @@ own code, responding to click events and updating clock every second.") (modify-phases %standard-phases (replace 'check (lambda _ - ;; Upstream runs tests after installation and the package itself - ;; resides in a subdirectory. Extend PYTHONPATH so it will be - ;; found. - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) (invoke "py.test" "-vv" "tests" "README.rst")))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-six" ,python-six))) + (list python-pytest python-six)) (home-page "https://github.com/ionelmc/python-tblib") (synopsis "Traceback serialization library") (description @@ -15256,10 +14998,9 @@ are synchronized with data exchanges on \"channels\".") "19qmqsh984zq1rzzjy4vqnmviaqnymcyl8h7z99pnicbgwnm2adz")))) (build-system python-build-system) (propagated-inputs - `(("python-graphviz" ,python-graphviz))) + (list python-graphviz)) (native-inputs - `(("python-mock" ,python-mock) - ("graphviz" ,graphviz))) + (list python-mock graphviz)) (home-page "https://mg.pov.lt/objgraph/") (synopsis "Draw Python object reference graphs with graphviz") (description @@ -15364,13 +15105,6 @@ graphviz.") (string-join disabled-tests "\n"))))))) (replace 'check (lambda _ - ;; Make sure the build directory is on PYTHONPATH. - (setenv "PYTHONPATH" - (string-append - (getenv "PYTHONPATH") ":" - (getcwd) "/build/" - (car (scandir "build" (cut string-prefix? "lib." <>))))) - ;; Use the build daemons configured number of workers. (setenv "NWORKERS" (number->string (parallel-job-count))) @@ -15382,14 +15116,11 @@ graphviz.") ("python-zope.event" ,python-zope-event) ("python-zope.interface" ,python-zope-interface))) (native-inputs - `(("python-six" ,python-six) - - ;; For tests. - ("python-dnspython" ,python-dnspython) - ("python-psutil" ,python-psutil))) + (list python-six + ;; For tests. + python-dnspython python-psutil)) (inputs - `(("c-ares" ,c-ares) - ("libev" ,libev))) + (list c-ares libev)) (home-page "https://www.gevent.org/") (synopsis "Coroutine-based network library") (description @@ -15428,14 +15159,21 @@ format.") "17d3hnxv9qndagzz63mdpyk99xj63p9gq586vjn0rxk8cl197nym")))) (build-system python-build-system) (arguments - '(#:tests? #f)) ; FIXME: some tests fail - (propagated-inputs - `(("python-zope-interface" ,python-zope-interface) - ("python-pyhamcrest" ,python-pyhamcrest) - ("python-incremental" ,python-incremental) - ("python-hyperlink" ,python-hyperlink) - ("python-constantly" ,python-constantly) - ("python-automat" ,python-automat))) + '(#:tests? #f ; FIXME: some tests fail + #:phases + (modify-phases %standard-phases + ;; Remove scripts, because they depend on [conch] + (add-after 'unpack 'remove-entrypoint + (lambda _ + (substitute* "src/twisted/python/_setup.py" + (("\".+ = twisted\\.conch\\.scripts\\..+\",") ""))))))) + (propagated-inputs + (list python-zope-interface + python-pyhamcrest + python-incremental + python-hyperlink + python-constantly + python-automat)) (home-page "https://twistedmatrix.com/") (synopsis "Asynchronous networking framework written in Python") (description @@ -15475,13 +15213,12 @@ focus on event-based network programming and multiprotocol integration.") (lambda _ (invoke "nosetests")))))) (native-inputs - `(("python-mock" ,python-mock) - ("python-nose" ,python-nose) - - ;; These are optional at runtime, and provided here for tests. - ("python-gevent" ,python-gevent) - ("python-tornado" ,python-tornado) - ("python-twisted" ,python-twisted))) + (list python-mock + python-nose + ;; These are optional at runtime, and provided here for tests. + python-gevent + python-tornado + python-twisted)) (home-page "https://pika.readthedocs.org") (synopsis "Pure Python AMQP Client Library") (description @@ -15547,7 +15284,7 @@ data in Python.") (build-system python-build-system) (arguments '(#:tests? #f)) ; XXX: needs zookeeper (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://kazoo.readthedocs.org") (synopsis "High-level Zookeeper client library") (description @@ -15572,11 +15309,9 @@ programming errors.") (build-system python-build-system) (arguments '(#:tests? #f)) ; XXX: needs zookeeper, kafka, etc. (propagated-inputs - `(("python-gevent" ,python-gevent) - ("python-kazoo" ,python-kazoo) - ("python-tabulate" ,python-tabulate))) + (list python-gevent python-kazoo python-tabulate)) (inputs - `(("librdkafka" ,librdkafka))) + (list librdkafka)) (home-page "https://pykafka.readthedocs.io/") (synopsis "Apache Kafka client for Python") (description @@ -15640,7 +15375,8 @@ etc.") (uri (pypi-uri "chai" version)) (sha256 (base32 - "1k6n6zbgrrs83crp6mr3yqj9zlv40b8rpisyrliwsq7naml2p3gz")))) + "1k6n6zbgrrs83crp6mr3yqj9zlv40b8rpisyrliwsq7naml2p3gz")) + (patches (search-patches "python-chai-drop-python2.patch")))) (build-system python-build-system) (home-page "https://github.com/agoragames/chai") (synopsis "Mocking framework for Python") @@ -15649,9 +15385,6 @@ etc.") objects, patterned after the Mocha library for Ruby.") (license license:bsd-3))) -(define-public python2-chai - (package-with-python2 python-chai)) - (define-public python-inflection (package (name "python-inflection") @@ -15664,7 +15397,7 @@ objects, patterned after the Mocha library for Ruby.") "1jhnxgnw8y3mbzjssixh6qkc7a3afc4fygajhqrqalnilyvpzshq")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/jpvanhal/inflection") (synopsis "Python string transformation library") (description @@ -15709,15 +15442,10 @@ Wikipedia code samples at "17q6wi3q280kxmxzb2iwnnqih2xbljn18v0bjx2ip18p079j43ix")))) (build-system python-build-system) (native-inputs - `( ;; For testing - ("python-mock" ,python-mock) - ("python-pytest-mock" ,python-pytest-mock) - ("python-pytest" ,python-pytest))) + (list ;; For testing + python-mock python-pytest-mock python-pytest)) (propagated-inputs - `(("python-backpack" ,python-backpack) - ("python-clikit" ,python-clikit) - ("python-pastel" ,python-pastel) - ("python-pylev" ,python-pylev))) + (list python-backpack python-clikit python-pastel python-pylev)) (home-page "https://github.com/sdispater/cleo") (synopsis "Command-line arguments library for Python") (description @@ -15740,8 +15468,7 @@ docstring and colored output.") (base32 "062n694sfv24ylda6nh8228y2q9hrvy554kqx84y7czsjfbg4mxc")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pyyaml" ,python-pyyaml))) + (list python-pytest python-pyyaml)) (home-page "https://github.com/sdispater/tomlkit") (synopsis "Style-preserving TOML library") (description @@ -15794,7 +15521,7 @@ running in.") "0kvyapavbirk2x3n1jx4yb9nyigrj1s3x15nm3qhpvhkpqvqdqm2")) (patches (search-patches "python-memcached-syntax-warnings.patch")))) (build-system python-build-system) - (propagated-inputs `(("python-six" ,python-six))) + (propagated-inputs (list python-six)) (home-page "https://github.com/linsomniac/python-memcached") (synopsis "Pure python memcached client") @@ -15818,9 +15545,7 @@ more, possibly remote, memcached servers.") (build-system python-build-system) (arguments '(#:tests? #f)) ; no test in the PyPI tarball (propagated-inputs - `(("python-crashtest" ,python-crashtest) - ("python-pastel" ,python-pastel) - ("python-pylev" ,python-pylev))) + (list python-crashtest python-pastel python-pylev)) (home-page "https://github.com/sdispater/clikit") (synopsis "Group of utilities to build command line interfaces") (description @@ -15878,15 +15603,10 @@ strings require only one extra byte in addition to the strings themselves.") (lambda _ (invoke "pifpaf" "run" "memcached" "--port" "11211" "--" "pytest")))))) (native-inputs - `(("memcached" ,memcached) - ("python-fakeredis" ,python-fakeredis) - ("python-flexmock" ,python-flexmock) - ("python-pifpaf" ,python-pifpaf) - ("python-pytest" ,python-pytest))) + (list memcached python-fakeredis python-flexmock python-pifpaf + python-pytest)) (propagated-inputs - `(("python-memcached" ,python-memcached) - ("python-msgpack-python" ,python-msgpack-python) - ("python-redis" ,python-redis))) + (list python-memcached python-msgpack-python python-redis)) (home-page "https://github.com/sdispater/cachy") (synopsis "Simple yet effective caching library") (description @@ -15922,23 +15642,23 @@ database, file, dict stores. Cachy supports python versions 2.7+ and 3.2+.") (("packaging>=20.4,<21.0") "packaging>=20.0,<21.0")) #t))))) (propagated-inputs - `(("python-cachecontrol" ,python-cachecontrol) - ("python-cachy" ,python-cachy) - ("python-cleo" ,python-cleo) - ("python-clikit" ,python-clikit) - ("python-html5lib" ,python-html5lib) - ("python-keyring" ,python-keyring) - ("python-msgpack-transitional" ,python-msgpack-transitional) - ("python-packaging" ,python-packaging) - ("python-pexpect" ,python-pexpect) - ("python-pip" ,python-pip) - ("python-pkginfo" ,python-pkginfo) - ("python-poetry-core" ,python-poetry-core) - ("python-requests" ,python-requests) - ("python-requests-toolbelt" ,python-requests-toolbelt-0.9.1) - ("python-shellingham" ,python-shellingham) - ("python-tomlkit" ,python-tomlkit) - ("python-virtualenv" ,python-virtualenv))) + (list python-cachecontrol + python-cachy + python-cleo + python-clikit + python-html5lib + python-keyring + python-msgpack-transitional + python-packaging + python-pexpect + python-pip + python-pkginfo + python-poetry-core + python-requests + python-requests-toolbelt-0.9.1 + python-shellingham + python-tomlkit + python-virtualenv)) (home-page "https://python-poetry.org") (synopsis "Python dependency management and packaging made easy") (description "Poetry is a tool for dependency management and packaging @@ -15988,24 +15708,19 @@ some degree most natural languages too.") (delete-file "libcst/tests/test_pyre_integration.py") (delete-file "libcst/codemod/tests/test_codemod_cli.py") (delete-file "libcst/metadata/tests/test_full_repo_manager.py") - (delete-file "libcst/metadata/tests/test_type_inference_provider.py") - #t)) + (delete-file "libcst/metadata/tests/test_type_inference_provider.py"))) (add-before 'check 'generate-test-data (lambda _ - (setenv "PYTHONPATH" (string-append (getcwd) ":" (getenv "PYTHONPATH"))) (invoke "python" "-m" "libcst.codegen.generate" "visitors") (invoke "python" "-m" "libcst.codegen.generate" "return_types"))) (replace 'check - (lambda _ - (invoke "python" "-m" "unittest") - #t))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "unittest"))))))) (native-inputs - `(("python-black" ,python-black) - ("python-isort" ,python-isort))) + (list python-black python-isort)) (propagated-inputs - `(("python-typing-extensions" ,python-typing-extensions) - ("python-typing-inspect" ,python-typing-inspect) - ("python-pyyaml" ,python-pyyaml))) + (list python-typing-extensions python-typing-inspect python-pyyaml)) (home-page "https://github.com/Instagram/LibCST") (synopsis "Concrete Syntax Tree (CST) parser and serializer library for Python") (description @@ -16023,6 +15738,14 @@ feels like an AST.") ;; libcst/_add_slots.py license:asl2.0)))) +(define-public python-libcst-minimal + (hidden-package + (package + (inherit python-libcst) + (name "python-libcst-minimal") + (arguments '(#:tests? #f)) + (native-inputs '())))) + (define-public python-typing-inspect (package (name "python-typing-inspect") @@ -16032,11 +15755,11 @@ feels like an AST.") (uri (pypi-uri "typing_inspect" version)) (sha256 (base32 - "1dzs9a1pr23dhbvmnvms2jv7l7jk26023g5ysf0zvnq8b791s6wg")))) + "1dzs9a1pr23dhbvmnvms2jv7l7jk26023g5ysf0zvnq8b791s6wg")) + (patches (search-patches "python-typing-inspect-fix.patch")))) (build-system python-build-system) (propagated-inputs - `(("python-mypy-extensions" ,python-mypy-extensions) - ("python-typing-extensions" ,python-typing-extensions))) + (list python-mypy-extensions python-typing-extensions)) (home-page "https://github.com/ilevkivskyi/typing_inspect") (synopsis "API for inspection of types in the Python @code{typing} module") (description @@ -16055,7 +15778,7 @@ inspection of types defined in the Python standard typing module.") (base32 "0hwh29m9wa582ramj30p4pysckdrmki1z1b8iaaxk6mpfx2kc8wp")))) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) (build-system python-build-system) (home-page "https://github.com/ionelmc/python-lazy-object-proxy") (synopsis "Lazy object proxy for python") @@ -16078,8 +15801,21 @@ until the object is actually required, and caches the result of said call.") (base32 "1m0xvyby8baaxp6pfm0fgq8d2pq5dd8qm8bzfbrs009jaw5pza74")))) (build-system python-build-system) - (native-inputs `(("unzip" ,unzip))) - (arguments '(#:tests? #f)) ; XXX: requires internet access + (arguments + `(#:tests? #f ; XXX: requires internet access + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-getprotobyname-calls + ;; These calls are problematic in the build environment as there is + ;; no /etc/protocols. This breaks the sanity-check phase of any + ;; package depnding on this one. + (lambda _ + (substitute* "dns/rdtypes/IN/WKS.py" + (("socket.getprotobyname\\('tcp'\\)") + "6") + (("socket.getprotobyname\\('udp'\\)") + "17"))))))) + (native-inputs (list unzip)) (home-page "https://www.dnspython.org") (synopsis "DNS toolkit for Python") (description @@ -16155,8 +15891,7 @@ simple, lightweight implementation.") (("dnspython3") "dnspython")) #t))))) (propagated-inputs - `(("python-dnspython" ,python-dnspython) - ("python-idna" ,python-idna))) + (list python-dnspython python-idna)) (home-page "https://github.com/JoshData/python-email-validator") (synopsis "Email address validation library for Python") (description @@ -16191,7 +15926,7 @@ simple, lightweight implementation.") "and not test_125 " "and not test_131")))))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/hamstah/ukpostcodeparser") (synopsis "UK Postcode parser for Python") (description @@ -16219,43 +15954,20 @@ parsing UK postcodes.") (replace 'check (lambda _ (invoke "python" "-m" "pytest" "-v")))))) (native-inputs - `( ;; For testing - ("python-freezegun" ,python-freezegun) - ("python-pytest" ,python-pytest-6) - ("python-random2" ,python-random2) - ("python-ukpostcodeparser" ,python-ukpostcodeparser) - ("python-validators" ,python-validators))) + (list ;; For testing + python-freezegun + python-pytest-6 + python-random2 + python-ukpostcodeparser + python-validators)) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-text-unidecode" ,python-text-unidecode))) + (list python-dateutil python-text-unidecode)) (home-page "https://github.com/joke2k/faker") (synopsis "Python package that generates fake data") (description "Faker is a Python package that generates fake data such as names, addresses, and phone numbers.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-faker)))))) - -;; Faker 4.0 dropped Python 2 support, so we stick with this older version here. -(define-public python2-faker - (let ((base (package-with-python2 (strip-python2-variant - python-faker)))) - (package - (inherit base) - (version "3.0.1") - (source (origin - (method url-fetch) - (uri (pypi-uri "Faker" version)) - (sha256 - (base32 - "11cr0qvspkdh6198rqy56qildk7bnp6llj8kyy1dan5sp5n4dxy7")))) - (native-inputs - `(("python-mock" ,python2-mock) - ,@(package-native-inputs base))) - (propagated-inputs - `(("python2-ipaddress" ,python2-ipaddress) - ("python2-six" ,python2-six) - ,@(package-propagated-inputs base)))))) + (license license:expat))) (define-public python-pyaml (package @@ -16269,9 +15981,9 @@ addresses, and phone numbers.") "0fi604ix8lbpj1266q7js6szm771saprdzzcdwmj43wy83694qmr")))) (build-system python-build-system) (native-inputs - `(("python-unidecode" ,python-unidecode))) + (list python-unidecode)) (propagated-inputs - `(("python-pyyaml" ,python-pyyaml))) + (list python-pyyaml)) (home-page "https://github.com/mk-fg/pretty-yaml") (synopsis "YAML pretty-print library for Python") (description @@ -16295,10 +16007,9 @@ YAML-serialized data.") "14rq1mvm0jda90lcx9gyyby9dvq4x3js2cmxvd6vl4686ixwyqh1")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-nose" ,python-nose))) + (list python-pytest python-nose python-toml)) (propagated-inputs - `(("python-simplejson" ,python-simplejson))) + (list python-simplejson)) (home-page "https://github.com/sdispater/backpack") (synopsis "Utilities for working with Python collections") (description "Backpack provides some useful utilities for working with @@ -16331,9 +16042,9 @@ collections of data.") (add-installed-pythonpath inputs outputs) (invoke "py.test")))))) (propagated-inputs - `(("python-wcwidth" ,python-wcwidth))) + (list python-wcwidth)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/prompt-toolkit/python-prompt-toolkit") (synopsis "Library for building command line interfaces in Python") (description @@ -16357,9 +16068,7 @@ characters, mouse support, and auto suggestions.") (base32 "0fgacqk73w7s932vy46pan2yp8rvjmlkag20xvaydh9mhf6h85zx")))) (propagated-inputs - `(("python-wcwidth" ,python-wcwidth) - ("python-six" ,python-six) - ("python-pygments" ,python-pygments))) + (list python-wcwidth python-six python-pygments)) (properties '()))) (define-public python2-prompt-toolkit @@ -16385,10 +16094,15 @@ characters, mouse support, and auto suggestions.") (version "0.18.1") (source (origin - (method url-fetch) - (uri (pypi-uri "jedi" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/davidhalter/jedi") + (commit (string-append "v" version)) + (recursive? #true))) + (file-name (git-file-name name version)) (sha256 - (base32 "1as9v6kv49j11al2mzjh72dd5mxxnfcjv0z5dbmwi6aalqk7c4vl")))) + (base32 + "07drmi3ai49jw5n23ibkambcgijqcw073ihypjgxfnks5lv4yqy1")))) (build-system python-build-system) (arguments `(#:phases @@ -16400,12 +16114,9 @@ characters, mouse support, and auto suggestions.") (invoke "python" "-m" "pytest" "-vv")) #t))))) (native-inputs - `(("python-docopt" ,python-docopt) - ("python-colorama" ,python-colorama) - ("python-django" ,python-django-2.2) - ("python-pytest" ,python-pytest))) + (list python-colorama python-docopt python-django-2.2 python-pytest)) (propagated-inputs - `(("python-parso" ,python-parso))) + (list python-parso)) (home-page "https://github.com/davidhalter/jedi") (synopsis "Autocompletion and static analysis library for Python") (description @@ -16413,8 +16124,8 @@ characters, mouse support, and auto suggestions.") Development Environments (@dfn{IDE}s) and text editors. It understands Python on a deeper level than many other static analysis frameworks for Python. -Jedi understands docstrings and you can use Jedi autocompletion in your REPL as -well.") +Jedi understands docstrings and you can use Jedi autocompletion in your REPL +as well.") (license license:expat))) (define-public ptpython @@ -16431,18 +16142,15 @@ well.") (arguments `(#:tests? #f)) ;there are no tests (propagated-inputs - `(("python-appdirs" ,python-appdirs) - ("python-black" ,python-black) - ("python-jedi" ,python-jedi) - ("python-prompt-toolkit" ,python-prompt-toolkit) - ("python-pygments" ,python-pygments))) + (list python-appdirs python-black python-jedi python-prompt-toolkit + python-pygments)) (home-page "https://github.com/jonathanslenders/ptpython") (synopsis "Python Read-Eval-Print-Loop with nice IDE-like features") (description "ptpython is a Python read-eval-print loop with IDE-like features. -It supports syntax highlighting, multiline editing, autocompletion, mouse, -color schemes, bracketed paste, Vi and Emacs keybindings, Chinese characters -etc.") + It supports syntax highlighting, multiline editing, autocompletion, mouse, + color schemes, bracketed paste, Vi and Emacs keybindings, Chinese characters + etc.") (license license:bsd-3) (properties `((python2-variant . ,(delay ptpython-2)))))) @@ -16485,15 +16193,13 @@ etc.") (arguments `(#:test-target "pytest")) (native-inputs - `(("python-easyprocess" ,python-easyprocess) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-easyprocess python-pytest python-pytest-runner)) (home-page "https://github.com/ponty/entrypoint2") (synopsis "Command-line interface for Python modules") (description "@code{entrypoint2} is an easy to use command-line interface for Python -modules based on @code{argparse}. It translates function signature and -documentation to argparse configuration.") + modules based on @code{argparse}. It translates function signature and + documentation to argparse configuration.") (license license:bsd-3))) (define-public python-pyvirtualdisplay @@ -16512,13 +16218,10 @@ documentation to argparse configuration.") ;; FileNotFoundError: [Errno 2] No such file or directory: 'Xvnc'. `(#:tests? #f)) (native-inputs - `(("python-entrypoint2" ,python-entrypoint2) - ("python-psutil" ,python-psutil) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-entrypoint2 python-psutil python-pytest + python-pytest-runner)) (propagated-inputs - `(("python-easyprocess" ,python-easyprocess) - ("python-pillow" ,python-pillow))) + (list python-easyprocess python-pillow)) (home-page "https://github.com/ponty/pyvirtualdisplay") (synopsis "Python wrapper for Xvfb, Xephyr and Xvnc") (description @@ -16540,21 +16243,25 @@ documentation to argparse configuration.") (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-tests + ;; See https://github.com/torproject/stem/issues/56 + (lambda _ + (substitute* "run_tests.py" + (("test\\.task\\.MOCK_VERSION,") + "")))) (replace 'check (lambda _ (invoke "./run_tests.py" "--unit") #t))))) (native-inputs - `(("python-mock" ,python-mock) - ("python-pycodestyle" ,python-pycodestyle) - ("python-pyflakes" ,python-pyflakes))) + (list python-mock python-pycodestyle python-pyflakes)) (home-page "https://stem.torproject.org/") (synopsis "Python controller library that allows applications to interact with Tor") (description "Stem is a Python controller library for Tor. With it you can use Tor's -control protocol to script against the Tor process and read descriptor data -relays publish about themselves.") + control protocol to script against the Tor process and read descriptor data + relays publish about themselves.") (license license:lgpl3))) (define-public python-pyserial @@ -16580,8 +16287,8 @@ relays publish about themselves.") "https://github.com/pyserial/pyserial") (synopsis "Python Serial Port Bindings") (description "@code{pyserial} provide serial port bindings for Python. It -supports different byte sizes, stop bits, parity and flow control with RTS/CTS -and/or Xon/Xoff. The port is accessed in RAW mode.") + supports different byte sizes, stop bits, parity and flow control with RTS/CTS + and/or Xon/Xoff. The port is accessed in RAW mode.") (license license:bsd-3))) (define-public python2-pyserial @@ -16598,17 +16305,17 @@ and/or Xon/Xoff. The port is accessed in RAW mode.") (sha256 (base32 "0cwd2cjz859v6jrm3y6hikfqjyhyfj5vhfjb8vvflvl6791yah8n")))) (build-system python-build-system) - (propagated-inputs `(("python-pyserial" ,python-pyserial))) + (propagated-inputs (list python-pyserial)) (home-page "https://github.com/pyserial/pyserial-asyncio") (synopsis "Pyserial asynchronous I/O extension") (description "This package extends Pyserial with asynchronous I/O -support.") + support.") (license license:bsd-3))) (define-public python-pymodbus (package (name "python-pymodbus") - (version "2.5.2") + (version "2.5.3") (source (origin (method git-fetch) @@ -16618,61 +16325,92 @@ support.") (file-name (git-file-name name version)) (sha256 (base32 - "009blvzi56434f0qfjdg3r8q1flb1jcx2786wi0i0xf81025z9cf")))) + "0kjjrx7xrlx0pf3y67hhr4xvqrly3xzmvf6ic5as61m6z19m7zd5")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (add-after 'unpack 'disable-problematic-tests (lambda _ - ;; The following test module rely on Python's own 'test' - ;; module, which is not distributed in the Python + ;; The following test modules rely on Python's own + ;; 'test' module, which is not distributed in the Python ;; package of Guix. (delete-file "test/test_client_async_asyncio.py") - (delete-file "test/test_client_sync_diag.py"))) + (delete-file "test/test_client_sync_diag.py") + ;; The following test module requires the asynctest + ;; library, abandoned without support for Python 3.9+ + ;; (see: + ;; https://github.com/riptideio/pymodbus/issues/681). + (delete-file "test/test_server_asyncio.py"))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? (invoke "python" "-m" "pytest"))))))) (native-inputs - `(("python-asynctest" ,python-asynctest) - ("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-redis" ,python-redis) - ("python-sqlalchemy" ,python-sqlalchemy) - ("python-tornado" ,python-tornado) - ("python-twisted" ,python-twisted))) - (propagated-inputs - `(("python-pyserial" ,python-pyserial) - ("python-six" ,python-six) - ;; For the REPL. - ("python-aiohttp" ,python-aiohttp) - ("python-click" ,python-click) - ("python-prompt-toolkit" ,python-prompt-toolkit) - ("python-pygments" ,python-pygments) - ("python-pyserial-asyncio" ,python-pyserial-asyncio))) + (list python-mock + python-pytest + python-redis + python-sqlalchemy + python-tornado + python-twisted)) + (propagated-inputs + (list python-pyserial + python-six + ;; For the REPL. + python-aiohttp + python-click + python-prompt-toolkit + python-pygments + python-pyserial-asyncio)) (home-page "https://github.com/riptideio/pymodbus/") (synopsis "Modbus protocol stack in Python") (description "Pymodbus is a full Modbus protocol implementation using -@code{asyncio}, @code{tornado} or @code{twisted} for its asynchronous -communications core. It includes the following @emph{client} features: -@itemize -@item full read/write protocol on discrete and register -@item most of the extended protocol (diagnostic/file/pipe/setting/information) -@item TCP, UDP, Serial ASCII, Serial RTU, and Serial Binary -@item asynchronous and synchronous versions -@item payload builder/decoder utilities -@item pymodbus read eval print loop (REPL). -@end itemize -It also includes the following @emph{server} features: -@itemize -@item can function as a fully implemented Modbus server -@item TCP, UDP, Serial ASCII, Serial RTU, and Serial Binary -@item asynchronous and synchronous versions -@item full server control context (device information, counters, etc) -@item a number of backing contexts (database, redis, sqlite, a slave device). -@end itemize") + @code{asyncio}, @code{tornado} or @code{twisted} for its asynchronous + communications core. It includes the following @emph{client} features: + @itemize + @item full read/write protocol on discrete and register + @item most of the extended protocol (diagnostic/file/pipe/setting/information) + @item TCP, UDP, Serial ASCII, Serial RTU, and Serial Binary + @item asynchronous and synchronous versions + @item payload builder/decoder utilities + @item pymodbus read eval print loop (REPL). + @end itemize + It also includes the following @emph{server} features: + @itemize + @item can function as a fully implemented Modbus server + @item TCP, UDP, Serial ASCII, Serial RTU, and Serial Binary + @item asynchronous and synchronous versions + @item full server control context (device information, counters, etc) + @item a number of backing contexts (database, redis, sqlite, a slave device). + @end itemize") (license license:bsd-3))) +(define-public python-kivy-garden + (package + (name "python-kivy-garden") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "kivy-garden" version)) + (sha256 + (base32 "0wkcpr2zc1q5jb0bi7v2dgc0vs5h1y7j42mviyh764j2i0kz8mn2")))) + (build-system python-build-system) + (arguments + '(#:phases (modify-phases %standard-phases + (add-after 'install 'remove-bat-file + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (delete-file + (string-append out "/bin/garden.bat")))))))) + (propagated-inputs + (list python-requests)) + (home-page "https://github.com/kivy-garden/garden") + (synopsis "Garden tool for Kivy flowers") + (description + "This package provides the @command{garden} command to install packages +for Kivy, the multitouch application platform.") + (license license:expat))) + (define-public python-kivy (package (name "python-kivy") @@ -16693,23 +16431,25 @@ It also includes the following @emph{server} features: (add-after 'patch-generated-file-shebangs 'set-sdl-paths (lambda* (#:key inputs #:allow-other-keys) (setenv "KIVY_SDL2_PATH" - (string-append (assoc-ref inputs "sdl-union") - "/include/SDL2")) - #t))))) + (search-input-directory inputs "/include/SDL2")))) + (add-before 'sanity-check 'set-home + (lambda _ + ;; 'kivy/__init__.py' wants to create $HOME/.kivy. + (setenv "HOME" (getcwd))))))) (native-inputs - `(("pkg-config" ,pkg-config) - ("python-cython" ,python-cython))) + (list pkg-config python-cython)) (inputs - `(("gstreamer" ,gstreamer) - ("mesa" ,mesa) - ("sdl-union" - ,(sdl-union (list sdl2 sdl2-image sdl2-mixer sdl2-ttf))))) + (list gstreamer + mesa + (sdl-union (list sdl2 sdl2-image sdl2-mixer sdl2-ttf)) + python-docutils + python-kivy-garden + python-pygments)) (home-page "https://kivy.org") - (synopsis - "Multitouch application framework") + (synopsis "Multitouch application framework") (description - "A software library for rapid development of -hardware-accelerated multitouch applications.") + "Kivy is a software library for rapid development of hardware-accelerated +multitouch applications.") (license license:expat))) (define-public python2-kivy @@ -16737,12 +16477,11 @@ hardware-accelerated multitouch applications.") (("average_size=512") "")) #t))))) (propagated-inputs - `(("python-chardet" ,python-chardet) - ("python-hypothesis" ,python-hypothesis))) + (list python-chardet python-hypothesis)) (home-page "https://github.com/audreyr/binaryornot") (synopsis "Package to check if a file is binary or text") (description "Ultra-lightweight pure Python package to check if a file is -binary or text.") + binary or text.") (license license:bsd-3) (properties `((python2-variant . ,(delay python2-binaryornot)))))) @@ -16770,20 +16509,15 @@ binary or text.") (arguments `(#:phases (modify-phases %standard-phases - (add-before 'check 'set-pythonpath + (add-before 'check 'set-home (lambda _ - (setenv "PYTHONPATH" - (string-append - (getcwd) "/src/" - ":" (getenv "PYTHONPATH"))) (setenv "HOME" "")))))) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-nose" ,python-nose))) + (list python-coverage python-nose)) (home-page "https://github.com/ReFirmLabs/binwalk") (synopsis "Firmware analysis tool") (description "Binwalk is a tool for analyzing, reverse engineering, and -extracting firmware images") + extracting firmware images") (license license:expat))) (define-public python-binwalk @@ -16805,18 +16539,15 @@ extracting firmware images") ;; TODO Try packaging these resources. #:tests? #f)) (propagated-inputs - `(("python-click" ,python-click) - ("python-joblib" ,python-joblib) - ("python-regex" ,python-regex) - ("python-tqdm" ,python-tqdm))) + (list python-click python-joblib python-regex python-tqdm)) (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (home-page "http://nltk.org/") (synopsis "Natural Language Toolkit") (description "It provides interfaces to over 50 corpora and lexical -resources such as WordNet, along with a suite of text processing libraries -for classification, tokenization, stemming, tagging, parsing, and semantic -reasoning, wrappers for natural language processing libraries.") + resources such as WordNet, along with a suite of text processing libraries + for classification, tokenization, stemming, tagging, parsing, and semantic + reasoning, wrappers for natural language processing libraries.") (license license:asl2.0))) ;; Versions >=3.5 breaks backward-compatibility, @@ -16831,7 +16562,7 @@ reasoning, wrappers for natural language processing libraries.") (uri (pypi-uri "nltk" version ".zip")) (sha256 (base32 "153x2clrnigs74jdgnn3qmljdjj4gprmvpdvh49i18ls4m8mbm5y")))) - (propagated-inputs `(("python-six" ,python-six))))) + (propagated-inputs (list python-six)))) (define-public python2-nltk (package-with-python2 python-nltk)) @@ -16848,7 +16579,7 @@ reasoning, wrappers for natural language processing libraries.") "0zis4707r9hdg5qgkhp3wss9camr9h56ixyfc8n9dxwlnnly4x4c")))) (build-system python-build-system) (propagated-inputs - `(("python-certifi" ,python-certifi))) + (list python-certifi)) (home-page "https://github.com/mongodb/mongo-python-driver") (synopsis "Python driver for MongoDB") (description "Python driver for MongoDB.") @@ -16872,13 +16603,12 @@ reasoning, wrappers for natural language processing libraries.") (arguments '(#:tests? #f)) ; The tests are not distributed (propagated-inputs - `(("python-requests" ,python-requests) - ("python-six" ,python-six))) + (list python-requests python-six)) (home-page "https://github.com/cablehead/python-consul") (synopsis "Python client for Consul") (description "Python client for @url{http://www.consul.io/,Consul}, a tool for service -discovery, monitoring and configuration.") + discovery, monitoring and configuration.") (license license:expat))) (define-public python2-consul @@ -16899,7 +16629,7 @@ discovery, monitoring and configuration.") (base32 "0xdqskycznqc7mfp60bhw1zq8wx7yx1dvmbq3brnm1dx3xnqa0zd")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (arguments ;; The tests require a bunch of not very nice packages with fixed ;; version requirements (e.g. python-coveralls). @@ -16927,18 +16657,16 @@ discovery, monitoring and configuration.") (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" (string-append "./build/lib:" - (getenv "PYTHONPATH"))) (invoke "pytest" "-vv")))))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-defusedxml" ,python-defusedxml))) + (list python-defusedxml)) (home-page "https://github.com/eea/odfpy") (synopsis "Python API and tools to manipulate OpenDocument files") (description "Collection of libraries and utility programs written in -Python to manipulate OpenDocument 1.2 files.") + Python to manipulate OpenDocument 1.2 files.") (license ;; The software is mainly dual GPL2+ and ASL2.0, but includes a ;; number of files with other licenses. @@ -16959,42 +16687,27 @@ Python to manipulate OpenDocument 1.2 files.") "00y49bfsi7rrsd1s42gc2w95a6arl9ipdsx2493hr0v54fj07ih0")))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (srfi srfi-1) - (srfi srfi-26) - (ice-9 ftw)) - #:phases + `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append - cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-v"))))))) + (invoke "pytest" "-v")))))) (native-inputs - `(("python-hypothesis" ,python-hypothesis) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-mock" ,python-pytest-mock) - ("python-pytest" ,python-pytest))) + (list python-hypothesis python-pytest-cov python-pytest-mock + python-pytest)) (propagated-inputs ; TODO: Add python-fastnumbers. - `(("python-pyicu" ,python-pyicu))) + (list python-pyicu)) (home-page "https://github.com/SethMMorton/natsort") (synopsis "Natural sorting for python and shell") (description "Natsort lets you apply natural sorting on lists instead of -lexicographical. If you use the built-in @code{sorted} method in python -on a list such as @code{[@code{a20}, @code{a9}, @code{a1}, @code{a4}, -@code{a10}]}, it would be returned as @code{[@code{a1}, @code{a10}, @code{a20}, -@code{a4}, @code{a9}]}. Natsort provides a function @code{natsorted} that -identifies numbers and sorts them separately from strings. It can also sort -version numbers, real numbers, mixed types and more, and comes with a shell -command @command{natsort} that exposes this functionality in the command line.") + lexicographical. If you use the built-in @code{sorted} method in python + on a list such as @code{[@code{a20}, @code{a9}, @code{a1}, @code{a4}, + @code{a10}]}, it would be returned as @code{[@code{a1}, @code{a10}, @code{a20}, + @code{a4}, @code{a9}]}. Natsort provides a function @code{natsorted} that + identifies numbers and sorts them separately from strings. It can also sort + version numbers, real numbers, mixed types and more, and comes with a shell + command @command{natsort} that exposes this functionality in the command line.") (license license:expat))) (define-public glances @@ -17020,14 +16733,13 @@ command @command{natsort} that exposes this functionality in the command line.") #t)))) (build-system python-build-system) (propagated-inputs - `(("python-future" ,python-future) - ("python-psutil" ,python-psutil))) + (list python-future python-psutil)) (home-page "https://github.com/nicolargo/glances") (synopsis "Cross-platform curses-based monitoring tool") (description "Glances is a curses-based monitoring tool for a wide variety of platforms. -Glances uses the PsUtil library to get information from your system. It -monitors CPU, load, memory, network bandwidth, disk I/O, disk use, and more.") + Glances uses the PsUtil library to get information from your system. It + monitors CPU, load, memory, network bandwidth, disk I/O, disk use, and more.") (license license:lgpl3+))) (define-public python-graphql-core @@ -17052,19 +16764,16 @@ monitors CPU, load, memory, network bandwidth, disk I/O, disk use, and more.") (("'gevent==1.1rc1'") "'gevent'")) #t))))) (native-inputs - `(("python-gevent" ,python-gevent) - ("python-mock" ,python-mock) - ("python-pytest-mock" ,python-pytest-mock))) + (list python-gevent python-mock python-pytest-mock)) (propagated-inputs - `(("python-promise" ,python-promise) - ("python-six" ,python-six))) + (list python-promise python-six)) (home-page "https://github.com/graphql-python/graphql-core") (synopsis "GraphQL implementation for Python") (description "GraphQL implementation for Python. GraphQL is a data query language and -runtime designed and used to request and deliver data to mobile and web apps. -This library is a port of @url{https://github.com/graphql/graphql-js,graphql-js} -to Python.") + runtime designed and used to request and deliver data to mobile and web apps. + This library is a port of @url{https://github.com/graphql/graphql-js,graphql-js} + to Python.") (license license:expat))) (define-public python-graphql-relay @@ -17080,78 +16789,51 @@ to Python.") "1d70vwam9gjhx7fqzsa03x7lc6ivcqki5r9pk8m7rslmb7pagmbh")))) (build-system python-build-system) (arguments - '(#:tests? #f)) ; The tests are not distributed + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "tests"))))))) + (native-inputs + (list + python-pytest + python-pytest-asyncio)) (propagated-inputs - `(("python-graphql-core" ,python-graphql-core))) + (list python-graphql-core)) (home-page "https://github.com/graphql-python/graphql-relay-py") (synopsis "Relay implementation for Python") (description "This is a library to allow the easy creation of Relay-compliant servers -using the GraphQL Python reference implementation of a GraphQL server. It -should be noted that the code is a exact port of the original -@url{https://github.com/graphql/graphql-relay-js,graphql-relay js implementation} -from Facebook.") + using the GraphQL Python reference implementation of a GraphQL server. It + should be noted that the code is a exact port of the original + @url{https://github.com/graphql/graphql-relay-js,graphql-relay js implementation} + from Facebook.") (license license:expat))) (define-public python-graphene (package (name "python-graphene") - (version "0.10.2") + (version "3.0") (source (origin (method url-fetch) (uri (pypi-uri "graphene" version)) (sha256 (base32 - "09zhac7igh9ixdz0ay6csy35b40l1jwbf2wrbxmgxwfhy51iy06q")))) + "08m1n2ydk48c18cvl8474v3pwwacjl1vgq61m9qs00122mp0cj5g")))) (build-system python-build-system) (propagated-inputs - `(("python-graphql-core" ,python-graphql-core) - ("python-graphql-relay" ,python-graphql-relay) - ("python-iso8601" ,python-iso8601) - ("python-promise" ,python-promise) - ("python-six" ,python-six))) + (list python-graphql-core python-graphql-relay python-aniso8601 + python-promise python-six)) (arguments `(#:tests? #f)) ; no tests/ in the PyPI tarball (home-page "https://graphene-python.org/") (synopsis "GraphQL Framework for Python") (description "Graphene is a Python library for building GraphQL schemas/types. -A GraphQL schema describes your data model, and provides a GraphQL server -with an associated set of resolve methods that know how to fetch data.") - (license license:expat))) - -(define-public python-nautilus - (package - (name "python-nautilus") - (version "0.4.9") - (source - (origin - (method url-fetch) - (uri (pypi-uri "nautilus" version)) - (sha256 - (base32 - "01hwzjc1zshk4vvxrcghm398fpy4jls66dyz06g07mrwqif8878p")))) - (build-system python-build-system) - (arguments `(#:tests? #f)) ; fails to import test modules - (propagated-inputs - `(("python-bcrypt" ,python-bcrypt) - ("python-click" ,python-click) - ("python-consul" ,python-consul) - ("python-graphene" ,python-graphene) - ("python-jinja2" ,python-jinja2) - ("python-peewee" ,python-peewee) - ("python-pika" ,python-pika) - ("python-tornado" ,python-tornado) - ("python-wtforms" ,python-wtforms))) - (native-inputs - `(("python-nose2" ,python-nose2))) - (home-page "https://github.com/AlecAivazis/nautilus") - (synopsis "Library for creating microservice applications") - (description - "Nautilus is a framework for flux based microservices that looks to -provide extendible implementations of common aspects of a cloud so that you can -focus on building massively scalable web applications.") + A GraphQL schema describes your data model, and provides a GraphQL server + with an associated set of resolve methods that know how to fetch data.") (license license:expat))) (define-public python-random2 @@ -17163,20 +16845,22 @@ focus on building massively scalable web applications.") (uri (pypi-uri "random2" version ".zip")) (sha256 (base32 - "01y0s4747plsx8fdnxy0nz83dp69naddz58m81r9h0s1qfm31b9l")))) + "01y0s4747plsx8fdnxy0nz83dp69naddz58m81r9h0s1qfm31b9l")) + (patches + (search-patches "python-random2-getrandbits-test.patch")))) (build-system python-build-system) - (native-inputs `(("unzip" ,unzip))) + (native-inputs (list unzip)) (home-page "http://pypi.python.org/pypi/random2") (synopsis "Python 3 version of the Python 2 @code{random} module") (description "This package provides a Python 3 ported version of Python 2.7’s -@code{random} module. It has also been back-ported to work in Python 2.6. + @code{random} module. It has also been back-ported to work in Python 2.6. -In Python 3, the implementation of @code{randrange()} was changed, so that -even with the same seed you get different sequences in Python 2 and 3. + In Python 3, the implementation of @code{randrange()} was changed, so that + even with the same seed you get different sequences in Python 2 and 3. -This package closes that gap, allowing stable random number generation -between the different Python versions.") + This package closes that gap, allowing stable random number generation + between the different Python versions.") (license license:psfl))) (define-public python2-random2 @@ -17199,8 +16883,8 @@ between the different Python versions.") (home-page "https://github.com/shibukawa/snowball_py") (synopsis "Snowball stemming library collection for Python") (description "This package provides 16 word stemmer algorithms generated -from Snowball algorithms. It includes the 15 original ones plus the Poerter -English stemmer.") + from Snowball algorithms. It includes the 15 original ones plus the Poerter + English stemmer.") (license license:bsd-3))) (define-public python2-snowballstemmer @@ -17243,17 +16927,17 @@ English stemmer.") ;; the Makefile will build anyway (invoke "make" "check")))))) (native-inputs - `(("procps" ,procps))) ; required for tests + (list procps)) ; required for tests (home-page "https://github.com/dvarrazzo/py-setproctitle") (synopsis "Setproctitle implementation for Python to customize the process title") (description "The library allows a process to change its title (as displayed -by system tools such as ps and top). + by system tools such as ps and top). -Changing the title is mostly useful in multi-process systems, for -example when a master process is forked: changing the children's title -allows identifying the task each process is busy with. The technique -is used by PostgreSQL and the OpenSSH Server for example.") + Changing the title is mostly useful in multi-process systems, for + example when a master process is forked: changing the children's title + allows identifying the task each process is busy with. The technique + is used by PostgreSQL and the OpenSSH Server for example.") (license license:bsd-3) (properties `((python2-variant . ,(delay python2-setproctitle)))))) @@ -17287,21 +16971,17 @@ is used by PostgreSQL and the OpenSSH Server for example.") (delete-file "tests/__init__.py"))) (replace 'check (lambda _ - ;; Extend PYTHONPATH so the built package will be found. - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) (invoke "py.test" "-vv" )))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/jamesturk/validictory") (synopsis "General purpose Python data validator") (description "It allows validation of arbitrary Python data structures. -The schema format is based on the JSON Schema -proposal (http://json-schema.org), so combined with json the library is also -useful as a validator for JSON data.") + The schema format is based on the JSON Schema + proposal (http://json-schema.org), so combined with json the library is also + useful as a validator for JSON data.") (license license:expat))) (define-public python2-validictory @@ -17319,24 +16999,14 @@ useful as a validator for JSON data.") (base32 "090vdksbz341f7ljvr0zswblw4lspa8qaiikzyjkf318arpxmil9")))) (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'check 'set-pythonpath - (lambda _ - (setenv "PYTHONPATH" - (string-append - (getcwd) "/test/" - ":" (getenv "PYTHONPATH"))) - #t))))) (home-page "https://github.com/eliben/pyelftools") (synopsis "Analyze binary and library file information") (description "This Python library provides interfaces for parsing and -analyzing two binary and library file formats; the Executable and Linking -Format (ELF), and debugging information in the Debugging With Attributed -Record Format (DWARF).") + analyzing two binary and library file formats ; the Executable and Linking + Format (ELF), and debugging information in the Debugging With Attributed + Record Format (DWARF).") (license license:public-domain))) (define-public python-pyev @@ -17357,13 +17027,12 @@ Record Format (DWARF).") (modify-phases %standard-phases (add-after 'unpack 'patch (lambda* (#:key inputs #:allow-other-keys) - (let ((libev (string-append (assoc-ref inputs "libev") - "/lib/libev.so.4"))) + (let ((libev (search-input-file inputs "/lib/libev.so.4"))) (substitute* "setup.py" (("libev_dll_name = find_library\\(\\\"ev\\\"\\)") (string-append "libev_dll_name = \"" libev "\""))))))))) (inputs - `(("libev" ,libev))) + (list libev)) (home-page "https://github.com/gabrielfalcao/pyev") (synopsis "Python libev interface") (description "Pyev provides a Python interface to libev.") @@ -17388,7 +17057,7 @@ Record Format (DWARF).") (synopsis "Gets image size of files in various formats in Python") (description "This package allows determination of image size from -PNG, JPEG, JPEG2000 and GIF files in pure Python.") + PNG, JPEG, JPEG2000 and GIF files in pure Python.") (license license:expat))) (define-public python2-imagesize @@ -17431,20 +17100,20 @@ PNG, JPEG, JPEG2000 and GIF files in pure Python.") (patches (search-patches "python-argcomplete-1.11.1-fish31.patch")))) (build-system python-build-system) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-flake8" ,python-flake8) - ("python-pexpect" ,python-pexpect) - ("python-wheel" ,python-wheel) - ("tcsh" ,tcsh) - ("fish" ,fish) - ("bash-full" ,bash))) ;full Bash for 'test_file_completion' + (list python-coverage + python-flake8 + python-pexpect + python-wheel + tcsh + fish + bash)) ;full Bash for 'test_file_completion' (home-page "https://github.com/kislyuk/argcomplete") (synopsis "Shell tab completion for Python argparse") (description "argcomplete provides extensible command line tab completion -of arguments and options for Python scripts using @code{argparse}. It's -particularly useful for programs with many options or sub-parsers that can -dynamically suggest completions; for example, when browsing resources over the -network.") + of arguments and options for Python scripts using @code{argparse}. It's + particularly useful for programs with many options or sub-parsers that can + dynamically suggest completions ; for example, when browsing resources over the + network.") (license license:asl2.0) (properties `((python2-variant . ,(delay python2-argcomplete)))))) @@ -17481,7 +17150,7 @@ network.") (lambda _ (invoke "py.test")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/sprymix/csscompressor") (synopsis "Python port of YUI CSS Compressor") (description @@ -17509,7 +17178,7 @@ network.") (home-page "http://opensource.perlig.de/rcssmin/") (synopsis "CSS Minifier") (description "The minifier is based on the semantics of the YUI compressor, -which itself is based on the rule list by Isaac Schlueter.") + which itself is based on the rule list by Isaac Schlueter.") (license license:asl2.0))) (define-public python-rjsmin @@ -17540,36 +17209,36 @@ which itself is based on the rule list by Isaac Schlueter.") (invoke "py.test" "-vv" "tests") #t)))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "http://opensource.perlig.de/rjsmin/") (synopsis "Javascript Minifier") (description "@code{rJSmin} is a javascript minifier written in Python. The -minifier is based on the semantics of jsmin.c by Douglas Crockford. The module -is a re-implementation aiming for speed, so it can be used at runtime (rather -than during a preprocessing step).") + minifier is based on the semantics of jsmin.c by Douglas Crockford. The module + is a re-implementation aiming for speed, so it can be used at runtime (rather + than during a preprocessing step).") (license license:asl2.0))) (define-public python-xopen (package (name "python-xopen") - (version "0.5.0") + (version "0.8.2") (source - (origin - (method url-fetch) - (uri (pypi-uri "xopen" version)) - (sha256 - (base32 - "17xbrgi23l87yg6h0qcknssp2q812miiy33qw6v45v5gx0jwv5xh")))) + (origin + (method url-fetch) + (uri (pypi-uri "xopen" version)) + (sha256 + (base32 + "1xrlcnd6fri3w97zzzp6vyk4l21yq1lc8r4wksi06hgpkbh4jdq0")))) (build-system python-build-system) (propagated-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) (home-page "https://github.com/marcelm/xopen/") (synopsis "Open compressed files transparently") (description "This module provides an @code{xopen} function that works like -Python's built-in @code{open} function, but can also deal with compressed files. -Supported compression formats are gzip, bzip2 and, xz, and are automatically -recognized by their file extensions. The focus is on being as efficient as -possible on all supported Python versions.") + Python's built-in @code{open} function, but can also deal with compressed files. + Supported compression formats are gzip, bzip2 and, xz, and are automatically + recognized by their file extensions. The focus is on being as efficient as + possible on all supported Python versions.") (license license:expat))) (define-public python2-xopen @@ -17592,71 +17261,53 @@ possible on all supported Python versions.") "0ar5dqjnqaw0c17mymd6xgd81jn9br9fblawr0x438v1571bkaya")))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26)) - #:phases (modify-phases %standard-phases + `(#:phases (modify-phases %standard-phases (add-after 'unpack 'use-absolute-python (lambda _ (substitute* "Cheetah/CheetahWrapper.py" (("#!/usr/bin/env python") - (string-append "#!" (which "python")))) - #t)) + (string-append "#!" (which "python")))))) (add-after 'unpack 'fix-tests (lambda _ (substitute* "Cheetah/Tests/ImportHooks.py" (("os.path.dirname\\(__file__\\)") - (string-append "'" (getcwd) "/Cheetah/Tests'"))) - #t)) + (string-append "'" (getcwd) "/Cheetah/Tests'"))))) (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append - cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" (getenv "PYTHONPATH"))) - (setenv "PATH" - (string-append (getenv "PATH") - ":" cwd "/bin")) - (setenv "TMPDIR" "/tmp") - - (substitute* "Cheetah/Tests/Test.py" - (("unittest.TextTestRunner\\(\\)") - "unittest.TextTestRunner(verbosity=2)")) - - (invoke "python" "Cheetah/Tests/Test.py"))))))) - (propagated-inputs - `(("python-markdown" ,python-markdown))) ;optional + (setenv "TMPDIR" "/tmp") + (substitute* "Cheetah/Tests/Test.py" + (("unittest.TextTestRunner\\(\\)") + "unittest.TextTestRunner(verbosity=2)")) + + (invoke "python" "Cheetah/Tests/Test.py")))))) + (propagated-inputs + (list python-markdown)) ;optional (home-page "https://cheetahtemplate.org/") (synopsis "Template engine") (description "Cheetah is a text-based template engine and Python code -generator. - -Cheetah can be used as a standalone templating utility or referenced as -a library from other Python applications. It has many potential uses, -but web developers looking for a viable alternative to ASP, JSP, PHP and -PSP are expected to be its principle user group. - -Features: -@enumerate -@item Generates HTML, SGML, XML, SQL, Postscript, form email, LaTeX, or any other - text-based format. -@item Cleanly separates content, graphic design, and program code. -@item Blends the power and flexibility of Python with a simple template language - that non-programmers can understand. -@item Gives template writers full access to any Python data structure, module, - function, object, or method in their templates. -@item Makes code reuse easy by providing an object-orientated interface to - templates that is accessible from Python code or other Cheetah templates. - One template can subclass another and selectively reimplement sections of it. -@item Provides a simple, yet powerful, caching mechanism that can dramatically - improve the performance of a dynamic website. -@item Compiles templates into optimized, yet readable, Python code. -@end enumerate") + generator. + + Cheetah can be used as a standalone templating utility or referenced as + a library from other Python applications. It has many potential uses, + but web developers looking for a viable alternative to ASP, JSP, PHP and + PSP are expected to be its principle user group. + + Features: + @enumerate + @item Generates HTML, SGML, XML, SQL, Postscript, form email, LaTeX, or any other + text-based format. + @item Cleanly separates content, graphic design, and program code. + @item Blends the power and flexibility of Python with a simple template language + that non-programmers can understand. + @item Gives template writers full access to any Python data structure, module, + function, object, or method in their templates. + @item Makes code reuse easy by providing an object-orientated interface to + templates that is accessible from Python code or other Cheetah templates. + One template can subclass another and selectively reimplement sections of it. + @item Provides a simple, yet powerful, caching mechanism that can dramatically + improve the performance of a dynamic website. + @item Compiles templates into optimized, yet readable, Python code. + @end enumerate") (license (license:x11-style "file://LICENSE")))) (define-public python2-cheetah @@ -17694,16 +17345,13 @@ Features: (setenv "PYTHONHASHSEED" "random") #t))))) (propagated-inputs - `(("python-fastimport" ,python-fastimport) - ("python-urllib3" ,python-urllib3))) + (list python-fastimport python-urllib3)) (native-inputs - `(("python-mock" ,python-mock) - ("python-geventhttpclient" ,python-geventhttpclient) - ("git" ,git))) + (list python-mock python-geventhttpclient git)) (home-page "https://www.dulwich.io/") (synopsis "Git implementation in Python") (description "Dulwich is an implementation of the Git file formats and -protocols written in pure Python.") + protocols written in pure Python.") ;; Can be used with either license. (license (list license:asl2.0 license:gpl2+)))) @@ -17724,22 +17372,19 @@ protocols written in pure Python.") (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) (invoke "python" "test/test_pbkdf2.py")))))) (propagated-inputs - `(("python-pycrypto" ,python-pycrypto))) ; optional + (list python-pycrypto)) ; optional (home-page "https://www.dlitz.net/software/python-pbkdf2/") (synopsis "Password-based key derivation") (description "This module implements the password-based key derivation -function, PBKDF2, specified in RSA PKCS#5 v2.0. + function, PBKDF2, specified in RSA PKCS#5 v2.0. -PKCS#5 v2.0 Password-Based Key Derivation is a key derivation function which -is part of the RSA Public Key Cryptography Standards series. The provided -implementation takes a password or a passphrase and a salt value (and -optionally a iteration count, a digest module, and a MAC module) and provides -a file-like object from which an arbitrarily-sized key can be read.") + PKCS#5 v2.0 Password-Based Key Derivation is a key derivation function which + is part of the RSA Public Key Cryptography Standards series. The provided + implementation takes a password or a passphrase and a salt value (and + optionally a iteration count, a digest module, and a MAC module) and provides + a file-like object from which an arbitrarily-sized key can be read.") (license license:expat))) (define-public python2-pbkdf2 @@ -17760,18 +17405,18 @@ a file-like object from which an arbitrarily-sized key can be read.") ;; FIXME: Tests require packaging 'pymaging'. '(#:tests? #f)) (propagated-inputs - `(("python-lxml" ,python-lxml) ; for SVG output - ("python-pillow" ,python-pillow) ; for PNG output - ("python-six" ,python-six))) + (list python-lxml ; for SVG output + python-pillow ; for PNG output + python-six)) (home-page "https://github.com/lincolnloop/python-qrcode") (synopsis "QR Code image generator") (description "This package provides a pure Python QR Code generator -module. It uses the Python Imaging Library (PIL) to allow for the generation -of QR Codes. + module. It uses the Python Imaging Library (PIL) to allow for the generation + of QR Codes. -In addition this package provides a command line tool to generate QR codes and -either write these QR codes to a file or do the output as ascii art at the -console.") + In addition this package provides a command line tool to generate QR codes and + either write these QR codes to a file or do the output as ascii art at the + console.") (license license:bsd-3))) (define-public python2-qrcode @@ -17790,12 +17435,12 @@ console.") "0vzy6gd60l79ff750scl0sz48r1laalkl6md6dwzah4dcadgn5qv")))) (build-system python-build-system) (propagated-inputs - `(("python-docutils" ,python-docutils))) + (list python-docutils)) (home-page "https://github.com/Snaipe/python-rst-to-ansi") (synopsis "Convert RST to ANSI-decorated console output") (description "Python module dedicated to rendering RST (reStructuredText) documents -to ansi-escaped strings suitable for display in a terminal.") + to ansi-escaped strings suitable for display in a terminal.") (license license:expat))) (define-public python-ansi2html @@ -17811,15 +17456,14 @@ to ansi-escaped strings suitable for display in a terminal.") "1wa00zffprb78w1mqq90dk47czz1knanys2a40zbw2vyapd5lp9y")))) (build-system python-build-system) (native-inputs - `(("python-mock" ,python-mock) - ("python-nose" ,python-nose))) + (list python-mock python-nose)) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://github.com/ralphbean/ansi2html") (synopsis "Convert ANSI-decorated console output to HTML") (description "@command{ansi2html} is a Python library and command line utility for -converting text with ANSI color codes to HTML or LaTeX.") + converting text with ANSI color codes to HTML or LaTeX.") (license license:gpl3+))) (define-public python2-ansi2html @@ -17843,10 +17487,10 @@ converting text with ANSI color codes to HTML or LaTeX.") (synopsis "Terminal framework API") (description "Easy ANSI is a terminal framework API to give you an easy way to use -colors, cursor control movements, and line/box drawing. It is not meant as a -replacement to more full-featured frameworks (such as curses or urwid), but as -a tool to quickly create nice-looking screens in your terminal window. You -can even create animations with the cursor controls.") + colors, cursor control movements, and line/box drawing. It is not meant as a + replacement to more full-featured frameworks (such as curses or urwid), but as + a tool to quickly create nice-looking screens in your terminal window. You + can even create animations with the cursor controls.") (license license:expat))) (define-public python-ddt @@ -17862,15 +17506,15 @@ can even create animations with the cursor controls.") "0y2k756qjz1rhpivi60hy29b4bf0bh3wck39i1mn6pkil9k779k4")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-pyyaml" ,python-pyyaml))) + (list python-pyyaml)) (home-page "https://github.com/datadriventests/ddt") (synopsis "Data-Driven Tests") (description "Data-Driven Tests (@dfn{DDT}) allow you to multiply one test case by -running it with different test data, and make it appear as multiple test -cases.") + running it with different test data, and make it appear as multiple test + cases.") (license license:expat))) (define-public python-pycountry @@ -17889,16 +17533,16 @@ cases.") (synopsis "ISO databases for languages, countries, currencies, etc.") (description "@code{pycountry} provides the ISO databases for the standards: -@enumerate -@item 639-3 (Languages) -@item 3166 (Countries) -@item 3166-3 (Deleted Countries) -@item 3166-2 (Subdivisions of countries) -@item 4217 (Currencies) -@item 15924 (Scripts) -@end enumerate -It includes a copy from Debian’s pkg-isocodes and makes the data accessible -through a Python API.") + @enumerate + @item 639-3 (Languages) + @item 3166 (Countries) + @item 3166-3 (Deleted Countries) + @item 3166-2 (Subdivisions of countries) + @item 4217 (Currencies) + @item 15924 (Scripts) + @end enumerate + It includes a copy from Debian’s pkg-isocodes and makes the data accessible + through a Python API.") (license license:lgpl2.1+))) (define-public python2-pycountry @@ -17918,14 +17562,14 @@ through a Python API.") ;; TODO: Unundle picosat. http://fmv.jku.at/picosat/ (build-system python-build-system) (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (home-page "https://github.com/ContinuumIO/pycosat") (synopsis "Bindings to picosat (a SAT solver)") (description "This package provides efficient Python bindings to @code{picosat} on -the C level. When importing pycosat, the @code{picosat} solver becomes part -of the Python process itself. @code{picosat} is a @dfn{Boolean Satisfiability -Problem} (SAT) solver.") + the C level. When importing pycosat, the @code{picosat} solver becomes part + of the Python process itself. @code{picosat} is a @dfn{Boolean Satisfiability + Problem} (SAT) solver.") (license license:expat))) (define-public python2-pycosat @@ -17956,13 +17600,13 @@ Problem} (SAT) solver.") (synopsis "Version of dict that keeps keys in insertion order") (description "This is an implementation of an ordered dictionary with @dfn{Key -Insertion Order} (KIO: updates of values do not affect the position of the -key), @dfn{Key Value Insertion Order} (KVIO, an existing key's position is -removed and put at the back). The standard library module @code{OrderedDict}, -implemented later, implements a subset of @code{ordereddict} functionality. -Sorted dictionaries are also provided. Currently only with @dfn{Key Sorted -Order} (KSO, no sorting function can be specified, but a transform can be -specified to apply on the key before comparison (e.g. @code{string.lower})).") + Insertion Order} (KIO: updates of values do not affect the position of the + key), @dfn{Key Value Insertion Order} (KVIO, an existing key's position is + removed and put at the back). The standard library module @code{OrderedDict}, + implemented later, implements a subset of @code{ordereddict} functionality. + Sorted dictionaries are also provided. Currently only with @dfn{Key Sorted + Order} (KSO, no sorting function can be specified, but a transform can be + specified to apply on the key before comparison (e.g. @code{string.lower})).") (license license:expat))) (define-public python-pypeg2 @@ -17977,15 +17621,15 @@ specified to apply on the key before comparison (e.g. @code{string.lower})).") (base32 "0v8ziaam2r637v94ra4dbjw6jzxz99gs5x4i585kgag1v204yb9b")))) (build-system python-build-system) - (propagated-inputs `(("python-lxml" ,python-lxml))) + (propagated-inputs (list python-lxml)) (arguments ;;https://bitbucket.org/fdik/pypeg/issues/36/test-failures-on-py35 '(#:tests? #f)) (home-page "https://fdik.org/pyPEG/") (synopsis "Parsing Expression Grammars in Python") (description "PyPEG is an intrinsic parser interpreter framework for -Python. It is based on Parsing Expression Grammars, PEG. With pyPEG you can -parse many formal languages.") + Python. It is based on Parsing Expression Grammars, PEG. With pyPEG you can + parse many formal languages.") (license license:gpl2))) (define-public python-incremental @@ -18003,7 +17647,7 @@ parse many formal languages.") (home-page "https://github.com/hawkowl/incremental") (synopsis "Library for versioning Python projects") (description "Incremental is a small library that versions your Python -projects.") + projects.") (license license:expat))) (define-public python2-incremental @@ -18013,39 +17657,50 @@ projects.") (package (name "python-invoke") (home-page "https://www.pyinvoke.org/") - (version "1.5.0") + (version "1.6.0") (source (origin (method url-fetch) (uri (pypi-uri "invoke" version)) (sha256 (base32 - "0l16v7zcbgi36z6pvmdrs5q4ks8lalcafi5d9nhrpcjzbc3n1igh")))) + "1lsql9daabfr31c7syva5myc5bka45k57ygs9fliv63qrwp1wk9p")))) (build-system python-build-system) (arguments ;; XXX: Requires many dependencies that are not yet in Guix. `(#:tests? #f #:phases (modify-phases %standard-phases + (add-after 'unpack 'delete-python2-code + (lambda _ + (delete-file-recursively "invoke/vendor/yaml2"))) (add-after 'unpack 'fix-bash-path (lambda* (#:key inputs #:allow-other-keys) (let ((bash (assoc-ref inputs "bash"))) (substitute* "invoke/config.py" (("shell = \"/bin/bash\"") - (string-append "shell = \"" bash "/bin/bash\"")) - ) - #t)))))) + (string-append "shell = \"" bash "/bin/bash\""))))))))) (inputs `(("bash" ,bash-minimal))) (synopsis "Pythonic task execution") (description "Invoke is a Python task execution tool and library, drawing inspiration -from various sources to arrive at a powerful and clean feature set. It is -evolved from the Fabric project, but focuses on local and abstract concerns -instead of servers and network commands.") + from various sources to arrive at a powerful and clean feature set. It is + evolved from the Fabric project, but focuses on local and abstract concerns + instead of servers and network commands.") (license license:bsd-3))) (define-public python2-invoke - (package-with-python2 python-invoke)) + (let ((parent (package-with-python2 python-invoke))) + (package + (inherit parent) + (arguments + (substitute-keyword-arguments (package-arguments parent) + ((#:phases phases #t) + `(modify-phases ,phases + (delete 'delete-python2-code) + (add-after 'unpack 'delete-python3-code + (lambda _ + (delete-file-recursively "invoke/vendor/yaml3")))))))))) (define-public python-automat (package @@ -18062,19 +17717,24 @@ instead of servers and network commands.") ;; python-twisted depends on python-automat. Twisted is optional, but the ;; tests fail if it is not available. Also see ;; <https://github.com/glyph/automat/issues/71>. - (arguments '(#:tests? #f)) + (arguments + `(#:tests? #f + #:phases + (modify-phases %standard-phases + ;; Remove script, because it depends on python-twisted. + (add-after 'unpack 'remove-entrypoint + (lambda _ + (substitute* "setup.py" + (("\"automat-visualize = automat._visualize:tool\"") ""))))))) (native-inputs - `(("python-m2r" ,python-m2r) - ("python-setuptools-scm" ,python-setuptools-scm) - ("python-graphviz" ,python-graphviz))) + (list python-m2r python-setuptools-scm python-graphviz)) (propagated-inputs - `(("python-six" ,python-six) - ("python-attrs" ,python-attrs))) + (list python-six python-attrs)) (home-page "https://github.com/glyph/Automat") (synopsis "Self-service finite-state machines") (description "Automat is a library for concise, idiomatic Python -expression of finite-state automata (particularly deterministic finite-state -transducers).") + expression of finite-state automata (particularly deterministic finite-state + transducers).") (license license:expat))) (define-public python2-automat @@ -18092,15 +17752,13 @@ transducers).") "16gdm8i06jjmlpvckpfmlkr4693dh0vs192vgsqn84fsdkbbm45z")))) (build-system python-build-system) (propagated-inputs - `(("python-docutils" ,python-docutils) - ("python-mistune" ,python-mistune))) + (list python-docutils python-mistune)) (native-inputs - `(("python-pygments" ,python-pygments) - ("python-mock" ,python-mock))) + (list python-pygments python-mock)) (home-page "https://github.com/miyakogi/m2r") (synopsis "Markdown to reStructuredText converter") (description "M2R converts a markdown file including reST markups to valid -reST format.") + reST format.") (license license:expat))) (define-public python2-m2r @@ -18120,8 +17778,8 @@ reST format.") (home-page "https://github.com/twisted/constantly") (synopsis "Symbolic constants in Python") (description "Constantly is a Python library that provides symbolic -constant support. It includes collections and constants with text, numeric, -and bit flag values.") + constant support. It includes collections and constants with text, numeric, + and bit flag values.") (license license:expat))) (define-public python2-constantly @@ -18139,38 +17797,19 @@ and bit flag values.") "1yzmwi5d197p0qhl7rl4xi9q1w8mk9i3zn6hrl22knbcrb1slspg")))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26)) - #:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append - cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH"))) - (invoke "python" "-m" "pytest")))))))) - (native-inputs - `(("python-coverage" ,python-coverage) - ("python-hypothesis" ,python-hypothesis) - ("python-pympler" ,python-pympler) - ("python-pytest" ,python-pytest) - ("python-six" ,python-six) - ("python-sphinx" ,python-sphinx) - ("python-zope-interface" ,python-zope-interface))) + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest"))))))) + (native-inputs + (list python-coverage python-hypothesis python-pympler python-pytest + python-six)) (home-page "https://github.com/python-attrs/attrs/") (synopsis "Attributes without boilerplate") (description "@code{attrs} is a Python package with class decorators that -ease the chores of implementing the most common attribute-related object -protocols.") + ease the chores of implementing the most common attribute-related object + protocols.") (license license:expat))) (define-public python2-attrs @@ -18180,13 +17819,6 @@ protocols.") (package (inherit python-attrs) (name "python-attrs-bootstrap") - (version "19.3.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "attrs" version)) - (sha256 - (base32 - "0wky4h28n7xnr6xv69p9z6kv8bzn50d10c3drmd9ds8gawbcxdzp")))) (native-inputs `()) (arguments `(#:tests? #f)))) @@ -18212,15 +17844,14 @@ protocols.") ;; fails due to deprecation warnings, etc. #:tests? #f)) (native-inputs - `(("python-coverage-test-runner" ,python-coverage-test-runner) - ("python-pep8" ,python-pep8))) + (list python-coverage-test-runner python-pep8)) (propagated-inputs - `(("python-pyaml" ,python-pyaml))) + (list python-pyaml)) (home-page "https://liw.fi/cliapp/") (synopsis "Python framework for command line programs") (description "@code{cliapp} is a Python framework for command line -programs. It contains the typical stuff such programs need to do, such -as parsing the command line for options, and iterating over input files.") + programs. It contains the typical stuff such programs need to do, such + as parsing the command line for options, and iterating over input files.") (license license:gpl2+))) (define-public python2-cliapp @@ -18242,8 +17873,7 @@ as parsing the command line for options, and iterating over input files.") (file-name (git-file-name name version)))) (build-system python-build-system) (native-inputs - `(("python-coverage-test-runner" ,python-coverage-test-runner) - ("python-pep8" ,python-pep8))) + (list python-coverage-test-runner python-pep8)) (arguments `(#:phases (modify-phases %standard-phases @@ -18255,11 +17885,11 @@ as parsing the command line for options, and iterating over input files.") (lambda _ (invoke "make" "check")))))) (home-page "https://liw.fi/ttystatus/") (synopsis "Python library for showing progress reporting and -status updates on terminals") + status updates on terminals") (description "@code{ttystatus} is a Python library for showing progress -reporting and status updates on terminals, for command line programs. -Output is automatically adapted to the width of the terminal: truncated -if it does not fit, and resized if the terminal size changes.") + reporting and status updates on terminals, for command line programs. + Output is automatically adapted to the width of the terminal: truncated + if it does not fit, and resized if the terminal size changes.") (license license:gpl3+))) (define-public python2-ttystatus @@ -18284,51 +17914,43 @@ if it does not fit, and resized if the terminal size changes.") (home-page "https://liw.fi/tracing/") (synopsis "Python debug logging helper") (description "@code{python2-tracing} is a python library for -logging debug messages. It provides a way to turn debugging messages -on and off, based on the filename they occur in. It is much faster -than using @code{logging.Filter} to accomplish the same thing, which -matters when code is run in production mode. The actual logging still -happens using the @code{logging} library.") + logging debug messages. It provides a way to turn debugging messages + on and off, based on the filename they occur in. It is much faster + than using @code{logging.Filter} to accomplish the same thing, which + matters when code is run in production mode. The actual logging still + happens using the @code{logging} library.") (license license:gpl3+))) (define-public python-astroid (package (name "python-astroid") - (version "2.4.2") + (version "2.6.6") (source (origin - (method url-fetch) - (uri (pypi-uri "astroid" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/PyCQA/astroid") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "00xp5gqxidxvgg1bwd91myqzdf2fpb9cjwbdl3p7gwqvlk17hh1g")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Check to see if the version pinning has been removed. - (substitute* "astroid/__pkginfo__.py" - (("==1\\.4\\.\\*") ">=1.4.0")) - #t)))) + (base32 "1amzf996inwmh4r3mlpzmch60xs6lrg86vppfnwl1y0l8r0y7zxh")))) (build-system python-build-system) (propagated-inputs - `(("python-lazy-object-proxy" ,python-lazy-object-proxy) - ("python-six" ,python-six) - ("python-wrapt" ,python-wrapt))) + (list python-lazy-object-proxy python-wrapt)) (native-inputs - `(("python-dateutil" ,python-dateutil) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-pytest python-pytest-runner)) (home-page "https://github.com/PyCQA/astroid") (synopsis "Common base representation of python source code for pylint and -other projects") + other projects") (description "@code{python-astroid} provides a common base representation -of python source code for projects such as pychecker, pyreverse, pylint, etc. - -It provides a compatible representation which comes from the _ast module. It -rebuilds the tree generated by the builtin _ast module by recursively walking -down the AST and building an extended ast. The new node classes have -additional methods and attributes for different usages. They include some -support for static inference and local name scopes. Furthermore, astroid -builds partial trees by inspecting living objects.") + of python source code for projects such as pychecker, pyreverse, pylint, etc. + + It provides a compatible representation which comes from the _ast module. It + rebuilds the tree generated by the builtin _ast module by recursively walking + down the AST and building an extended ast. The new node classes have + additional methods and attributes for different usages. They include some + support for static inference and local name scopes. Furthermore, astroid + builds partial trees by inspecting living objects.") (license license:lgpl2.1+) (properties `((python2-variant . ,(delay python2-astroid)))))) @@ -18346,26 +17968,26 @@ builds partial trees by inspecting living objects.") (base32 "0fir4b67sm7shcacah9n61pvq313m523jb4q80sycrh3p8nmi6zw")))) (arguments - (substitute-keyword-arguments (package-arguments base) - ((#:phases phases) - `(modify-phases ,phases - (add-after 'unpack 'remove-spurious-test - (lambda _ - ;; https://github.com/PyCQA/astroid/issues/276 - (delete-file "astroid/tests/unittest_brain.py") - #t)) - (replace 'check - (lambda _ - (invoke"python" "-m" "unittest" "discover" - "-p" "unittest*.py"))))))) + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-spurious-test + (lambda _ + ;; https://github.com/PyCQA/astroid/issues/276 + (delete-file "astroid/tests/unittest_brain.py"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "unittest" "discover" + "-p" "unittest*.py"))))))) (native-inputs `()) (propagated-inputs - `(("python2-backports-functools-lru-cache" - ,python2-backports-functools-lru-cache) - ("python2-enum34" ,python2-enum34) - ("python2-singledispatch" ,python2-singledispatch) - ,@(alist-delete "python-typed-ast" - (package-propagated-inputs base))))))) + (list python2-backports-functools-lru-cache + python2-enum34 + python2-lazy-object-proxy + python2-singledispatch + python2-six + python2-wrapt))))) (define-public python-isbnlib (package @@ -18383,36 +18005,90 @@ builds partial trees by inspecting living objects.") (home-page "https://github.com/xlcnd/isbnlib") (synopsis "Python library to work with ISBN strings") (description "@code{python-isbnlib} is a (pure) python library that provides -several useful methods and functions to validate, clean, transform, hyphenate and -get metadata for ISBN strings. Its origin was as the core of isbntools. This short -version, is suitable to be include as a dependency in other projects.") + several useful methods and functions to validate, clean, transform, hyphenate and + get metadata for ISBN strings. Its origin was as the core of isbntools. This short + version, is suitable to be include as a dependency in other projects.") (license license:lgpl3+))) (define-public python-isort (package (name "python-isort") - (version "4.3.4") + (version "5.7.0") (source (origin (method git-fetch) (uri (git-reference - ;; Tests pass only from the Github sources - (url "https://github.com/timothycrosley/isort") - (commit version))) + ;; Tests pass only from the Github sources + (url "https://github.com/timothycrosley/isort") + (commit version))) (file-name (git-file-name name version)) + (modules '((guix build utils))) + (snippet '(for-each delete-file (find-files "." "\\.whl$"))) (sha256 (base32 - "1q0mlrpki5vjbgwxag5rghljjcfg7mvb0pbkwid80p0sqrxlm2p6")))) + "0phq4s911mjjdyr5h5siz93jnpkqb2qgphgcfk6axncgxr8i7vi1")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; A foretaste of what our future python-build-system will need to + ;; do. + (replace 'build + (lambda _ + (invoke "python" "-m" "build" "--wheel" "--no-isolation" "."))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (whl (car (find-files "dist" "\\.whl$")))) + (invoke "pip" "--no-cache-dir" "--no-input" + "install" "--no-deps" "--prefix" out whl)))) + (add-after 'install 'install-example-plugins + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + ;; Patch to use the core poetry API. + (substitute* '("example_isort_formatting_plugin/pyproject.toml" + "example_shared_isort_profile/pyproject.toml") + (("poetry>=0.12") + "poetry-core>=1.0.0") + (("poetry.masonry.api") + "poetry.core.masonry.api")) + ;; Build the example plugins. + (for-each (lambda (source-directory) + (invoke "python" "-m" "build" "--wheel" + "--no-isolation" "--outdir=dist" + source-directory)) + '("example_isort_formatting_plugin" + "example_shared_isort_profile")) + ;; Install them to temporary storage, for the test. + (setenv "HOME" (getcwd)) + (let ((example-whls (find-files "dist" "^example.*\\.whl$"))) + (apply invoke "pip" "--no-cache-dir" "--no-input" + "install" "--user" "--no-deps" example-whls))))) + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (setenv "PATH" (string-append (getenv "PATH") ":" bin))) + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv" "tests/unit/" + "--ignore=tests/unit/test_deprecated_finders.py"))))))) (native-inputs - `(("python-mock" ,python-mock) + `(("git" ,git-minimal) + ("python-black" ,python-black) + ("python-colorama" ,python-colorama) + ("python-hypothesmith" ,python-hypothesmith) + ("python-libcst" ,python-libcst-minimal) + ("python-poetry-core" ,python-poetry-core) + ("python-pylama" ,python-pylama) + ("python-pypa-build" ,python-pypa-build) + ("python-pytest-mock" ,python-pytest-mock) ("python-pytest" ,python-pytest))) - (home-page "https://github.com/timothycrosley/isort") + (home-page "https://github.com/PyCQA/isort") (synopsis "Python utility/library to sort python imports") (description "@code{python-isort} is a python utility/library to sort -imports alphabetically, and automatically separated into sections. It -provides a command line utility, a python library and plugins for various -editors.") + imports alphabetically, and automatically separated into sections. It + provides a command line utility, a python library and plugins for various + editors.") (license license:expat) (properties `((python2-variant . ,(delay python2-isort)))))) @@ -18438,13 +18114,13 @@ editors.") "0jidrkk2w6bhjm197plxiaxrav64mgcrign0bfyr7md2ilc5zplg")))) (build-system python-build-system) (native-inputs - `(("python2-setuptools-scm" ,python2-setuptools-scm))) + (list python2-setuptools-scm)) (arguments `(#:python ,python-2)) (home-page "https://github.com/jaraco/backports.functools_lru_cache") (synopsis "Backport of functools.lru_cache from Python 3.3") (description "@code{python2-backports-functools-lru-cache} is a backport -of @code{functools.lru_cache} from python 3.3.") + of @code{functools.lru_cache} from python 3.3.") (license license:expat))) (define-public python-configparser @@ -18459,13 +18135,13 @@ of @code{functools.lru_cache} from python 3.3.") (base32 "1priacxym85yjcf68hh38w55nqswaxp71ryjyfdk222kg9l85ln7")))) (native-inputs - `(("python-setuptools_scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) (build-system python-build-system) (home-page "https://github.com/jaraco/configparser/") (synopsis "Backport of configparser from python 3.5") (description "@code{python-configparser} is a backport of -@code{configparser} from Python 3.5 so that it can be used directly -in other versions.") + @code{configparser} from Python 3.5 so that it can be used directly + in other versions.") (license license:expat))) (define-public python2-configparser @@ -18486,14 +18162,14 @@ in other versions.") (home-page "https://github.com/RonnyPfannschmidt/iniconfig") (synopsis "Simple INI-file parser") (description "The @code{iniconfig} package provides a small and simple -INI-file parser module having a unique set of features; @code{iniconfig} -@itemize -@item maintains the order of sections and entries; -@item supports multi-line values with or without line-continuations; -@item supports \"#\" comments everywhere; -@item raises errors with proper line-numbers; -@item raises an error when two sections have the same name. -@end itemize") + INI-file parser module having a unique set of features ; @code{iniconfig} + @itemize + @item maintains the order of sections and entries ; + @item supports multi-line values with or without line-continuations ; + @item supports \"#\" comments everywhere ; + @item raises errors with proper line-numbers ; + @item raises an error when two sections have the same name. + @end itemize") (license license:expat))) (define-public python-mamba @@ -18509,13 +18185,12 @@ INI-file parser module having a unique set of features; @code{iniconfig} (build-system python-build-system) (arguments `(#:tests? #f)) ; No test (propagated-inputs - `(("python-clint" ,python-clint) - ("python-coverage" ,python-coverage))) + (list python-clint python-coverage)) (home-page "https://nestorsalceda.com/mamba/") (synopsis "Test runner for Python") (description "Mamba is a Behaviour-Driven Development tool for Python developers. -Is heavily influenced from RSpec, Mocha, Jasmine or Ginkgo.") + Is heavily influenced from RSpec, Mocha, Jasmine or Ginkgo.") (license license:expat))) (define-public python-mando @@ -18530,16 +18205,15 @@ Is heavily influenced from RSpec, Mocha, Jasmine or Ginkgo.") "0q6rl085q1hw1wic52pqfndr0x3nirbxnhqj9akdm5zhq2fv3zkr")))) (build-system python-build-system) (propagated-inputs - `(("python-rst2ansi" ,python-rst2ansi) - ("python-six" ,python-six))) + (list python-rst2ansi python-six)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://mando.readthedocs.org/") (synopsis "Wrapper around argparse, allowing creation of complete CLI applications") (description "This package is a wrapper around argparse, allowing you to write complete CLI -applications in seconds while maintaining all the flexibility.") + applications in seconds while maintaining all the flexibility.") (license license:expat))) (define-public python2-mando @@ -18563,7 +18237,7 @@ applications in seconds while maintaining all the flexibility.") (synopsis "Python command-line parsing library") (description "This package is mostly for people who want to have @code{argparse} on -older Pythons because it was not part of the standard library back then.") + older Pythons because it was not part of the standard library back then.") (license license:psfl))) (define-public python-mwclient @@ -18582,14 +18256,10 @@ older Pythons because it was not part of the standard library back then.") (base32 "120snnsh9n5svfwkyj1w9jrxf99jnqm0jk282yypd3lpyca1l9hj")))) (build-system python-build-system) (propagated-inputs - `(("python-requests-oauthlib" ,python-requests-oauthlib) - ("python-six" ,python-six))) + (list python-requests-oauthlib python-six)) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-runner" ,python-pytest-runner) - ("python-responses" ,python-responses))) + (list python-mock python-pytest python-pytest-cov + python-pytest-runner python-responses)) (home-page "https://github.com/btongminh/mwclient") (synopsis "MediaWiki API client") (description "This package provides a MediaWiki API client.") @@ -18622,7 +18292,7 @@ older Pythons because it was not part of the standard library back then.") (synopsis "Convenient utilities not included with the standard Python install") (description "Python Utils is a collection of small Python functions and classes which -make common patterns shorter and easier.") + make common patterns shorter and easier.") (license license:bsd-2))) (define-public python-diff-match-patch @@ -18640,7 +18310,7 @@ make common patterns shorter and easier.") (home-page "https://code.google.com/p/google-diff-match-patch") (synopsis "Synchronize plain text") (description "Diff Match and Patch libraries offer robust algorithms to -perform the operations required for synchronizing plain text.") + perform the operations required for synchronizing plain text.") (license license:asl2.0))) (define-public python2-diff-match-patch @@ -18659,7 +18329,7 @@ perform the operations required for synchronizing plain text.") "1gm82jddm1lkazdi8lfsl1b3vi1z0252ng60mzjym8irnv94qfhy")))) (build-system python-build-system) (propagated-inputs - `(("six" ,python-six))) + (list python-six)) (home-page "https://github.com/tkhyn/dirsync") (synopsis "Advanced directory tree synchronisation tool") (description "Advanced directory tree synchronisation tool.") @@ -18684,13 +18354,13 @@ perform the operations required for synchronizing plain text.") (synopsis "Fast computation of Levenshtein distance and string similarity") (description "The Levenshtein Python C extension module contains functions for fast computation of -@enumerate -@item Levenshtein (edit) distance, and edit operations -@item string similarity -@item approximate median strings, and generally string averaging -@item string sequence and set similarity -@end enumerate -It supports both normal and Unicode strings.") + @enumerate + @item Levenshtein (edit) distance, and edit operations + @item string similarity + @item approximate median strings, and generally string averaging + @item string sequence and set similarity + @end enumerate + It supports both normal and Unicode strings.") (license license:gpl2+))) (define-public python2-levenshtein @@ -18716,12 +18386,12 @@ It supports both normal and Unicode strings.") (synopsis "Directory iteration function") (description "Directory iteration function like os.listdir(), except that instead of -returning a list of bare filenames, it yields DirEntry objects that include -file type and stat information along with the name. Using scandir() increases -the speed of os.walk() by 2-20 times (depending on the platform and file -system) by avoiding unnecessary calls to os.stat() in most cases. + returning a list of bare filenames, it yields DirEntry objects that include + file type and stat information along with the name. Using scandir() increases + the speed of os.walk() by 2-20 times (depending on the platform and file + system) by avoiding unnecessary calls to os.stat() in most cases. -This package is part of the Python standard library since version 3.5.") + This package is part of the Python standard library since version 3.5.") (license license:bsd-3))) (define-public python2-scandir @@ -18744,10 +18414,10 @@ This package is part of the Python standard library since version 3.5.") (synopsis "Python implementations of various stemming algorithms") (description "Python implementations of the Porter, Porter2, Paice-Husk, and Lovins -stemming algorithms for English. These implementations are straightforward and -efficient, unlike some Python versions of the same algorithms available on the -Web. This package is an extraction of the stemming code included in the Whoosh -search engine.") + stemming algorithms for English. These implementations are straightforward and + efficient, unlike some Python versions of the same algorithms available on the + Web. This package is an extraction of the stemming code included in the Whoosh + search engine.") (license license:public-domain))) (define-public python-factory-boy @@ -18771,17 +18441,14 @@ search engine.") (description "Factory_boy is a fixtures replacement based on thoughtbot’s factory_girl. -As a fixtures replacement tool, it aims to replace static, hard to maintain -fixtures with easy-to-use factories for complex object. + As a fixtures replacement tool, it aims to replace static, hard to maintain + fixtures with easy-to-use factories for complex object. -Instead of building an exhaustive test setup with every possible combination -of corner cases, factory_boy allows you to use objects customized for the -current test, while only declaring the test-specific fields") + Instead of building an exhaustive test setup with every possible combination + of corner cases, factory_boy allows you to use objects customized for the + current test, while only declaring the test-specific fields") (license license:expat))) -(define-public python2-factory-boy - (package-with-python2 python-factory-boy)) - (define-public python-translate-toolkit (package (name "python-translate-toolkit") @@ -18794,18 +18461,17 @@ current test, while only declaring the test-specific fields") (base32 "020pp7pbpnavxd41z90vyzzx06ci57mx9drkgbsb89wxxx4gal9v")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-sphinx" ,python-sphinx))) - (propagated-inputs - `(("python-babel" ,python-babel) - ("python-beautifulsoup4" ,python-beautifulsoup4) - ("python-chardet" ,python-chardet) - ("python-diff-match-patch" ,python-diff-match-patch) - ("python-levenshtein" ,python-levenshtein) - ("python-lxml" ,python-lxml) - ("python-six" ,python-six) - ("python-vobject" ,python-vobject) - ("python-pyyaml" ,python-pyyaml))) + (list python-pytest python-sphinx)) + (propagated-inputs + (list python-babel + python-beautifulsoup4 + python-chardet + python-diff-match-patch + python-levenshtein + python-lxml + python-six + python-vobject + python-pyyaml)) (arguments ;; TODO: tests are not run, because they end with ;; TypeError: parse() missing 2 required positional arguments: 'tree' and @@ -18816,7 +18482,7 @@ current test, while only declaring the test-specific fields") (synopsis "Tools and API for translation and localization engineering") (description "Tools and API for translation and localization engineering. It contains -several utilities, as well as an API for building localization tools.") + several utilities, as well as an API for building localization tools.") (license license:gpl2+))) ;; Required for virtaal, newer versions do not build with python2 @@ -18833,28 +18499,15 @@ several utilities, as well as an API for building localization tools.") (base32 "1vlkwrg83vb17jc36pmwh2b7jphwf390lz0jw8hakcg16qhwypvq"))))))) (define-public python-packaging - (package + (package/inherit python-packaging-bootstrap (name "python-packaging") - (version "20.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "packaging" version)) - ;; XXX: The URL in the patch file is wrong, it should be - ;; <https://github.com/pypa/packaging/pull/256>. - (patches (search-patches "python-packaging-test-arch.patch")) - (sha256 - (base32 - "1y2ip3a4ykkpgnwgn85j6hkspcl0cg3mzms97f40mk57vwqq67gy")))) - (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (replace 'check (lambda* (#:key tests? #:allow-other-keys) (if tests? - (invoke "py.test" "-vv") - (format #t "test suite not run~%")) - #t))))) + (invoke "pytest" "-vv") + (format #t "test suite not run~%"))))))) (native-inputs `(("python-pretend" ,python-pretend) ("python-pytest" ,python-pytest))) @@ -18864,8 +18517,8 @@ several utilities, as well as an API for building localization tools.") (home-page "https://github.com/pypa/packaging") (synopsis "Core utilities for Python packages") (description "Packaging is a Python module for dealing with Python packages. -It offers an interface for working with package versions, names, and dependency -information.") + It offers an interface for working with package versions, names, and dependency + information.") ;; From 'LICENSE': This software is made available under the terms of ;; *either* of the licenses found in LICENSE.APACHE or LICENSE.BSD. ;; Contributions to this software is made under the terms of *both* these @@ -18875,29 +18528,6 @@ information.") (define-public python2-packaging (package-with-python2 python-packaging)) -;; Variants with minimal dependencies, for bootstrapping Pytest. -(define-public python-packaging-bootstrap - (hidden-package - (package/inherit - python-packaging - (name "python-packaging-bootstrap") - (native-inputs '()) - (propagated-inputs - `(("python-pyparsing" ,python-pyparsing))) - (arguments '(#:tests? #f))))) - -(define-public python2-packaging-bootstrap - (hidden-package - (package/inherit - python2-packaging - (name "python2-packaging-bootstrap") - (native-inputs '()) - (propagated-inputs - `(("python-pyparsing" ,python2-pyparsing))) - (arguments - `(#:tests? #f - ,@(package-arguments python2-packaging)))))) - (define-public python-relatorio (package (name "python-relatorio") @@ -18911,20 +18541,16 @@ information.") "09nhrz80dfm60nssbvjgz4czzy4yzfa8gxczcdlzbgcnnvm914vb")))) (build-system python-build-system) (propagated-inputs - `(("python-lxml" ,python-lxml) - ("python-genshi" ,python-genshi))) + (list python-lxml python-genshi)) (native-inputs - `(("python-magic" ,python-magic))) + (list python-magic)) (home-page "https://relatorio.tryton.org/") (synopsis "Templating library able to output ODT and PDF files") (description "Relatorio is a templating library which provides a way to -easily output ODT, ODS, PNG, SVG and several other kinds of files. Support -for more filetypes can be easily added by creating plugins for them.") + easily output ODT, ODS, PNG, SVG and several other kinds of files. Support + for more filetypes can be easily added by creating plugins for them.") (license license:gpl3+))) -(define-public python2-relatorio - (package-with-python2 python-relatorio)) - (define-public python-radon (package (name "python-radon") @@ -18939,26 +18565,30 @@ for more filetypes can be easily added by creating plugins for them.") (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + ((".*'future'.*") + "") + (("colorama==0.4.1") + "colorama>=0.4.1")))) (replace 'check (lambda _ (invoke "python" "radon/tests/run.py")))))) (propagated-inputs - `(("python-colorama" ,python-colorama) - ("python-flake8-polyfill" ,python-flake8-polyfill) - ("python-mando" ,python-mando))) + (list python-colorama python-flake8-polyfill python-mando)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-mock" ,python-pytest-mock))) + (list python-pytest python-pytest-mock)) (home-page "https://radon.readthedocs.org/") (synopsis "Code Metrics in Python") (description "Radon is a Python tool which computes various code metrics. -Supported metrics are: -@itemize @bullet -@item raw metrics: SLOC, comment lines, blank lines, &c. -@item Cyclomatic Complexity (i.e. McCabe’s Complexity) -@item Halstead metrics (all of them) -@item the Maintainability Index (a Visual Studio metric) -@end itemize") + Supported metrics are: + @itemize @bullet + @item raw metrics: SLOC, comment lines, blank lines, &c. + @item Cyclomatic Complexity (i.e. McCabe’s Complexity) + @item Halstead metrics (all of them) + @item the Maintainability Index (a Visual Studio metric) + @end itemize") (properties `((python2-variant . ,(delay python2-radon)))) (license license:expat))) @@ -18983,15 +18613,14 @@ Supported metrics are: "1and0drq8w9iplsic22n2h7hkpyq03a1mbqk4sgcdqhqzdqm539w")))) (build-system python-build-system) (propagated-inputs - `(("python-mock" ,python-mock) - ("python-six" ,python-six))) + (list python-mock python-six)) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/gabrielfalcao/sure") (synopsis "Automated testing library in python for python") (description "Sure is a python library that leverages a DSL for writing assertions. -Sure is heavily inspired by @code{RSpec Expectations} and @code{should.js}.") + Sure is heavily inspired by @code{RSpec Expectations} and @code{should.js}.") (license license:gpl3+))) (define-public python2-sure @@ -19018,7 +18647,7 @@ Sure is heavily inspired by @code{RSpec Expectations} and @code{should.js}.") "ANSI terminal tool for python, colored shell and other handy fancy features") (description "@code{Couleur} provides python programs a way to use the ANSI features in a unix -terminal such as coloured output in the shell, overwriting output, indentation, etc.") + terminal such as coloured output in the shell, overwriting output, indentation, etc.") ;; README.md says ASL2.0, but all source code headers are LGPL3+. ;; https://github.com/gabrielfalcao/couleur/issues/11 (license license:lgpl3+))) @@ -19043,13 +18672,13 @@ terminal such as coloured output in the shell, overwriting output, indentation, ;; for which it does not have the permission to write. #:tests? #f)) (propagated-inputs - `(("python-cffi" ,python-cffi))) + (list python-cffi)) (home-page "https://github.com/FSX/misaka") (synopsis "Python binding for Hoedown") (description "@code{Misaka} is a CFFI-based binding for @code{Hoedown}, a fast markdown processing -library written in C. It features a fast HTML renderer and functionality to make custom -renderers (e.g. man pages or LaTeX).") + library written in C. It features a fast HTML renderer and functionality to make custom + renderers (e.g. man pages or LaTeX).") (license license:expat))) (define-public python2-misaka @@ -19071,9 +18700,7 @@ renderers (e.g. man pages or LaTeX).") "1640i9g8dycql3cc8j0bky0jkzj0q39blfbp4lsgpkprkfgcdk8v")))) (build-system python-build-system) (native-inputs - `(("python-couleur" ,python2-couleur) - ("python-sure" ,python2-sure) - ("python-misaka" ,python2-misaka))) + (list python2-couleur python2-sure python2-misaka)) (arguments `(#:python ,python-2 #:phases @@ -19089,9 +18716,9 @@ renderers (e.g. man pages or LaTeX).") (synopsis "Markdown-based test runner for python") (description "@code{Steadymark} allows documentation to be written in github-flavoured -markdown. The documentation may contain snippets of code surrounded by python -code blocks and @code{Steadymark} will find these snippets and run them, making -sure that there are no old malfunctional examples in the documentation examples.") + markdown. The documentation may contain snippets of code surrounded by python + code blocks and @code{Steadymark} will find these snippets and run them, making + sure that there are no old malfunctional examples in the documentation examples.") (license license:expat))) (define-public python-jsonpointer @@ -19109,7 +18736,7 @@ sure that there are no old malfunctional examples in the documentation examples. (home-page "https://github.com/stefankoegl/python-json-pointer") (synopsis "Identify specific nodes in a JSON document") (description "@code{jsonpointer} allows you to access specific nodes -by path in a JSON document (see RFC 6901).") + by path in a JSON document (see RFC 6901).") (license license:bsd-3))) (define-public python2-jsonpointer @@ -19132,11 +18759,11 @@ by path in a JSON document (see RFC 6901).") "0k9pff06lxama3nhsc7cdxbp83422bdy8ifs52i6xkas8hpyzfzr")))) (build-system python-build-system) (propagated-inputs - `(("python-jsonpointer" ,python-jsonpointer))) + (list python-jsonpointer)) (home-page "https://github.com/stefankoegl/python-json-patch") (synopsis "Applying JSON Patches in Python 2.6+ and 3.x") (description "@code{jsonpatch} is a library and program that allows -applying JSON Patches according to RFC 6902.") + applying JSON Patches according to RFC 6902.") (license license:bsd-3))) (define-public python2-jsonpatch @@ -19172,31 +18799,19 @@ applying JSON Patches according to RFC 6902.") "17dvx15m3r49bmif5zlli8kzjd6bys6psixzbp14sd5367d9h8qi")))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26)) - #:phases + `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-v"))))))) - (native-inputs - `(("python-pytest" ,python-pytest))) + (invoke "pytest" "-v")))))) + (native-inputs + (list python-pytest)) (home-page "https://rfc3986.readthedocs.io/") (synopsis "Parse and validate URI references") (description "@code{rfc3986} is a Python implementation of RFC@tie{}3986 including -validation and authority parsing. This module also supports RFC@tie{}6874 -which adds support for zone identifiers to IPv6 addresses.") + validation and authority parsing. This module also supports RFC@tie{}6874 + which adds support for zone identifiers to IPv6 addresses.") (license license:asl2.0))) (define-public python2-rfc3986 @@ -19217,7 +18832,7 @@ which adds support for zone identifiers to IPv6 addresses.") (home-page "https://pypi.org/project/rfc3987/") (synopsis "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)") (description "@code{rfc3987} provides routines for parsing and -validation of URIs (see RFC 3986) and IRIs (see RFC 3987).") + validation of URIs (see RFC 3986) and IRIs (see RFC 3987).") (license license:gpl3+))) (define-public python2-rfc3987 @@ -19250,13 +18865,13 @@ validation of URIs (see RFC 3986) and IRIs (see RFC 3987).") (invoke "pytest" "tests/test_ipv6.py") #t)))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://pypi.org/project/rfc6555/") (synopsis "Python implementation of RFC 6555") (description "Python implementation of the Happy Eyeballs Algorithm described in RFC -6555. Provided with a single file and dead-simple API to allow easy vendoring -and integration into other projects.") + 6555. Provided with a single file and dead-simple API to allow easy vendoring + and integration into other projects.") (license license:asl2.0)))) (define-public python-bagit @@ -19272,14 +18887,12 @@ and integration into other projects.") "1m6y04qmig0b5hzb35lnaw3d2yfydb7alyr1579yblvgs3da6j7j")))) (build-system python-build-system) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm) - ("python-coverage" ,python-coverage) - ("python-mock" ,python-mock))) + (list python-setuptools-scm python-coverage python-mock)) (home-page "https://libraryofcongress.github.io/bagit-python/") (synopsis "Create and validate BagIt packages") (description "Bagit is a Python library and command line utility for working -with BagIt style packages. BagIt is a minimalist packaging format for digital -preservation.") + with BagIt style packages. BagIt is a minimalist packaging format for digital + preservation.") (license license:cc0))) (define-public python-prov @@ -19295,19 +18908,15 @@ preservation.") "1vi2fj31vygfcqrkimdmk52q2ldw08g9fn4v4zlgdfgcjlhqyhxn")))) (build-system python-build-system) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-lxml" ,python-lxml) - ("python-networkx" ,python-networkx) - ("python-rdflib" ,python-rdflib))) + (list python-dateutil python-lxml python-networkx python-rdflib)) (native-inputs - `(("graphviz" ,graphviz) - ("python-pydot" ,python-pydot))) + (list graphviz python-pydot)) (home-page "https://github.com/trungdong/prov") (synopsis "W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)") (description "This package provides a library for W3C Provenance Data Model supporting -PROV-O (RDF), PROV-XML, PROV-JSON import/export.") + PROV-O (RDF), PROV-XML, PROV-JSON import/export.") (license license:expat))) (define-public python-arcp @@ -19323,23 +18932,23 @@ PROV-O (RDF), PROV-XML, PROV-JSON import/export.") "1p8mfyjssa6pbn5dp6pyzv9yy6kwm2rz5jn2kjbq5vy9f9wsq5sw")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "http://arcp.readthedocs.io/") (synopsis "Archive and Package URI parser and generator") (description "@acronym{arcp, Archive and Package} provides functions for creating -@code{arcp_} URIs, which can be used for identifying or parsing hypermedia files -packaged in an archive or package, like a ZIP file. arcp URIs can be used to -consume or reference hypermedia resources bundled inside a file archive or an -application package, as well as to resolve URIs for archive resources within a -programmatic framework. This URI scheme provides mechanisms to generate a -unique base URI to represent the root of the archive, so that relative URI -references in a bundled resource can be resolved within the archive without -having to extract the archive content on the local file system. An arcp URI can -be used for purposes of isolation (e.g. when consuming multiple archives), -security constraints (avoiding \"climb out\" from the archive), or for -externally identiyfing sub-resources referenced by hypermedia formats.") + @code{arcp_} URIs, which can be used for identifying or parsing hypermedia files + packaged in an archive or package, like a ZIP file. arcp URIs can be used to + consume or reference hypermedia resources bundled inside a file archive or an + application package, as well as to resolve URIs for archive resources within a + programmatic framework. This URI scheme provides mechanisms to generate a + unique base URI to represent the root of the archive, so that relative URI + references in a bundled resource can be resolved within the archive without + having to extract the archive content on the local file system. An arcp URI can + be used for purposes of isolation (e.g. when consuming multiple archives), + security constraints (avoiding \"climb out\" from the archive), or for + externally identiyfing sub-resources referenced by hypermedia formats.") (license license:asl2.0))) (define-public python-shellescape @@ -19367,15 +18976,15 @@ externally identiyfing sub-resources referenced by hypermedia formats.") (invoke "python" "tests/test_shellescape.py")) #t))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/chrissimpkins/shellescape") (synopsis "Shell escape a string to safely use it as a token in a shell command") (description "The shellescape Python module defines the @code{shellescape.quote()} -function that returns a shell-escaped version of a Python string. This is a -backport of the @code{shlex.quote()} function from Python 3.8 that makes it -accessible to users of Python 3 versions < 3.3 and all Python 2.x versions.") + function that returns a shell-escaped version of a Python string. This is a + backport of the @code{shlex.quote()} function from Python 3.8 that makes it + accessible to users of Python 3 versions < 3.3 and all Python 2.x versions.") (license license:expat))) (define-public python-validators @@ -19395,24 +19004,18 @@ accessible to users of Python 3 versions < 3.3 and all Python 2.x versions.") (lambda _ (invoke "pytest" "-vv")))))) (propagated-inputs - `(("python-decorator" ,python-decorator) - ("python-six" ,python-six))) + (list python-decorator python-six)) (native-inputs - `(("python-flake8" ,python-flake8) - ("python-isort" ,python-isort) - ("python-pytest" ,python-pytest))) + (list python-flake8 python-isort python-pytest)) (home-page "https://github.com/kvesteri/validators") (synopsis "Data validation library") (description "This package contains validators for different things such as email -addresses, IP addresses, URLs, hashes and more. It has been designed to -be easy to use and not require defining a schema or form just to validate -some input.") + addresses, IP addresses, URLs, hashes and more. It has been designed to + be easy to use and not require defining a schema or form just to validate + some input.") (license license:expat))) -(define-public python2-validators - (package-with-python2 python-validators)) - (define-public python-validate-email (package (name "python-validate-email") @@ -19428,7 +19031,7 @@ some input.") (home-page "https://github.com/syrusakbary/validate_email") (synopsis "Verifies if an email address is valid and really exists") (description "@code{validate_email} can be used to verify if an email -address is valid and really exists.") + address is valid and really exists.") (license license:lgpl3+))) (define-public python2-validate-email @@ -19447,14 +19050,14 @@ address is valid and really exists.") "00pamnwla3khk8nyla7y28dq9jnh69swd7f4jfsl7sn1izs8n8zk")))) (build-system python-build-system) (propagated-inputs - `(("python-click" ,python-click) - ("python-iso8601" ,python-iso8601) - ("python-jsonpointer" ,python-jsonpointer) - ("python-pyyaml" ,python-pyyaml) - ("python-requests" ,python-requests) - ("python-rfc3987" ,python-rfc3987) - ("python-six" ,python-six) - ("python-validate-email" ,python-validate-email))) + (list python-click + python-iso8601 + python-jsonpointer + python-pyyaml + python-requests + python-rfc3987 + python-six + python-validate-email)) (home-page "https://github.com/pipermerriam/flex") (synopsis "Validates Swagger schemata") (description "@code{flex} can be used to validate Swagger schemata.") @@ -19476,16 +19079,14 @@ address is valid and really exists.") "0kizhh3mnhpa08wfnsv1gagy22bpxzxszgbiylkhpz1d8qvwrykk")))) (build-system python-build-system) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-simplejson" ,python-simplejson))) + (list python-dateutil python-simplejson)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytz" ,python-pytz))) + (list python-pytest python-pytz)) (home-page "https://github.com/marshmallow-code/marshmallow") (synopsis "Convert complex datatypes to and from native -Python datatypes") + Python datatypes") (description "@code{marshmallow} provides a library for converting -complex datatypes to and from native Python datatypes.") + complex datatypes to and from native Python datatypes.") (license license:expat))) (define-public python-marshmallow-3.2 @@ -19511,22 +19112,22 @@ complex datatypes to and from native Python datatypes.") (base32 "1d9pxcgmln4gls99vwj1h24qv0lz7fb2jqmqrsiv1pid1snc125x")))) (build-system python-build-system) (propagated-inputs - `(("python-marshmallow" ,python-marshmallow-3.2))) + (list python-marshmallow-3.2)) (native-inputs - `(("python-faker" ,python-faker) - ("python-flake8" ,python-flake8) - ("python-flake8-bugbear" ,python-flake8-bugbear) - ("python-flask" ,python-flask) - ("python-mock" ,python-mock) - ("python-pre-commit" ,python-pre-commit) - ("python-pytest" ,python-pytest) - ("python-tox" ,python-tox))) + (list python-faker + python-flake8 + python-flake8-bugbear + python-flask + python-mock + python-pre-commit + python-pytest + python-tox)) (home-page "https://github.com/marshmallow-code/marshmallow-jsonapi") (synopsis "JSON:API 1.0 formatting with Marshmallow") (description "The marshmallow-jsonapi package provides a simple way to produce -@uref{https://jsonapi.org, JSON:API}-compliant data in any Python Web framework. -It includes optional utilities to integrate with Flask.") + @uref{https://jsonapi.org, JSON:API}-compliant data in any Python Web framework. + It includes optional utilities to integrate with Flask.") (license license:expat))) (define-public python-apispec @@ -19543,29 +19144,22 @@ It includes optional utilities to integrate with Flask.") (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases - (add-after 'unpack 'disable-prance-tests - (lambda _ - ;; Disable validation tests since they require the - ;; optional 'prance' library which is not yet in Guix. - (substitute* "tests/test_ext_marshmallow_openapi.py" - (("def test_openapi_tools_validate.*" all) - (string-append "@pytest.mark.xfail\n" all))))) (replace 'check (lambda _ - (setenv "PYTHONPATH" - (string-append "./build/lib:" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-vv")))))) + (invoke "pytest" "-vv" + ;; Disable validation tests since they require + ;; the optional 'prance' library which is not + ;; yet in Guix. + "-k" "not openapi_tools_validate")))))) (propagated-inputs - `(("python-pyyaml" ,python-pyyaml))) + (list python-pyyaml)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-marshmallow" ,python-marshmallow))) + (list python-pytest python-marshmallow)) (home-page "https://github.com/marshmallow-code/apispec") (synopsis "Swagger/OpenAPI specification generator") (description "@code{python-apispec} is a pluggable API specification -generator. It currently supports the OpenAPI specification, formerly known -as Swagger.") + generator. It currently supports the OpenAPI specification, formerly known + as Swagger.") (license license:expat))) (define-public python-flasgger @@ -19590,29 +19184,23 @@ as Swagger.") (substitute* "Makefile" (("flake8 flasgger --ignore=F403") "flake8 flasgger --ignore=E731,F403")) - (setenv "PYTHONPATH" (string-append (getcwd) - ":" - (getenv "PYTHONPATH"))) (invoke "py.test")))))) (propagated-inputs - `(("python-flask" ,python-flask) - ("python-pyyaml" ,python-pyyaml) - ("python-jsonschema" ,python-jsonschema) - ("python-mistune" ,python-mistune) - ("python-six" ,python-six))) - (native-inputs - `(("python-decorator" ,python-decorator) - ("python-flake8" ,python-flake8) - ("python-flask-restful" ,python-flask-restful) - ("python-flex" ,python-flex) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-marshmallow" ,python-marshmallow) - ("python-apispec" ,python-apispec))) + (list python-flask python-pyyaml python-jsonschema python-mistune + python-six)) + (native-inputs + (list python-decorator + python-flake8 + python-flask-restful + python-flex + python-pytest + python-pytest-cov + python-marshmallow + python-apispec)) (home-page "https://github.com/rochacbruno/flasgger/") (synopsis "Extract Swagger specs from your Flask project") (description "@code{python-flasgger} allows extracting Swagger specs -from your Flask project. It is a fork of Flask-Swagger.") + from your Flask project. It is a fork of Flask-Swagger.") (license license:expat))) (define-public python-swagger-spec-validator @@ -19628,14 +19216,12 @@ from your Flask project. It is a fork of Flask-Swagger.") "11g627icrsqwazsncwi0sdvprcj6hwaayw5xk3xsj8d97bmrzqjp")))) (build-system python-build-system) (propagated-inputs - `(("python-jsonschema" ,python-jsonschema) - ("python-pyyaml" ,python-pyyaml) - ("python-six" ,python-six))) + (list python-jsonschema python-pyyaml python-six)) (home-page "https://github.com/Yelp/swagger_spec_validator") (synopsis "Validation of Swagger specifications") (description "@code{swagger_spec_validator} provides a library for -validating Swagger API specifications.") + validating Swagger API specifications.") (license license:asl2.0))) (define-public python-apache-libcloud @@ -19664,7 +19250,7 @@ validating Swagger API specifications.") (substitute* "libcloud/test/compute/test_ssh_client.py" (("class ShellOutSSHClientTests") "@unittest.skip(\"Guix container doesn't have ssh service\") -class ShellOutSSHClientTests")) + class ShellOutSSHClientTests")) #t)) (add-before 'check 'copy-secret (lambda _ @@ -19672,20 +19258,16 @@ class ShellOutSSHClientTests")) "libcloud/test/secrets.py") #t))))) (inputs - `(("openssh" ,openssh))) + (list openssh)) (propagated-inputs - `(("python-paramiko" ,python-paramiko) - ("python-requests" ,python-requests))) + (list python-paramiko python-requests)) (native-inputs - `(("python-lockfile" ,python-lockfile) - ("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner) - ("python-requests-mock" ,python-requests-mock))) + (list python-lockfile python-mock python-pytest python-pytest-runner + python-requests-mock)) (home-page "https://libcloud.apache.org/") (synopsis "Unified Cloud API") (description "@code{libcloud} is a Python library for interacting with -many of the popular cloud service providers using a unified API.") + many of the popular cloud service providers using a unified API.") (license license:asl2.0))) (define-public python-smmap @@ -19700,11 +19282,11 @@ many of the popular cloud service providers using a unified API.") (base32 "0ijlnv60y8f41py1wnn5n1a1i81cxd9dfpdhr0k3cgkrcbz8850p")))) (build-system python-build-system) (native-inputs - `(("python-nosexcover" ,python-nosexcover))) + (list python-nosexcover)) (home-page "https://github.com/Byron/smmap") (synopsis "Python sliding window memory map manager") (description "@code{smmap} is a pure Python implementation of a sliding -window memory map manager.") + window memory map manager.") (license license:bsd-3))) (define-public python2-smmap @@ -19728,13 +19310,13 @@ window memory map manager.") (lambda* (#:key inputs outputs #:allow-other-keys) (add-installed-pythonpath inputs outputs) (invoke "python" "-c" - "from regex.test_regex import test_main; test_main()")))))) - (home-page "https://bitbucket.org/mrabarnett/mrab-regex") - (synopsis "Alternative regular expression module") - (description "This regular expression implementation is backwards- + "from regex.test_regex import test_main ; test_main()")))))) + (home-page "https://bitbucket.org/mrabarnett/mrab-regex") + (synopsis "Alternative regular expression module") + (description "This regular expression implementation is backwards- compatible with the standard @code{re} module, but offers additional functionality like full case-folding for case-insensitive matches in Unicode.") - (license license:psfl))) + (license license:psfl))) (define-public python2-regex (package-with-python2 python-regex)) @@ -19752,9 +19334,7 @@ functionality like full case-folding for case-insensitive matches in Unicode.") "091lp9bpqi8yf1nmyg19xmvw611lrzq2q94cl1k5gnlh0c6vl1s1")))) (build-system python-build-system) (inputs - `(("mesa" ,mesa) - ("freeglut" ,freeglut) - ("glu" ,glu))) + (list mesa freeglut glu)) (arguments `(#:tests? #f ; Tests fail: AttributeError: 'GLXPlatform' object has no ;attribute 'OSMesa' @@ -19798,8 +19378,7 @@ library.") (base32 "01iggy5jwxv7lxnj51zbmlbhag9wcb7dvrbwgi97i90n0a5m3r8j")))) (inputs - `(("mesa" ,mesa) - ("python-numpy" ,python-numpy))) ; for cython module + (list mesa python-numpy)) ; for cython module ; numpy_formathandler, thus not propagated (arguments `(#:tests? #f @@ -19831,8 +19410,7 @@ library.") (lambda _ (delete-file "rencode/t.py") #t))))) - (native-inputs `(("pkg-config" ,pkg-config) - ("python-cython" ,python-cython))) + (native-inputs (list pkg-config python-cython)) (home-page "https://github.com/aresch/rencode") (synopsis "Serialization of heterogeneous data structures") (description @@ -19860,11 +19438,8 @@ pure Python module.") "0nv207ql2wmh9q62503np056c4vf1c1hlsi5cvv5p5kx574k6r2y")))) (build-system python-build-system) (native-inputs - `(("python-pyyaml" ,python-pyyaml) - ("python-radon" ,python-radon) - ("python-requests" ,python-requests) - ("python-flake8" ,python-flake8) - ("python-tox" ,python-tox))) + (list python-pyyaml python-radon python-requests python-flake8 + python-tox)) (arguments `(#:tests? #f ;test suite not shipped with the PyPI archive #:phases @@ -19958,9 +19533,9 @@ ignoring formatting changes.") #t)))))) (home-page "https://pydub.com") (inputs - `(("ffmpeg" ,ffmpeg))) + (list ffmpeg)) (propagated-inputs - `(("python-scipy" ,python-scipy))) + (list python-scipy)) (synopsis "Manipulate audio with a high level interface in Python") (description "@code{pydub} makes it easy to manipulate audio in Python. It relies on @@ -19970,25 +19545,23 @@ ignoring formatting changes.") (define-public python-tqdm (package (name "python-tqdm") - (version "4.43.0") + (version "4.60.0") (source (origin (method url-fetch) (uri (pypi-uri "tqdm" version)) (sha256 (base32 - "093v4c2x5hpigv47zvyxl8wh10y2yd2gvz3l9vchn0zsp8hv2pzk")))) + "1bjpy4mjg6ryp0ijvqi77vgs76l5hh3zrv3x4vmcwxrlbswvvppb")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - ;; This invokation is taken from tox.ini. - (invoke "nosetests" "--ignore-files=\"test_perf.py\"" - "-d" "-v" "tqdm/")))))) + (lambda _ + (invoke "pytest" "-vv" "-k" "not perf")))))) (native-inputs - `(("python-nose" ,python-nose))) + (list python-pytest python-pytest-asyncio python-pytest-timeout + python-setuptools-scm python-toml)) (home-page "https://github.com/tqdm/tqdm") (synopsis "Fast, extensible progress meter") (description @@ -20048,12 +19621,12 @@ created by running @code{python setup.py develop}).") (base32 "11rpd653zcgzkq3sgwkzs3mpxl3r5rij59745ni84ikv8smjmlm3")))) (build-system python-build-system) (propagated-inputs - `(("python-tqdm" ,python-tqdm) - ("python-packaging" ,python-packaging) - ("python-pkginfo" ,python-pkginfo) - ("python-readme-renderer" ,python-readme-renderer) - ("python-requests" ,python-requests) - ("python-requests-toolbelt" ,python-requests-toolbelt))) + (list python-tqdm + python-packaging + python-pkginfo + python-readme-renderer + python-requests + python-requests-toolbelt)) (home-page "https://github.com/pypa/twine") (synopsis "Collection of utilities for interacting with PyPI") (description @@ -20112,7 +19685,7 @@ lines are read from a single file.") (native-inputs `(("python-pbr" ,python-pbr-minimal))) (propagated-inputs - `(("python-linecache2" ,python-linecache2))) + (list python-linecache2 python-six)) (home-page "https://github.com/testing-cabal/traceback2") (synopsis "Backports of the traceback module") @@ -20214,9 +19787,9 @@ services.") "1nii1sz5jq75ilf18bjnr11l9rz1lvdmyk66bxl7q90qan85yhjj")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) (home-page "https://github.com/Changaco/setuptools_scm_git_archive/") (synopsis "Setuptools_scm plugin for git archives") (description @@ -20283,13 +19856,10 @@ Git.") (with-directory-excursion "pyclipper" (invoke "cython" "--cplus" "pyclipper.pyx"))))))) (propagated-inputs - `(("python-setuptools-scm-git-archive" ,python-setuptools-scm-git-archive))) + (list python-setuptools-scm-git-archive)) (native-inputs - `(("python-cython" ,python-cython) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner) - ("python-unittest2" ,python-unittest2) - ("unzip" ,unzip))) + (list python-cython python-pytest python-pytest-runner + python-unittest2 unzip)) (home-page "https://github.com/greginvm/pyclipper") (synopsis "Wrapper for Angus Johnson's Clipper library") (description @@ -20315,13 +19885,9 @@ Angus Johnson's polygon clipping Clipper library (ver. 6.4.2).") (arguments `(#:python ,python-2)) (native-inputs - `(("unzip" ,unzip) - ("python2-pytest" ,python2-pytest) - ("python2-pytest-runner" ,python2-pytest-runner))) + (list unzip python2-pytest python2-pytest-runner)) (propagated-inputs - `(("python-fonttools" ,python2-fonttools) - ("python-pyclipper" ,python2-pyclipper) - ("python-ufolib" ,python2-ufolib))) + (list python2-fonttools python2-pyclipper python2-ufolib)) (home-page "https://github.com/typemytype/booleanOperations") (synopsis "Boolean operations on paths") (description @@ -20395,10 +19961,9 @@ particularly convenient for use in tests.") (lambda (filename) (string-suffix? ".py" filename))))))))) (native-inputs - `(("python-tempdir" ,python-tempdir) - ("python-nose" ,python-nose))) + (list python-tempdir python-nose)) (propagated-inputs - `(("python-h5py" ,python-h5py))) + (list python-h5py)) (home-page "https://www.activepapers.org/") (synopsis "Executable papers for scientific computing") (description @@ -20444,7 +20009,7 @@ such as figshare or Zenodo.") (delete-file "setup.cfg") (invoke "py.test")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/k-bx/python-semver") (synopsis "Python helper for Semantic Versioning") (description "This package provides a Python library for @@ -20468,11 +20033,9 @@ such as figshare or Zenodo.") (arguments '(#:tests? #f)) ;FIXME: Some tests require network access. (native-inputs - `(("python-cloudpickle" ,python-cloudpickle) - ("python-dill" ,python-dill) - ("python-msgpack" ,python-msgpack))) + (list python-cloudpickle python-dill python-msgpack)) (propagated-inputs - `(("python-serpent" ,python-serpent))) + (list python-serpent)) (home-page "https://pyro4.readthedocs.io") (synopsis "Distributed object middleware for Python") (description @@ -20526,10 +20089,9 @@ is the new Pyro version that is actively developed.") "16l48aj9fps9r7jyk8gpxppwrv0fqvlc13sayxskz28r5s6sjwbl")))) (build-system python-build-system) (inputs - `(("netcdf" ,netcdf))) + (list netcdf)) (propagated-inputs - `(("python-numpy" ,python2-numpy-1.8) - ("python-pyro" ,python2-pyro))) + (list python2-numpy-1.8 python2-pyro)) (arguments ;; ScientificPython is not compatible with Python 3 `(#:python ,python-2 @@ -20566,7 +20128,7 @@ not actively maintained and works only with Python 2 and NumPy < 1.9.") "1fqwh3ba9jd42nigvn5shndgwb1zy7kh9520ncvqci7n8ffjr6p1")))) (build-system python-build-system) (native-inputs - `(("netcdf" ,netcdf))) + (list netcdf)) (propagated-inputs `(("python-scientific" ,python2-scientific) ("python-tkinter" ,python-2 "tk"))) @@ -20648,9 +20210,9 @@ queue.") "05pd1hyhqvpw87rnbvl3vdyf619snpyccbswaxisdj17frwnjacf")))) (build-system python-build-system) (propagated-inputs - `(("python-heapdict" ,python-heapdict))) + (list python-heapdict)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://zict.readthedocs.io/en/latest/") (synopsis "Composable mutable mapping tools") (description "This package provides abstract @code{MutableMapping} classes @@ -20699,9 +20261,8 @@ user's @file{~/Trash} directory.") `(modify-phases ,phases (add-before 'check 'setenv (lambda _ - (setenv "PYTHONPATH" - (string-append (getcwd) ":" (getenv "PYTHONPATH"))) - #t))))))))) + (setenv "GUIX_PYTHONPATH" + (string-append (getcwd) ":" (getenv "GUIX_PYTHONPATH")))))))))))) (define-public python-pyfavicon (package @@ -20719,9 +20280,7 @@ user's @file{~/Trash} directory.") ;; repository require online data. '(#:tests? #f)) (propagated-inputs - `(("python-aiohttp" ,python-aiohttp) - ("python-beautifulsoup4" ,python-beautifulsoup4) - ("python-pillow" ,python-pillow))) + (list python-aiohttp python-beautifulsoup4 python-pillow)) (home-page "https://github.com/bilelmoussaoui/pyfavicon") (synopsis "Async favicon fetcher") (description @@ -20740,9 +20299,7 @@ user's @file{~/Trash} directory.") (base32 "090krlxj7az0d9yl8i20vjrqi66dfxx7y5xakjhxzsfp7qmldnc7")))) (build-system python-build-system) (propagated-inputs - `(("python-pathspec" ,python-pathspec) - ("python-pyyaml" ,python-pyyaml) - ("python-setuptools" ,python-setuptools))) + (list python-pathspec python-pyyaml python-setuptools)) (home-page "https://github.com/adrienverge/yamllint") (synopsis "Linter for YAML files") (description @@ -20799,14 +20356,9 @@ style guide, even if the original code didn't violate the style guide.") "/bin/jq"))) #t))))) (inputs - `(("python-argcomplete" ,python-argcomplete) - ("python-pyyaml" ,python-pyyaml) - ("python-xmltodict" ,python-xmltodict) - ("jq" ,jq))) - (native-inputs - `(("python-coverage" ,python-coverage) - ("python-flake8" ,python-flake8) - ("python-wheel" ,python-wheel))) + (list python-argcomplete python-pyyaml python-xmltodict jq)) + (native-inputs + (list python-coverage python-flake8 python-wheel)) (home-page "https://github.com/kislyuk/yq") (synopsis "Command-line YAML/XML processor") (description @@ -20868,7 +20420,7 @@ files, and Makefiles.") (lambda _ (invoke "py.test")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/Suor/whatever") (synopsis "Make anonymous functions by partial application of operators") (description "@code{whatever} provides an easy way to make anonymous @@ -20899,8 +20451,7 @@ functions by partial application of operators.") (lambda _ (invoke "py.test")))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-whatever" ,python-whatever))) + (list python-pytest python-whatever)) (home-page "https://github.com/Suor/funcy") (synopsis "Functional tools") (description "@code{funcy} is a library that provides functional tools. @@ -20985,11 +20536,9 @@ Week instances stringify to this form.") (string-append "'" libzbar "/lib/libzbar.so.0'"))) #t)))))) (native-inputs - `(("pkg-config" ,pkg-config) - ("python-numpy" ,python-numpy) - ("python-pillow" ,python-pillow))) + (list pkg-config python-numpy python-pillow)) (inputs - `(("zbar" ,zbar))) + (list zbar)) (home-page "https://github.com/NaturalHistoryMuseum/pyzbar/") (synopsis "Read one-dimensional barcodes and QR codes") (description @@ -21039,7 +20588,7 @@ and @code{tokens_to_src} to roundtrip.") "0ydxqz2dvns44g55p8ix2x18qkfk3aaz0m0dc70f3g6n8js35h47")))) (build-system python-build-system) (propagated-inputs - `(("python-tokenize-rt" ,python-tokenize-rt))) + (list python-tokenize-rt)) (home-page "https://github.com/asottile/future-fstrings") (synopsis "Backport of fstrings to Python < 3.6") (description @@ -21052,7 +20601,7 @@ source bytes using the UTF-8 encoding and then rewrites Python 3.6 style (define-public python-typed-ast (package (name "python-typed-ast") - (version "1.4.0") + (version "1.4.2") (source (origin (method git-fetch) @@ -21060,29 +20609,16 @@ source bytes using the UTF-8 encoding and then rewrites Python 3.6 style (url "https://github.com/python/typed_ast") (commit version))) (sha256 - (base32 "0l0hz809f7i356kmqkvfsaswiidb98j9hs9rrjnfawzqcbffzgyb")) + (base32 "1wr6pkvvrq6rzjjw88pd5xy8fy06msam4hlxbkglvdmwh4c083l0")) (file-name (git-file-name name version)))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26)) - #:phases + `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH")))) - (invoke "pytest") - #t))))) - (native-inputs `(("python-pytest" ,python-pytest))) + (invoke "pytest")))))) + (native-inputs (list python-pytest)) (home-page "https://github.com/python/typed_ast") (synopsis "Fork of Python @code{ast} modules with type comment support") (description "This package provides a parser similar to the standard @@ -21112,36 +20648,35 @@ based on the CPython 2.7 and 3.7 parsers.") (arguments `(#:phases (modify-phases %standard-phases - (add-before 'check 'disable-failing-tests + ;; Unfortunately, this doesn't seem to be enough to fix these two + ;; tests, but we'll patch this anyway. + (add-after 'unpack 'patch-shell-reference (lambda _ (substitute* "tests/test_completion/test_completion.py" - (("def test_show_completion") - "def _test_show_completion") - (("def test_install_completion") - "def _test_install_completion")) - (substitute* "tests/test_completion/test_completion_install.py" - (("def test_completion_install_bash") - "def _test_completion_install_bash") - (("def test_completion_install_zsh") - "def _test_completion_install_zsh") - (("def test_completion_install_fish") - "def _test_completion_install_fish") - (("def test_completion_install_powershell") - "def _test_completion_install_powershell")) - #t)) + (("\"bash\"") (string-append "\"" (which "bash") "\"")) + (("\"/bin/bash\"") (string-append "\"" (which "bash") "\""))))) (replace 'check - (lambda _ - (setenv "PYTHONPATH" - (string-append (getcwd) ":" - (getenv "PYTHONPATH"))) - (invoke "python" "-m" "pytest" "tests/") - #t))))) - (propagated-inputs - `(("python-click" ,python-click))) - (native-inputs - `(("python-coverage" ,python-coverage) - ("python-pytest" ,python-pytest) - ("python-shellingham" ,python-shellingham))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp") ; some tests need it + + ;; This is for completion tests + (with-output-to-file "/tmp/.bashrc" (lambda _ (display "# dummy"))) + + (setenv "GUIX_PYTHONPATH" + (string-append (getcwd) ":" + (getenv "GUIX_PYTHONPATH"))) + (let ((disabled-tests (list "test_show_completion" + "test_install_completion"))) + (invoke "python" "-m" "pytest" "tests/" + "-k" + (string-append "not " + (string-join disabled-tests + " and not ")))))))))) + (propagated-inputs + (list python-click)) + (native-inputs + (list python-coverage python-pytest python-shellingham)) (home-page "https://github.com/tiangolo/typer") (synopsis "Typer builds CLI based on Python type hints") @@ -21215,13 +20750,13 @@ Included are implementations of: (define-public bpython (package (name "bpython") - (version "0.20.1") + (version "0.21") (source (origin (method url-fetch) (uri (pypi-uri "bpython" version)) (sha256 - (base32 "00vmkkc79mlnkyvwww1cr7bpwmf4p61704dhayz6kd0kc203hxvf")))) + (base32 "11wlf12nm6ggn9512y4yqs26s8gdgpx0h9ls94k7fsjgjy4rpal8")))) (build-system python-build-system) (arguments `(#:phases @@ -21242,19 +20777,19 @@ Included are implementations of: '("bpython3" "bpython3-curses" "bpython3-urwid" "bpdb3"))) #t))))) (propagated-inputs - `(("python-pygments" ,python-pygments) - ("python-requests" ,python-requests) - ("python-curtsies" ,python-curtsies) - ("python-greenlet" ,python-greenlet) - ("python-six" ,python-six) - ("python-wcwidth" ,python-wcwidth) - ;; optional dependencies - ("python-urwid" ,python-urwid) ; for bpython-urwid only - ("python-watchdog" ,python-watchdog) - ("python-jedi" ,python-jedi))) - (native-inputs - `(("python-sphinx" ,python-sphinx) - ("python-mock" ,python-mock))) + (list python-pygments + python-requests + python-curtsies + python-greenlet + python-six + python-cwcwidth + python-pyxdg + ;; optional dependencies + python-urwid ; for bpython-urwid only + python-watchdog + python-jedi)) + (native-inputs + (list python-sphinx python-mock python-tox python-wheel)) (home-page "https://bpython-interpreter.org/") (synopsis "Fancy interface to the Python interpreter") (description "Bpython is a fancy interface to the Python @@ -21310,7 +20845,7 @@ file system events on Linux.") "14gv8ll3ipqv4kyc2xiy891nrmjl4ic823zfyx8hassagyclyppw")))) (build-system python-build-system) (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (arguments `(#:python ,python-2 #:tests? #f @@ -21400,7 +20935,7 @@ working with iterables.") (base32 "0wnp3yqcgx0rpy8dz51vh75lbp2qif67da19zi7m3ca98n887hgb")))) (build-system python-build-system) (inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://readthedocs.org/projects/latexcodec/") (synopsis "Work with LaTeX code in Python") (description "Lexer and codec to work with LaTeX code in Python.") @@ -21418,11 +20953,9 @@ working with iterables.") (base32 "070wfcmxrd7xg1si421mi9150gmx2qwx431nwf69sq3hhmgnx080")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (inputs - `(("python-latexcodec" ,python-latexcodec) - ("python-pyyaml" ,python-pyyaml) - ("python-six" ,python-six))) + (list python-latexcodec python-pyyaml python-six)) (arguments `(#:test-target "nosetests")) (home-page "https://pybtex.org/") @@ -21442,7 +20975,7 @@ in Python. You can simply type pybtex instead of bibtex.") (sha256 (base32 "09vagxgbq78wvq4xbikmn2hpqqsa2i96kqsmphf7dqynfv0dlsd5")))) (build-system python-build-system) - (propagated-inputs `(("python-six" ,python-six))) + (propagated-inputs (list python-six)) (home-page "https://github.com/tadeck/onetimepass/") (synopsis "One-time password library") (description "Python one-time password library for HMAC-based (HOTP) and @@ -21460,7 +20993,7 @@ time-based (TOTP) passwords.") (sha256 (base32 "161k8771m7w60qakyvrwf9q62lvakmix7mpfylpy7713qs939f0j")))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases @@ -21489,7 +21022,7 @@ Parso is also able to list multiple syntax errors in your Python file.") "0i11f6z6lix8ixi3vsk6s76zvvpmgrw6zjrcwjm0m4hjdh83vfvf")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/python-trio/async_generator") (synopsis "Async generators and context managers for Python 3.5+") (description "@code{async_generator} back-ports Python 3.6's native async @@ -21564,9 +21097,9 @@ Glob2 currently based on the glob code from Python 3.3.1.") "0pd9by719qh882hqs6xpby61sn1x5h98hms5p2p8yqnycrf1s0h2")))) (build-system python-build-system) (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (propagated-inputs - `(("python-gevent" ,python-gevent))) + (list python-gevent)) (home-page "https://gehrcke.de/gipc/") (synopsis "Child process management in the context of gevent") (description "Usage of Python's multiprocessing package in a @@ -21588,7 +21121,7 @@ gevent-powered application.") "0wwlbifcbpzy3wfv6yzsxncarsngzizmmxbn6cy5gazlcq7h4k5x")))) (build-system python-build-system) (propagated-inputs - `(("python-wcwidth" ,python-wcwidth))) + (list python-wcwidth)) (arguments `(#:phases (modify-phases %standard-phases @@ -21662,14 +21195,13 @@ path components.") (("setup\\(") "setup(\n test_suite=\"test\","))))))) (propagated-inputs - `(("python-beautifultable" ,python-beautifultable) - ("python-dateutil" ,python-dateutil) - ("python-gitpython" ,python-gitpython) - ("python-globber" ,python-globber) - ("python-matplotlib" ,python-matplotlib) - ("python-sqlalchemy" ,python-sqlalchemy) - ("python-sqlalchemy-utils" - ,python-sqlalchemy-utils))) + (list python-beautifultable + python-dateutil + python-gitpython + python-globber + python-matplotlib + python-sqlalchemy + python-sqlalchemy-utils)) (home-page "https://github.com/asharov/git-hammer") (synopsis "Provide statistics for git repositories") (description @@ -21701,7 +21233,7 @@ commit, but it also includes some other useful statistics.") (string-append "'" fuse "/lib/libfuse.so'"))) #t)))))) (propagated-inputs - `(("fuse" ,fuse))) + (list fuse)) (home-page "https://github.com/fusepy/fusepy") (synopsis "Simple ctypes bindings for FUSE") (description "Python module that provides a simple interface to FUSE and @@ -21734,9 +21266,9 @@ MacFUSE. The binding is created using the standard @code{ctypes} library.") (string-append "\"" fuse "/lib/libfuse.so\"")))) #t))))) (inputs - `(("fuse" ,fuse))) + (list fuse)) (propagated-inputs - `(("python-paramiko" ,python-paramiko))) + (list python-paramiko)) (home-page "https://github.com/rianhunter/fusepyng") (synopsis "Simple ctypes bindings for FUSE") (description "@code{fusepyng} is a Python module that provides a simple @@ -21744,6 +21276,25 @@ interface to FUSE on various operating systems. It's just one file and is implemented using @code{ctypes}.") (license license:isc))) +(define-public python-update-checker + (package + (name "python-update-checker") + (version "0.18.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "update-checker" version)) + (sha256 + (base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba")))) + (build-system python-build-system) + (propagated-inputs (list python-requests)) + (native-inputs (list python-black python-flake8 python-pytest)) + (home-page "https://github.com/bboe/update_checker") + (synopsis "Python module that will check for package updates") + (description "This package provides a Python module that will check for +package updates.") + (license license:bsd-2))) + (define-public python-userspacefs (package (name "python-userspacefs") @@ -21757,7 +21308,7 @@ implemented using @code{ctypes}.") "06f2gsiypas270nqfjir4wwjlpkjp097pm6zchc7k20ggg32gv1k")))) (build-system python-build-system) (propagated-inputs - `(("python-fusepyng" ,python-fusepyng))) + (list python-fusepyng)) (home-page "https://github.com/rianhunter/userspacefs") (synopsis "User-space file systems for Python") (description @@ -21787,8 +21338,7 @@ user-space file systems in Python.") (("pytest < 5") "pytest < 7")) ;; We don't care about a coverage report. (substitute* "test/requirements.txt" - (("coverage.*") "coverage\n")) - #t)) + (("coverage.*") "coverage\n")))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? @@ -21796,19 +21346,11 @@ user-space file systems in Python.") (delete-file "test/test_js_client.py") (delete-file "test/test_tsd_types.py") (delete-file "test/test_python_gen.py") - (setenv "PYTHONPATH" - (string-append (getcwd) ":" - (getenv "PYTHONPATH"))) - (invoke "pytest")) - #t))))) + (invoke "pytest"))))))) (propagated-inputs - `(("python-ply" ,python-ply) - ("python-six" ,python-six))) + (list python-ply python-six)) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-coverage python-mock python-pytest python-pytest-runner)) (home-page "https://github.com/dropbox/stone") (synopsis "Official Api Spec Language for Dropbox") (description @@ -21878,9 +21420,7 @@ inferring type information using compile-time introspection.") (arguments `(#:tests? #f)) ;requires online data (propagated-inputs - `(("python-appdirs" ,python-appdirs) - ("python-packaging" ,python-packaging) - ("python-requests" ,python-requests))) + (list python-appdirs python-packaging python-requests)) (home-page "https://github.com/fatiando/pooch") (synopsis "Manage your Python library's sample data files") (description @@ -21902,10 +21442,9 @@ and corruption checks.") "1vzmz1xh38b84dv0f4hlp7arwmx8wjlih6lf964bpy8dnyk6s5rs")))) (build-system python-build-system) (propagated-inputs - `(("python-monotonic" ,python-monotonic) - ("python-six" ,python-six))) + (list python-monotonic python-six)) (native-inputs - `(("python-testtools" ,python-testtools))) + (list python-testtools)) (home-page "https://github.com/harlowja/fasteners") (synopsis "Python package that provides useful locks") (description @@ -21932,8 +21471,7 @@ and corruption checks.") "1yp2jaxg3v86pia0q512dg3hz6s9y5vzdivsgrba1kds05ial14g")))) (build-system python-build-system) (propagated-inputs - `(("python-requests" ,python-requests) - ("python-six" ,python-six))) + (list python-requests python-six)) (home-page "https://github.com/dashea/requests-file") (synopsis "File transport adapter for Requests") @@ -21963,14 +21501,16 @@ library to allow local file system access via @code{file://} URLs.") (arguments `(#:phases (modify-phases %standard-phases + ;; system-error "utime" "~A" ("No such file or directory") + (delete 'ensure-no-mtimes-pre-1980) (replace 'check - (lambda _ - (invoke "pytest" "-vv")))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv"))))))) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-pytest" ,python-pytest))) + (list python-coverage python-pytest)) (propagated-inputs - `(("python-editdistance" ,python-editdistance))) + (list python-editdistance)) (home-page "https://github.com/chriskuehl/identify") (synopsis "File identification library for Python") (description @@ -21992,12 +21532,9 @@ identifying what the file is.") "1d5s8v6kpsgazyahflhji1cfdcf89rv7l7z55v774bhzvcjp2y99")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-responses" ,python-responses))) + (list python-pytest python-responses)) (propagated-inputs - `(("python-idna" ,python-idna) - ("python-requests" ,python-requests) - ("python-requests-file" ,python-requests-file))) + (list python-idna python-requests python-requests-file)) (home-page "https://github.com/john-kurkowski/tldextract") (synopsis @@ -22036,12 +21573,9 @@ Public Suffix List's private domains as well.") ;; This test fails. It tries to open a network socket. (invoke "pytest" "-vv" "-k" "not test_error_message"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-pytest python-pytest-runner)) (inputs - `(("python-argcomplete" ,python-argcomplete) - ("python-colorama" ,python-colorama) - ("python-termcolor" ,python-termcolor))) + (list python-argcomplete python-colorama python-termcolor)) (home-page "https://github.com/tldr-pages/tldr-python-client") (synopsis "Python command-line client for tldr pages") (description "This package provides the @code{tldr} command allowing users @@ -22072,9 +21606,7 @@ effort to simplify the man pages with practical examples.") ;; This test fails. It tries to open a network socket. (invoke "pytest" "-vv" "-k" "not test_smoke")))))) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-coverage python-mock python-pytest)) (home-page "https://ekalinin.github.io/nodeenv/") (synopsis "Create isolated node.js environments") (description @@ -22097,7 +21629,7 @@ environments.") "0wkbwz208j8nfrsmzmclvxg22ymknn0mlz76wbdza9k2bx2zja6l")))) (build-system python-build-system) (propagated-inputs - `(("python-requests" ,python-requests))) + (list python-requests)) (home-page "https://github.com/Bemmu/PyNamecheap") (synopsis @@ -22124,11 +21656,8 @@ environments.") (arguments `(#:tests? #f)) ;requires internet access (propagated-inputs - `(("python-future" ,python-future) - ("python-pynamecheap" ,python-pynamecheap) - ("python-requests" ,python-requests) - ("python-tldextract" ,python-tldextract) - ("python-urllib3" ,python-urllib3))) + (list python-future python-pynamecheap python-requests + python-tldextract python-urllib3)) (home-page "https://github.com/AnalogJ/lexicon") (synopsis "Manipulate DNS records on various DNS providers") @@ -22164,9 +21693,7 @@ Let's Encrypt.") (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - `(("python-covdefaults" ,python-covdefaults) - ("python-coverage" ,python-coverage) - ("python-pytest" ,python-pytest))) + (list python-covdefaults python-coverage python-pytest)) (home-page "https://github.com/asottile/cfgv") (synopsis "Configuration validation library") (description @@ -22199,14 +21726,14 @@ validation testing and application logic.") (define-public python-numba (package (name "python-numba") - (version "0.51.2") + (version "0.54.1") (source (origin (method url-fetch) (uri (pypi-uri "numba" version)) (sha256 (base32 - "0s0777m8kq4l96i88zj78np7283v1n4878qfc1gvzb8l45bmkg8n")))) + "0gzl2hz9azav9mny4mga19096rrnpw5816r1h4iwrvb4r01wipzr")))) (build-system python-build-system) (arguments `(#:phases @@ -22214,24 +21741,27 @@ validation testing and application logic.") (add-after 'unpack 'disable-proprietary-features (lambda _ (setenv "NUMBA_DISABLE_HSA" "1") - (setenv "NUMBA_DISABLE_CUDA" "1") - #t)) + (setenv "NUMBA_DISABLE_CUDA" "1"))) + (add-after 'unpack 'disable-failing-tests + (lambda _ + ;; This one test fails because a deprecation warning is printed. + (substitute* "numba/tests/test_import.py" + (("def test_no_accidental_warnings") + "def disabled_test_no_accidental_warnings")))) (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - ;; Something is wrong with the PYTHONPATH when running the - ;; tests from the build directory, as it complains about not being - ;; able to import certain modules. - (with-directory-excursion "/tmp" - (setenv "HOME" (getcwd)) - (invoke "python3" "-m" "numba.runtests" "-v" "-m"))))))) + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + ;; Something is wrong with the PYTHONPATH when running the + ;; tests from the build directory, as it complains about not being + ;; able to import certain modules. + (with-directory-excursion "/tmp" + (setenv "HOME" (getcwd)) + (invoke "python3" "-m" "numba.runtests" "-v" "-m")))))))) (propagated-inputs - `(("python-llvmlite" ,python-llvmlite) - ("python-numpy" ,python-numpy) - ("python-singledispatch" ,python-singledispatch))) + (list python-llvmlite python-numpy python-singledispatch)) (native-inputs ;for tests - `(("python-jinja2" ,python-jinja2) - ("python-pygments" ,python-pygments))) + (list python-jinja2 python-pygments)) (home-page "https://numba.pydata.org") (synopsis "Compile Python code using LLVM") (description "Numba gives you the power to speed up your applications with @@ -22292,17 +21822,12 @@ tool).") (add-installed-pythonpath inputs outputs) (invoke "pytest" "-vv"))))))) (inputs - `(("c-blosc" ,c-blosc) - ("lz4" ,lz4) - ("zlib" ,zlib) - ("zstd" ,zstd "lib"))) + (list c-blosc lz4 zlib + `(,zstd "lib"))) (propagated-inputs - `(("python-numpy" ,python-numpy) - ("python-msgpack" ,python-msgpack))) + (list python-numpy python-msgpack)) (native-inputs - `(("python-cython" ,python-cython) - ("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-cython python-pytest python-setuptools-scm)) (home-page "https://github.com/zarr-developers/numcodecs") (synopsis "Buffer compression and transformation codecs") (description @@ -22353,13 +21878,10 @@ codecs for use in data storage and communication applications.") (invoke "pytest" "-vv" "-k" "not lmdb") #t))))) (propagated-inputs - `(("python-asciitree" ,python-asciitree) - ("python-fasteners" ,python-fasteners) - ("python-numcodecs" ,python-numcodecs) - ("python-numpy" ,python-numpy))) + (list python-asciitree python-fasteners python-numcodecs + python-numpy)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-pytest python-setuptools-scm)) (home-page "https://github.com/zarr-developers/zarr-python") (synopsis "Chunked, compressed, N-dimensional arrays for Python") (description @@ -22410,20 +21932,17 @@ N-dimensional arrays for Python.") (find-files "dist" "\\.whl$"))) #t))))) (propagated-inputs - `(("python-h5py" ,python-h5py) - ("python-importlib-metadata" ,python-importlib-metadata) - ("python-natsort" ,python-natsort) - ("python-numcodecs" ,python-numcodecs) - ("python-packaging" ,python-packaging) - ("python-pandas" ,python-pandas) - ("python-scipy" ,python-scipy) - ("python-zarr" ,python-zarr))) - (native-inputs - `(("python-joblib" ,python-joblib) - ("python-pytest" ,python-pytest) - ("python-toml" ,python-toml) - ("python-flit" ,python-flit) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-h5py + python-importlib-metadata + python-natsort + python-numcodecs + python-packaging + python-pandas + python-scipy + python-zarr)) + (native-inputs + (list python-joblib python-pytest python-toml python-flit + python-setuptools-scm)) (home-page "https://github.com/theislab/anndata") (synopsis "Annotated data for data analysis pipelines") (description "Anndata is a package for simple (functional) high-level APIs @@ -22453,7 +21972,7 @@ object-oriented library such as @code{scikit-learn}.") (invoke "nosetests" "-v")) #t))))) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://pypi.org/project/dill/") (synopsis "Serialize all of Python") (description "Dill extends Python's @code{pickle} module for serializing @@ -22500,7 +22019,7 @@ the saved state of the original interpreter session.") (invoke "python" "-m" "multiprocess.tests") #t))))) (propagated-inputs - `(("python-dill" ,python-dill))) + (list python-dill)) (home-page "https://pypi.org/project/multiprocess/") (synopsis "Multiprocessing and multithreading in Python") (description @@ -22531,7 +22050,7 @@ library's @code{threading} module.") (invoke "python" "-m" "pytest" "--doctest-modules" "--pyargs" "toolz"))))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/pytoolz/toolz/") (synopsis "List processing tools and functional utilities") (description @@ -22542,22 +22061,25 @@ functions, and dictionaries.") (define-public python-cytoolz (package (name "python-cytoolz") - (version "0.9.0.1") + (version "0.11.2") (source (origin (method url-fetch) (uri (pypi-uri "cytoolz" version)) (sha256 (base32 - "1r80p88hm3f3r4zpixzr047y5hw4bzy41m4xywnhycda83x0dk44")))) + "1d12mgaippxxhn24w2hj0my3aqkx80fks5g4wzfdsvl0acqnc8za")) + (modules '((guix build utils))) + (snippet + '(for-each delete-file (find-files "cytoolz" "\\.c$"))))) (build-system python-build-system) ;; FIXME: tests fail with "module 'cytoolz.curried' has no attribute ;; 'exceptions'" (arguments '(#:tests? #f)) (propagated-inputs - `(("python-toolz" ,python-toolz))) + (list python-toolz)) (native-inputs - `(("python-cython" ,python-cython))) + (list python-cython)) (home-page "https://github.com/pytoolz/cytoolz") (synopsis "High performance functional utilities") (description @@ -22566,6 +22088,22 @@ main differences are that @code{cytoolz} is faster and cytoolz offers a C API that is accessible to other projects developed in Cython.") (license license:bsd-3))) +;; python-cooler doesn't work with 0.11 yet +(define-public python-cytoolz-for-cooler + (package + (inherit python-cytoolz) + (version "0.10.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cytoolz" version)) + (sha256 + (base32 + "0p4a9nadsy1337gy2cnb5yanbn03j3zm6d9adyqad9bk3nlbpxc2")) + (modules '((guix build utils))) + (snippet + '(for-each delete-file (find-files "cytoolz" "\\.c$"))))))) + (define-public python-sortedcollections (package (name "python-sortedcollections") @@ -22579,7 +22117,7 @@ that is accessible to other projects developed in Cython.") "1kfabpnjyjm5ml2zspry9jy3xq49aybchgaa4ahic2jqdjfn1sfq")))) (build-system python-build-system) (propagated-inputs - `(("python-sortedcontainers" ,python-sortedcontainers))) + (list python-sortedcontainers)) (arguments '(#:tests? #f)) ; Tests not included in release tarball. (home-page "http://www.grantjenks.com/docs/sortedcollections/") (synopsis "Python Sorted Collections") @@ -22656,24 +22194,15 @@ data.") (arguments '(#:phases (modify-phases %standard-phases - (add-before 'check 'do-not-override-PYTHONPATH - (lambda _ - ;; Append to PYTHONPATH instead of overriding it so - ;; that dependencies from Guix can be found. - (substitute* "tests/testutils.py" - (("env\\['PYTHONPATH'\\] = pythonpath") - "env['PYTHONPATH'] += os.pathsep + pythonpath")))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (if tests? (invoke "pytest" "-s" "-vv") (format #t "test suite not run~%"))))))) (native-inputs - `(;; For tests. - ("python-cloudpickle-testpkg" ,python-cloudpickle-testpkg) - ("python-psutil" ,python-psutil) - ("python-pytest" ,python-pytest) - ("python-tornado" ,python-tornado-6))) + (list ;; For tests. + python-cloudpickle-testpkg python-psutil python-pytest + python-tornado-6)) (home-page "https://github.com/cloudpipe/cloudpickle") (synopsis "Extended pickling support for Python objects") (description @@ -22744,7 +22273,7 @@ they use the same path.") ;; TypeError: calling <function run at 0x7ffff2568d90> returned None, not a test (arguments '(#:tests? #f)) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (home-page "https://github.com/blosc/python-blosc") (synopsis "Python wrapper for the Blosc data compressor library") (description "Blosc is a high performance compressor optimized for binary @@ -22775,12 +22304,12 @@ This Python package wraps the Blosc library.") "1sy3vdfyyx3bc5590zb7gwpsmimqz8m992x9hsydq8nmhixqjrxa")))) (build-system python-build-system) (propagated-inputs - `(("python-blosc" ,python-blosc) - ("python-locket" ,python-locket) - ("python-numpy" ,python-numpy) - ("python-pandas" ,python-pandas) - ("python-pyzmq" ,python-pyzmq) - ("python-toolz" ,python-toolz))) + (list python-blosc + python-locket + python-numpy + python-pandas + python-pyzmq + python-toolz)) (home-page "https://github.com/dask/partd/") (synopsis "Appendable key-value storage") (description "Partd stores key-value pairs. Values are raw bytes. We @@ -22812,38 +22341,34 @@ decisions with any given backend.") (define-public python-dask (package (name "python-dask") - (version "2021.9.1") + (version "2021.11.2") (source (origin - (method url-fetch) - (uri (pypi-uri "dask" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/dask/dask/") + (commit "5a8275dd53193b47457cdfadc0e2356ea3eb6ccd"))) + (file-name (git-file-name name version)) (sha256 - (base32 "0p6nd8wi30l29g5hdwk0453w6fxg4zvxq1y1ix0fa2f8rbr2n7z1")))) + (base32 "0h8w7c03mn6s2mmwbqd2sqay3k4vaqiwlsbvliziggw28042zfw2")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'disable-broken-tests - (lambda _ - ;; This test is marked as xfail when pytest-xdist is used. - (substitute* "dask/tests/test_threaded.py" - (("def test_interrupt\\(\\)" m) - (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" - m))))) (replace 'check - (lambda _ (invoke "pytest" "-vv")))))) - (propagated-inputs - `(("python-cloudpickle" ,python-cloudpickle) - ("python-fsspec" ,python-fsspec) - ("python-numpy" ,python-numpy) - ("python-packaging" ,python-packaging) - ("python-pandas" ,python-pandas) - ("python-partd" ,python-partd) - ("python-toolz" ,python-toolz) - ("python-pyyaml" ,python-pyyaml))) - (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? (invoke "pytest" "-vv"))))))) + (propagated-inputs + (list python-cloudpickle + python-fsspec + python-numpy + python-packaging + python-pandas + python-partd + python-toolz + python-pyyaml)) + (native-inputs + (list python-pytest python-pytest-runner python-pytest-rerunfailures)) (home-page "https://github.com/dask/dask/") (synopsis "Parallel computing with task scheduling") (description @@ -22867,8 +22392,8 @@ run on top of the dynamic task schedulers. ") (base32 "0nrw4sr3afldrp7073hvc0rgdz282s0l819jdmj1i6nn05v33h0l")))) (build-system python-build-system) - (native-inputs `(("python-pytest" ,python-pytest))) - (inputs `(("python" ,python))) + (native-inputs (list python-pytest)) + (inputs (list python)) (home-page "https://github.com/luther9/ilinkedlist-py") (synopsis "Immutable linked list library") (description @@ -22949,7 +22474,7 @@ on regular expressions.") "1kqipkbdaw5s1xg0gi29awm03vp1x8dz24pjidgxagvkvrjpzhi7")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://github.com/rholder/retrying") (synopsis "Library for adding retry behavior") (description "Retrying is a general-purpose retrying library to simplify @@ -22982,14 +22507,14 @@ Features: ;; attribute 'empty_template_setup'". `(#:tests? #false)) (propagated-inputs - `(("python-cfgv" ,python-cfgv) - ("python-identify" ,python-identify) - ("python-importlib-metadata" ,python-importlib-metadata) - ("python-importlib-resources" ,python-importlib-resources) - ("python-nodeenv" ,python-nodeenv) - ("python-pyyaml" ,python-pyyaml) - ("python-toml" ,python-toml) - ("python-virtualenv" ,python-virtualenv))) + (list python-cfgv + python-identify + python-importlib-metadata + python-importlib-resources + python-nodeenv + python-pyyaml + python-toml + python-virtualenv)) (home-page "https://github.com/pre-commit/pre-commit") (synopsis "Framework for managing multi-language pre-commit hooks") (description @@ -23029,7 +22554,7 @@ RFC 8265 and RFC 8266.") "1mp9lk0b2qa37b7y6ak4lvf6ifw2ylyy6bkf9ik77md3j4xrwlc7")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://github.com/abseil/abseil-py") (synopsis "Abseil Python common libraries") (description @@ -23073,8 +22598,7 @@ source via the Abstract Syntax Tree.") (build-system python-build-system) (arguments '(#:tests? #f)) ; there are none (propagated-inputs - `(("python-six" ,python-six) - ("python-wheel" ,python-wheel))) + (list python-six python-wheel)) (home-page "https://github.com/simonpercivall/astunparse") (synopsis "AST unparser for Python") (description "This package provides an AST unparser for Python. It is a @@ -23085,16 +22609,16 @@ distribution.") (define-public python-gast (package (name "python-gast") - (version "0.3.3") + (version "0.5.2") (source (origin (method url-fetch) (uri (pypi-uri "gast" version)) (sha256 - (base32 "0mrvvfzqafj1wzd0xxfmjf4vphnlxypbhpic1m283aj9i8lfz0dq")))) + (base32 "1xv77kzghiqfm4fnvlv0p878ma152dvcfkly3jij89lqigxcw7zq")))) (build-system python-build-system) (propagated-inputs - `(("python-astunparse" ,python-astunparse))) + (list python-astunparse)) (home-page "https://pypi.org/project/gast/") (synopsis "Generic Python AST that abstracts the underlying Python version") (description @@ -23116,7 +22640,7 @@ module.") "08nlnydddfp1jj0cdmshvld1irzngbp3dij928wqsg9ziklm6mw9")))) (build-system python-build-system) (propagated-inputs - `(("python-babel" ,python-babel))) + (list python-babel)) (home-page "https://github.com/dahlia/wikidata") (synopsis "Wikidata client library") (description @@ -23138,7 +22662,7 @@ module.") "1m9aa4qnyj21lbq4sbvmv1vcz7zksss4rz37ddf2hxv4hk8b547w")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/gnublade/doctest-ignore-unicode") (synopsis "Ignore Unicode literal prefixes in doctests") (description @@ -23179,10 +22703,7 @@ class in a @acronym{DRY, Don't Repeat Yourself} way.") (arguments `(#:tests? #f)) ; No tests exist. (propagated-inputs - `(("python-extras" ,python-extras) - ("python-arrow" ,python-arrow) - ("python-numpy" ,python-numpy) - ("python-ruamel.yaml" ,python-ruamel.yaml))) + (list python-extras python-arrow python-numpy python-ruamel.yaml)) (home-page "https://construct.readthedocs.io") (synopsis "Declarative and symmetrical parser and builder for binary data") (description @@ -23213,12 +22734,9 @@ make your work easier.") (add-installed-pythonpath inputs outputs) (invoke "pytest" "-vv")))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-asyncio" ,python-pytest-asyncio))) + (list python-pytest python-pytest-cov python-pytest-asyncio)) (propagated-inputs - `(("python-async-generator" ,python-async-generator) - ("python-attrs" ,python-attrs))) + (list python-async-generator python-attrs)) (home-page "https://github.com/python-trio/outcome") (synopsis "Capture the outcome of Python function calls") (description @@ -23230,13 +22748,13 @@ project.") (define-public python-trio (package (name "python-trio") - (version "0.17.0") + (version "0.19.0") (source (origin (method url-fetch) (uri (pypi-uri "trio" version)) (sha256 - (base32 "0zcxirpdvvl54pbfkgw7vz984879xwvdygqfpggnam24is2zjp78")))) + (base32 "1qgg4zhca81dxc1nlmcr5pl1bclmvdp3niqbyslwxs65bs732pl9")))) (build-system python-build-system) (arguments `(#:phases @@ -23247,39 +22765,43 @@ project.") (setenv "HOME" "/tmp") #t)) (replace 'check - (lambda _ - (invoke "pytest" "-vv" "-k" - (string-append - ;; This test times out. - "not test_ki_protection_works" - ;; Assertion errors. - " and not test_guest_mode_ki" - " and not test_run_in_trio_thread_ki" - ;; These try to raise KeyboardInterrupt which does not work - ;; in the build environment. - " and not test_ki_self" - " and not test_ki_wakes_us_up" - ;; Failure in name resolution. - " and not test_getnameinfo" - " and not test_SocketType_resolve" - ;; OSError: protocol not found. - " and not test_getprotobyname"))))))) - (native-inputs - `(("python-astor" ,python-astor) - ("python-ipython" ,python-ipython) - ("python-jedi" ,python-jedi) - ("python-pylint" ,python-pylint) - ("python-pyopenssl" ,python-pyopenssl) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-trustme" ,python-trustme))) - (propagated-inputs - `(("python-attrs" ,python-attrs) - ("python-idna" ,python-idna) - ("python-outcome" ,python-outcome) - ("python-sniffio" ,python-sniffio) - ("python-sortedcontainers" - ,python-sortedcontainers))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv" "-k" + (string-append + ;; This test times out. + "not test_ki_protection_works" + ;; Assertion errors. + " and not test_guest_mode_ki" + " and not test_run_in_trio_thread_ki" + " and not test_simple_cancel_scope_usage_doesnt_create_cyclic_garbage" + " and not test_nursery_cancel_doesnt_create_cyclic_garbage" + " and not test_locals_destroyed_promptly_on_cancel" + ;; These try to raise KeyboardInterrupt which does not work + ;; in the build environment. + " and not test_ki_self" + " and not test_ki_wakes_us_up" + ;; Failure in name resolution. + " and not test_getnameinfo" + " and not test_SocketType_resolve" + ;; OSError: protocol not found. + " and not test_getprotobyname")))))))) + (native-inputs + (list python-astor + python-ipython + python-jedi + python-pylint + python-pyopenssl + python-pytest + python-pytest-cov + python-trustme)) + (propagated-inputs + (list python-async-generator + python-attrs + python-idna + python-outcome + python-sniffio + python-sortedcontainers)) (home-page "https://github.com/python-trio/trio") (synopsis "Friendly Python library for async concurrency and I/O") (description @@ -23307,15 +22829,10 @@ programs that do multiple things at the same time with parallelized I/O.") (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - `(("python-attrs" ,python-attrs) - ("python-pytest" ,python-pytest))) + (list python-attrs python-pytest)) (propagated-inputs - `(("python-mypy" ,python-mypy) - ("python-mypy-extensions" - ,python-mypy-extensions) - ("python-trio" ,python-trio) - ("python-typing-extensions" - ,python-typing-extensions))) + (list python-mypy python-mypy-extensions python-trio + python-typing-extensions)) (home-page "https://github.com/python-trio/trio-typing") (synopsis "Static type checking support for Trio and related projects") (description @@ -23371,8 +22888,7 @@ and dates in \"human readable\" forms. For example, it would display "1zmpdph6zddgrnkkcykh6qk5s46l7s5mzfqrh82m4b5iffn61qv7")))) (build-system python-build-system) (propagated-inputs - `(("python-twisted" ,python-twisted) - ("python-six" ,python-six))) + (list python-twisted python-six)) (home-page "https://github.com/crossbario/txaio") (synopsis "Compatibility layer between Python asyncio and Twisted") (description "Txaio provides a compatibility layer between the Python @@ -23392,7 +22908,7 @@ and dates in \"human readable\" forms. For example, it would display "14zvz51gzf9i1i3d1sj363ba4rksl6lcf4lz1arl8hpqgcbir8r3")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/brentp/toolshed/") (synopsis "Collection of modules and functions for working with data") (description "This is a collection of well-tested, simple modules and @@ -23412,7 +22928,7 @@ functions that aim to reduce boilerplate when working with data.") "1rxn6snn0r32r07g45hdjhh8aa1xzx6fjrm8g62d8vzp46z7rzrp")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/spotify/annoy/") (synopsis "Approximate nearest neighbors library") (description @@ -23434,8 +22950,7 @@ processes may share the same data.") "0r79cx4v2dw4hzr0annkkxxis46c8hivq61sr39z6p7lcjsbk1ki")))) (build-system python-build-system) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-natsort" ,python-natsort))) + (list python-dateutil python-natsort)) (home-page "https://github.com/kiorky/croniter") (synopsis "Iterate datetime objects with cron-like syntax") (description @@ -23458,7 +22973,7 @@ format.") ;; Comptability tests fail so they are disabled. `(#:tests? #f)) (inputs - `(("python-dateutil" ,python-dateutil))) + (list python-dateutil)) (home-page "https://gitlab.com/doctormo/python-crontab/") (synopsis "Module for reading and writing crontab files") (description "This Python module can read, write crontab files, and @@ -23504,7 +23019,7 @@ by Igor Pavlov.") (replace 'check (lambda _ (invoke "nosetests")))))) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/pydron/ifaddr") (synopsis "Network interface and IP address enumeration library") (description "This package provides a network interface and IP address @@ -23524,9 +23039,9 @@ enumeration library in Python.") "0narq8haa3b375vfblbyil77n8bw0wxqnanl91pl0wwwm884mqjb")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (propagated-inputs - `(("python-ifaddr" ,python-ifaddr))) + (list python-ifaddr)) (arguments `(#:phases (modify-phases %standard-phases @@ -23583,17 +23098,16 @@ compatible).") (define-public python-bsddb3 (package (name "python-bsddb3") - (version "6.2.6") + (version "6.2.9") (source (origin (method url-fetch) (uri (pypi-uri "bsddb3" version)) (sha256 - (base32 - "019db2y6bfmiqbrgg9x9f6h72qjmqh05czdn2v5sy9bl0gs23mj2")))) + (base32 "00bqdsfx8jgmfz5bgkx10nlw5bfsw11a86f91zkl53snvk45xl3h")))) (build-system python-build-system) (inputs - `(("bdb" ,bdb))) + (list bdb)) (arguments '(#:phases (modify-phases %standard-phases @@ -23629,7 +23143,7 @@ Complete support for Berkeley DB Base Replication. Support for RPC.") "0gdpwdzf1fngsi6jrdyj4qdf6cr7gnnr3zp80dpkzbgz0spskj07")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://dbfread.readthedocs.io") (synopsis "Read DBF Files with Python") (description @@ -23663,7 +23177,7 @@ one-off scripts.") " " m))) #t))))) (native-inputs - `(("python-freezegun" ,python-freezegun))) + (list python-freezegun)) (home-page "https://github.com/pydanny/cached-property") (synopsis @@ -23691,12 +23205,9 @@ time-or-computationally-expensive properties quick and easy and works in Python (base32 "1q05pzca3wfwgnbg03l3bagnhh348yx68w4aa91rg3g8zlviwjz1")))) (build-system python-build-system) (propagated-inputs - `(("python-branca" ,python-branca) - ("python-jinja2" ,python-jinja2) - ("python-numpy" ,python-numpy) - ("python-requests" ,python-requests))) + (list python-branca python-jinja2 python-numpy python-requests)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/python-visualization/folium") (synopsis "Make beautiful maps with Leaflet.js & Python") (description "@code{folium} makes it easy to visualize data that’s been @@ -23747,7 +23258,7 @@ for manual interpretation.") "1hpbydpn2alyswiajfbvhzq4c7f36vdmvxy91hgv8l1lb2g2vfrj")))) (build-system python-build-system) (propagated-inputs - `(("python-dateutil" ,python-dateutil))) + (list python-dateutil)) (home-page "https://github.com/MKuranowski/pyroutelib3") (synopsis "Library for simple routing on OSM data") (description "Library for simple routing on OSM data") @@ -23766,9 +23277,9 @@ for manual interpretation.") "0zwhfkrzf3n5847dbnfng92k7ak199l9v6x6ax3dgdidfpm6d2fz")))) (build-system python-build-system) (propagated-inputs - `(("python-pyparsing" ,python-pyparsing))) + (list python-pyparsing)) (native-inputs - `(("python-future" ,python-future))) + (list python-future)) (home-page "https://github.com/sciunto-org/python-bibtexparser") (synopsis "Python library to parse BibTeX files") (description "BibtexParser is a Python library to parse BibTeX files.") @@ -23777,17 +23288,17 @@ for manual interpretation.") (define-public python-distro (package (name "python-distro") - (version "1.4.0") + (version "1.6.0") (source (origin (method url-fetch) (uri (pypi-uri "distro" version)) (sha256 (base32 - "0mrg75w4ap7mdzyga75yaid9n8bgb345ih5mwjp3plj6v1jxwb9n")))) + "09441261dd3c8b2gv15vhw1cryzg60lmgpkk07v6hpwwkyhfbxc3")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/nir0s/distro") (synopsis "OS platform information API") @@ -23818,15 +23329,10 @@ information in various formats.") (replace 'check (lambda _ (invoke "pytest")))))) (propagated-inputs - `(("python-cairocffi" ,python-cairocffi) - ("python-cssselect2" ,python-cssselect2) - ("python-defusedxml" ,python-defusedxml) - ("python-pillow" ,python-pillow) - ("python-tinycss2" ,python-tinycss2))) + (list python-cairocffi python-cssselect2 python-defusedxml + python-pillow python-tinycss2)) (native-inputs - `(("python-pytest-flake8" ,python-pytest-flake8) - ("python-pytest-isort" ,python-pytest-isort) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-pytest-flake8 python-pytest-isort python-pytest-runner)) (home-page "https://cairosvg.org/") (synopsis "SVG to PDF/PS/PNG converter based on Cairo") (description "CairoSVG is a SVG converter based on Cairo. It can export @@ -23893,9 +23399,7 @@ converters and more, those based on the library itself.") (build-system python-build-system) (arguments '(#:tests? #f)) ;missing dependencies (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-docopt" ,python-docopt) - ("python-pyyaml" ,python-pyyaml))) + (list python-dateutil python-docopt python-pyyaml)) (home-page "https://github.com/grokzen/pykwalify") (synopsis "Python lib/cli for JSON/YAML schema validation") @@ -23907,31 +23411,34 @@ for YAML and JSON.") (define-public python-dbusmock (package (name "python-dbusmock") - (version "0.18.3") + (version "0.24.1") (source (origin (method url-fetch) (uri (pypi-uri "python-dbusmock" version)) (sha256 (base32 - "0hp2kyac88nh9iv6l8hlmv7s1sa1s5f1a3wc2pmlmmxnd211fjlr")))) + "0kvjwn5sdp3rqcbclvxljkmk988l12dvppzfn3ldy3jxbyyn1mjn")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases - (add-after 'unpack 'patch-shell-path - (lambda _ + (add-after 'unpack 'patch-paths + (lambda* (#:key inputs #:allow-other-keys) (substitute* "tests/test_code.py" (("/bin/bash") (which "bash"))) - #t))))) - (native-inputs - `(;; For tests. - ("dbus" ,dbus) ; for dbus-daemon - ("python-nose" ,python-nose) - ("which" ,which))) + (substitute* "dbusmock/testcase.py" + (("'dbus-daemon'") + (string-append "'" (assoc-ref inputs "dbus") + "/bin/dbus-daemon'")))))))) + (native-inputs + (list ;; For tests. + dbus ; for dbus-daemon + python-nose which)) + (inputs + (list dbus)) (propagated-inputs - `(("python-dbus" ,python-dbus) - ("python-pygobject" ,python-pygobject))) + (list python-dbus python-pygobject)) (home-page "https://github.com/martinpitt/python-dbusmock") (synopsis "Python library for mock D-Bus objects") (description "python-dbusmock allows for the easy creation of mock objects on @@ -23956,9 +23463,7 @@ services to what you expect in your tests.") ;; XXX: No tests on PyPI, and the repository has no tags. (arguments '(#:tests? #f)) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-simplejson" ,python-simplejson) - ("python-sortedcontainers" ,python-sortedcontainers))) + (list python-dateutil python-simplejson python-sortedcontainers)) (synopsis "Serialize Python types to/from JSON") (description "This package provides functionality to serialize arbitrary data types @@ -24000,9 +23505,7 @@ register custom encoders and decoders.") (add-installed-pythonpath inputs outputs) (invoke "pytest")))))) (native-inputs - `(("double-conversion" ,double-conversion) - ("python-setuptools-scm" ,python-setuptools-scm) - ("python-pytest" ,python-pytest))) + (list double-conversion python-setuptools-scm python-pytest)) (home-page "https://github.com/ultrajson/ultrajson") (synopsis "Ultra fast JSON encoder and decoder for Python") (description @@ -24038,10 +23541,7 @@ bindings for Python 3.") (invoke "py.test" "-v" "tests") #t))))) (propagated-inputs - `(("python-flexmock" ,python-flexmock) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-six" ,python-six))) + (list python-flexmock python-pytest python-pytest-cov python-six)) (home-page "https://github.com/oinume/iocapture") (synopsis "Python capturing tool for stdout and stderr") (description @@ -24109,20 +23609,18 @@ standard error channel (stderr) in your program.") " and not test_send_receive" " and not test_socket_options")))))))) (propagated-inputs - `(("python-idna" ,python-idna) - ("python-sniffio" ,python-sniffio) - ("python-typing-extensions" ,python-typing-extensions))) - (native-inputs - `(("python-coverage" ,python-coverage) - ("python-hypothesis" ,python-hypothesis) - ("python-iniconfig" ,python-iniconfig) - ("python-mock" ,python-mock) - ("python-pytest" ,python-pytest-6) - ("python-pytest-mock" ,python-pytest-mock) - ("python-pytest-trio" ,python-pytest-trio) - ("python-setuptools-scm" ,python-setuptools-scm) - ("python-trustme" ,python-trustme) - ("python-uvloop" ,python-uvloop))) + (list python-idna python-sniffio python-typing-extensions)) + (native-inputs + (list python-coverage + python-hypothesis + python-iniconfig + python-mock + python-pytest-6 + python-pytest-mock + python-pytest-trio + python-setuptools-scm + python-trustme + python-uvloop)) (home-page "https://github.com/agronholm/anyio") (synopsis "Compatibility layer for multiple asynchronous event loops") (description @@ -24152,11 +23650,8 @@ itself.") "1p5h3dnpbsjmqrvil96s71asc6i3gpinmbrabqmwnrsxprz7r3ns")))) (build-system python-build-system) (propagated-inputs - `(("python-iocapture" ,python-iocapture) - ("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-xdist" ,python-pytest-xdist))) + (list python-iocapture python-mock python-pytest python-pytest-cov + python-pytest-xdist)) (home-page "https://github.com/neithere/argh/") (synopsis "Argparse wrapper with natural syntax") (description @@ -24181,7 +23676,7 @@ including the native API of @code{python-argparse}.") (build-system python-build-system) (arguments '(#:tests? #f)) ; there are none (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://pypi.org/project/ppft/") (synopsis "Fork of Parallel Python") (description @@ -24216,8 +23711,7 @@ load balancing.") (invoke "py.test" "-vv") #t))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("which" ,which))) + (list python-pytest which)) (home-page "https://pypi.org/project/pox/") (synopsis "Python utilities for file system exploration and automated builds") (description @@ -24247,16 +23741,11 @@ essential tools are located.") (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" - (string-append (getcwd) ":" (getenv "PYTHONPATH"))) (invoke "python" "./tests/__main__.py")))))) (propagated-inputs - `(("python-dill" ,python-dill) - ("python-multiprocess" ,python-multiprocess) - ("python-pox" ,python-pox) - ("python-ppft" ,python-ppft))) + (list python-dill python-multiprocess python-pox python-ppft)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://pypi.org/project/pathos/") (synopsis "Parallel graph management and execution in heterogeneous computing") @@ -24271,7 +23760,7 @@ the syntactic logic to configure and launch jobs in an execution environment.") (define-public python-flit (package (name "python-flit") - (version "3.2.0") + (version "3.3.0") ;; We fetch the sources via git because on pypi the package is split into ;; two parts: flit and flit_core; flit_core cannot be built without flit. (source (origin @@ -24282,7 +23771,7 @@ the syntactic logic to configure and launch jobs in an execution environment.") (file-name (git-file-name name version)) (sha256 (base32 - "0fpqxpz5bv2xpv1akmc0c8yfss6sj09wdzxrlf3qw1lp1jhbzpyc")))) + "0mvyymw3zqsnip4x4ca6anr5rbx30hcmpqwrnhjwcm7s8mycd01x")))) (build-system python-build-system) (arguments `(#:phases @@ -24327,8 +23816,7 @@ the syntactic logic to configure and launch jobs in an execution environment.") (find-files "dist" "\\.whl$"))))))) #:tests? #f)) ; XXX: Check requires network access. (propagated-inputs - `(("python-pytoml" ,python-pytoml) - ("python-toml" ,python-toml))) + (list python-pytoml python-toml)) (native-inputs `(("python-docutils" ,python-docutils) ("python-responses" ,python-responses) @@ -24413,7 +23901,7 @@ scripts to load entry points more quickly.") (base32 "07f9cgjr3h4j2m67fhwapn8fja87vazl58zsj4yppf9y3an2x6dp")))) (native-inputs - `(("python-tox" ,python-tox))) + (list python-tox)) (arguments `(#:phases (modify-phases %standard-phases @@ -24444,7 +23932,7 @@ that take parsers as their arguments and return them as result values.") (arguments `(#:tests? #f)) ;FIXME: tests fail, not sure why (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (build-system python-build-system) (home-page "https://github.com/avakar/speg") (synopsis "PEG-based parser interpreter with memoization") @@ -24464,57 +23952,13 @@ memoization.") (base32 "00cyvigg4npbph39ghkg77xbxisa6plf75vii24igxfizik0337f")))) (build-system python-build-system) (propagated-inputs - `(("python-speg" ,python-speg))) + (list python-speg)) (home-page "https://github.com/avakar/pycson") (synopsis "Parser for Coffeescript Object Notation (CSON)") (description "This package is a parser for Coffeescript Object Notation (CSON).") (license license:expat))) -(define-public python-asynctest - (package - (name "python-asynctest") - (version "0.13.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "asynctest" version)) - (sha256 - (base32 - "1b3zsy7p84gag6q8ai2ylyrhx213qdk2h2zb6im3xn0m5n264y62")))) - (build-system python-build-system) - (arguments - '(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda _ - (invoke "python" "-X" "dev" "-m" "unittest" "-v" "test"))) - (add-after 'unpack 'disable-tests - (lambda* _ - ;; XXX: 7 tests fail out of 220. Disable them for now. - (substitute* (list "test/test_selector.py" - "test/test_mock.py") - (("def test_events_watched_outside_test_are_ignored") - "@unittest.skip('disabled by guix') - def test_events_watched_outside_test_are_ignored") - (("def test_awaited_from_autospec_mock.*" line) - (string-append line " return True\n")) - (("def test_create_autospec_on_coroutine_and_using_assert_methods.*" line) - (string-append line " return True\n")) - (("def test_patch_coroutine_with_multiple_scopes.*" line) - (string-append line " return True\n")) - (("def test_multiple_patches_on_coroutine.*" line) - (string-append line " return True\n")) - (("def test_patch_coroutine_only_when_running.*" line) - (string-append line " return True\n"))) - #t))))) - (home-page "https://github.com/Martiusweb/asynctest") - (synopsis "Extension of unittest for testing asyncio libraries") - (description - "The package asynctest is built on top of the standard unittest module -and cuts down boilerplate code when testing libraries for asyncio.") - (license license:asl2.0))) - (define-public python-aionotify (package (name "python-aionotify") @@ -24559,8 +24003,7 @@ and cuts down boilerplate code when testing libraries for asyncio.") (lambda _ (invoke "make" "SKIP_DEPS=1")))))) (native-inputs - `(("python-nose" ,python-nose) - ("python-coverage" ,python-coverage))) + (list python-nose python-coverage)) (home-page "https://github.com/clarete/forbiddenfruit") (synopsis "Patch python built-in objects") (description "This project allows Python code to extend built-in types.") @@ -24579,11 +24022,10 @@ and cuts down boilerplate code when testing libraries for asyncio.") "1lqp3jgfngyhaxjgj3n230hn90wsylwilh120yjf62h7b1s02mh8")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six) - ;; `which`, `kadmin.local` binaries called inside library - ("which" ,which) - ("mit-krb5" ,mit-krb5))) - (native-inputs `(("mit-krb5" ,mit-krb5))) + (list python-six + ;; `which`, `kadmin.local` binaries called inside library + which mit-krb5)) + (native-inputs (list mit-krb5)) (arguments '(#:phases (modify-phases %standard-phases @@ -24616,15 +24058,12 @@ tests.") "1j2idrbrbczykzlb56q1bn0ivc9c0rjjljpk4yz86xn3gxfkpv8n")))) (build-system python-build-system) (propagated-inputs - `(("python-decorator" ,python-decorator) - ("python-six" ,python-six))) + (list python-decorator python-six)) (inputs - `(("mit-krb5" ,mit-krb5))) + (list mit-krb5)) ;; for tests (native-inputs - `(("python-parameterized" ,python-parameterized) - ("python-k5test" ,python-k5test) - ("python-nose" ,python-nose))) + (list python-parameterized python-k5test python-nose)) (home-page "https://github.com/pythongssapi/python-gssapi") (synopsis "Python GSSAPI Wrapper") (description @@ -24646,8 +24085,7 @@ also be usable with other GSSAPI mechanisms.") "0lk45ifdv2cpkl6ayfyix7jwmnxa1rha7xvb0ih5999k115wzqs4")))) (build-system python-build-system) (native-inputs - `(("python-mock" ,python-mock) - ("git" ,git))) + (list python-mock git)) (home-page "https://github.com/mgedmin/check-manifest") (synopsis "Check MANIFEST.in in a Python source package for completeness") (description "Python package can include a MANIFEST.in file to help with @@ -24699,12 +24137,9 @@ files. These files are used to translate strings in android apps.") (delete-file "tests/test_snapshot_diff.py") #t))))) (propagated-inputs - `(("python-argh" ,python-argh) - ("python-pathtools" ,python-pathtools) - ("python-pyyaml" ,python-pyyaml))) + (list python-argh python-pathtools python-pyyaml)) (native-inputs - `(("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-timeout" ,python-pytest-timeout))) + (list python-pytest-cov python-pytest-timeout)) (home-page "https://github.com/gorakhargosh/watchdog") (synopsis "File system events monitoring") (description "This package provides a way to monitor file system events @@ -24715,7 +24150,7 @@ but portable.") (define-public python-watchgod (package (name "python-watchgod") - (version "0.6") + (version "0.7") (source (origin ;; There are no tests in the PyPI tarball. @@ -24725,7 +24160,7 @@ but portable.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1lqx44wkryakgpyqj3m0hsz61bqr07vc7smgzh188374hwvscp66")))) + (base32 "1w2xsidwp9n4giqhja0bzw7rwrh01db0kdxf2n54mv3dkx545jpq")))) (build-system python-build-system) (arguments `(#:phases @@ -24735,19 +24170,14 @@ but portable.") (when tests? (invoke "pytest" "-vv"))))))) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-docutils" ,python-docutils) - ("python-flake8" ,python-flake8) - ("python-isort" ,python-isort) - ("python-pycodestyle" ,python-pycodestyle) - ("python-pyflakes" ,python-pyflakes) - ("python-pygments" ,python-pygments) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-aiohttp" ,python-pytest-aiohttp) - ("python-pytest-mock" ,python-pytest-mock) - ("python-pytest-sugar" ,python-pytest-sugar) - ("python-pytest-toolbox" ,python-pytest-toolbox))) + (list python-coverage + python-pygments + python-pytest + python-pytest-asyncio + python-pytest-cov + python-pytest-mock + python-pytest-sugar + python-pytest-toolbox)) (home-page "https://github.com/samuelcolvin/watchgod") (synopsis "Simple, modern file watching and code reload in Python") (description @@ -24768,7 +24198,7 @@ operating systems and an elegant approach to concurrency using threading.") (base32 "0qb0y7ipby42m4m7h0ipazpdyc3bn9xi46lvifcwwl5albn31rim")))) (build-system python-build-system) - (native-inputs `(("unzip" ,unzip))) + (native-inputs (list unzip)) (home-page "https://bitbucket.org/techtonik/python-wget/") (synopsis "Pure Python download utility") (description "The python-wget library provides an API to download files @@ -24794,21 +24224,21 @@ with features similar to the @command{wget} utility.") ;; No tests `(#:tests? #f)) (propagated-inputs - `(("python-android-stringslib" ,python-android-stringslib) - ("python-dateutil" ,python-dateutil) - ("python-gitlab" ,python-gitlab) - ("python-lxml" ,python-lxml) - ("python-polib" ,python-polib) - ("python-pyenchant" ,python-pyenchant) - ("python-pygit2" ,python-pygit2) - ("python-pygithub" ,python-pygithub) - ("python-pyqt" ,python-pyqt) - ("python-requests" ,python-requests) - ("python-ruamel.yaml" ,python-ruamel.yaml) - ("python-translation-finder" ,python-translation-finder) - ("python-watchdog" ,python-watchdog))) - (native-inputs - `(("qttools" ,qttools))) + (list python-android-stringslib + python-dateutil + python-gitlab + python-lxml + python-polib + python-pyenchant + python-pygit2 + python-pygithub + python-pyqt + python-requests + python-ruamel.yaml + python-translation-finder + python-watchdog)) + (native-inputs + (list qttools)) (home-page "https://framagit.org/tyreunom/offlate") (synopsis "Offline translation interface for online translation tools") (description "Offlate offers a unified interface for different translation @@ -24832,7 +24262,7 @@ an upload option to send your work back to the platform.") "0486i99wf8ssa7sgn81fn6fv6i4rhhq6n751bc740b3hzfbpmpl4")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/ppannuto/python-titlecase") (synopsis "Capitalize strings similar to book titles") (description @@ -24884,11 +24314,9 @@ custom PNG processing.") "1s00zn75y2dkxgnbw8kl8dw4p1mc77cv78fwfa4yb0274s96w0a5")))) (build-system python-build-system) (native-inputs - `(("python-hypothesis" ,python-hypothesis) - ("python-pycodestyle" ,python-pycodestyle) - ("python-pytest" ,python-pytest))) + (list python-hypothesis python-pycodestyle python-pytest)) (propagated-inputs - `(("python-levenshtein" ,python-levenshtein))) + (list python-levenshtein)) (home-page "https://github.com/seatgeek/fuzzywuzzy") (synopsis "Fuzzy string matching in Python") (description "Approximate string matching using @@ -24933,8 +24361,7 @@ your process.") "0gyady7x3v3l9fm1zan0idaggqqcm31y7g5vxk7h05p5h7f39bjs")))) (build-system python-build-system) (propagated-inputs - `(("python-lxml" ,python-lxml) - ("python-jinja2" ,python-jinja2))) + (list python-lxml python-jinja2)) (home-page "https://gcovr.com/") (synopsis "Utility for generating code coverage results") (description @@ -24956,7 +24383,10 @@ Python.") (base32 "0v8vg0naa9rywvd31cpq65ljbdclpsrx09788v4xj7lg10np8nk0")))) (build-system python-build-system) (arguments - '(#:tests? #f)) ; TODO: package dependencies required for tests. + ;; TODO: package dependencies required for tests. + '(#:tests? #f + #:phases (modify-phases %standard-phases + (delete 'sanity-check)))) (synopsis "Interface for Open Geospatial Consortium web service") (description "OWSLib is a Python package for client programming with Open Geospatial @@ -24979,13 +24409,13 @@ content models.") ;; Testing requires undocumented setup changes, and so testing is disabled here. (arguments `(#:tests? #f)) (propagated-inputs - `(("python-certifi" ,python-certifi) - ("python-six" ,python-six) - ("python-dateutil" ,python-dateutil) - ("python-urllib3" ,python-urllib3) - ("python-pyjwt" ,python-pyjwt) - ("python-cryptography" ,python-cryptography) - ("python-nose" ,python-nose))) + (list python-certifi + python-six + python-dateutil + python-urllib3 + python-pyjwt + python-cryptography + python-nose)) (synopsis "DocuSign Python Client") (description "The Official DocuSign Python Client Library used to interact with the eSign REST API. Send, sign, and approve documents using this client.") @@ -25005,7 +24435,7 @@ content models.") "0i4xyiqbhjz2g16zbim17zjdbjkw79xsw8k59942vvq4is1cmfxh")))) (build-system python-build-system) (propagated-inputs - `(("python-cffi" ,python-cffi))) + (list python-cffi)) (home-page "https://github.com/xattr/xattr") (synopsis "Python wrapper for extended file system attributes") @@ -25048,12 +24478,9 @@ we can stop writing custom parsers for syslog-type records.") "1qmank3c217ddiig3xr8ps0mqaydcp0q5a62in9a9g4zf72zjnqd")))) (build-system python-build-system) (propagated-inputs - `(("python-json-logger" ,python-json-logger))) + (list python-json-logger)) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm) - ("python-six" ,python-six))) + (list python-mock python-pytest python-setuptools-scm python-six)) (home-page "https://github.com/jd/daiquiri") (synopsis "Library to configure Python logging easily") @@ -25081,20 +24508,17 @@ logging in Python. It also provides some custom formatters and handlers.") (invoke "python" "setup.py" "testr" "--slowest" "--testr-args=until-failure")))))) (propagated-inputs - `(("python-click" ,python-click) - ("python-daiquiri" ,python-daiquiri) - ("python-fixtures" ,python-fixtures) - ("python-jinja2" ,python-jinja2) - ("python-pbr" ,python-pbr) - ("python-psutil" ,python-psutil) - ("python-six" ,python-six) - ("python-xattr" ,python-xattr))) - (native-inputs - `(("python-mock" ,python-mock) - ("python-os-testr" ,python-os-testr) - ("python-requests" ,python-requests) - ("python-testrepository" ,python-testrepository) - ("python-testtools" ,python-testtools))) + (list python-click + python-daiquiri + python-fixtures + python-jinja2 + python-pbr + python-psutil + python-six + python-xattr)) + (native-inputs + (list python-mock python-os-testr python-requests + python-testrepository python-testtools)) (home-page "https://github.com/jd/pifpaf") (synopsis "Tools and fixtures to manage daemons for testing in Python") (description "Pifpaf is a suite of fixtures and a command-line tool that @@ -25117,14 +24541,14 @@ evolved from its precursor @code{overtest}.") "12x3wmrdzm6wgk0vz02hb769h68nr49q47w5q1pj95pc89hsa34v")))) (build-system python-build-system) (propagated-inputs - `(("python-docutils" ,python-docutils) - ("python-html5lib" ,python-html5lib) - ("python-nbconvert" ,python-nbconvert) - ("python-nbformat" ,python-nbformat) - ("python-pytest" ,python-pytest) - ("python-six" ,python-six))) + (list python-docutils + python-html5lib + python-nbconvert + python-nbformat + python-pytest + python-six)) (native-inputs - `(("python-pbr-minimal" ,python-pbr-minimal))) + (list python-pbr-minimal)) (home-page "https://github.com/minrk/pytest-check-links") (synopsis "Check links in files") (description "This package provides a pytest plugin that checks URLs for @@ -25249,9 +24673,7 @@ information for your operating system.") (base32 "0c86g0vvzdcg3nrcsqnbzlfhpprc2i894p8i14hska56yl27d6w9")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six) - ("python-frozendict" ,python-frozendict) - ("python-simplejson" ,python-simplejson))) + (list python-six python-frozendict python-simplejson)) (home-page "https://github.com/matrix-org/python-canonicaljson") (synopsis "Canonical JSON") (description @@ -25281,13 +24703,10 @@ information for your operating system.") (base32 "0280f8zyycsmd7iy65bs438flm7m8ffs1kcxfbvhi8hbazkqc19m")))) (build-system python-build-system) (propagated-inputs - `(("python-canonicaljson" ,python-canonicaljson) - ("python-importlib-metadata" ,python-importlib-metadata) - ("python-pynacl" ,python-pynacl) - ("python-typing-extensions" ,python-typing-extensions) - ("python-unpaddedbase64" ,python-unpaddedbase64))) + (list python-canonicaljson python-importlib-metadata python-pynacl + python-typing-extensions python-unpaddedbase64)) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) + (list python-setuptools-scm)) (home-page "https://github.com/matrix-org/python-signedjson") (synopsis "Sign JSON objects with ED25519 signatures") (description @@ -25331,8 +24750,7 @@ key. (base32 "1f0357a6g1h96sk6wy030xmc1p4rd80a999qvxd28v7nlm1blsqy")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six) - ("python-pynacl" ,python-pynacl))) + (list python-six python-pynacl)) (home-page "https://github.com/ecordell/pymacaroons") (synopsis "Python Macaroon Library") (description @@ -25369,10 +24787,9 @@ enforcement of that policy.") (invoke "nosetests" "-s" "test")) #t))))) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (propagated-inputs - `(("python-gssapi" ,python-gssapi) - ("python-pyasn1" ,python-pyasn1))) + (list python-gssapi python-pyasn1)) (synopsis "Python LDAP client") (description "LDAP3 is a strictly RFC 4510 conforming LDAP V3 pure Python client @@ -25447,23 +24864,21 @@ tbutils "_test_logCallsDefaultLoggerWrite")) #t))))) (propagated-inputs - `(("python-boltons" ,python-boltons) - ("python-pyrsistent" ,python-pyrsistent) - ("python-six" ,python-six) - ("python-zope-interface" ,python-zope-interface))) - (native-inputs - `(("python-black" ,python-black) - ("python-coverage" ,python-coverage) - ("python-dask" ,python-dask) - ("python-flake8" ,python-flake8) - ("python-hypothesis" ,python-hypothesis) - ("python-pytest" ,python-pytest) - ("python-setuptools" ,python-setuptools) - ("python-sphinx" ,python-sphinx) - ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme) - ("python-testtools" ,python-testtools) - ("python-twine" ,python-twine) - ("python-twisted" ,python-twisted))) + (list python-boltons python-pyrsistent python-six + python-zope-interface)) + (native-inputs + (list python-black + python-coverage + python-dask + python-flake8 + python-hypothesis + python-pytest + python-setuptools + python-sphinx + python-sphinx-rtd-theme + python-testtools + python-twine + python-twisted)) (home-page "https://github.com/itamarst/eliot/") (synopsis "Eliot: the logging system that tells you why it happened") (description @@ -25486,13 +24901,13 @@ happened, and what caused it.") "1xh88ss279fprxnzd10dczmqwjhppbyvljm33zrg2mgybwd66qr7")))) (build-system python-build-system) (native-inputs - `(("python-certifi" ,python-certifi) - ("python-coverage" ,python-coverage) - ("python-pretend" ,python-pretend) - ("python-pyopenssl" ,python-pyopenssl) - ("python-pytest" ,python-pytest) - ("python-sphinx" ,python-sphinx) - ("python-twisted" ,python-twisted))) + (list python-certifi + python-coverage + python-pretend + python-pyopenssl + python-pytest + python-sphinx + python-twisted)) (home-page "https://pem.readthedocs.io/") (synopsis "Easy PEM file parsing in Python") (description @@ -25518,9 +24933,7 @@ happened, and what caused it.") "0imfxx4yjj1lbq0n5ad45al3wvv4qv96sivnc1r51i66mxi658z8")))) (build-system python-build-system) (propagated-inputs - `(("python-pyopenssl" ,python-pyopenssl) - ("python-service-identity" ,python-service-identity) - ("python-twisted" ,python-twisted))) + (list python-pyopenssl python-service-identity python-twisted)) (synopsis "Run TLS servers with Twisted") (description "This package provides an easy-to-use SNI endpoint for use @@ -25539,23 +24952,22 @@ with the Twisted web framework.") (base32 "1cplx4llq7i508w6fgwjdv9di7rsz9k9irfmzdfbiz6q6a0ykf1d")))) (build-system python-build-system) (propagated-inputs - `(("python-acme" ,python-acme) - ("python-attrs" ,python-attrs) - ("python-eliot" ,python-eliot) - ("python-josepy" ,python-josepy) - ("python-pem" ,python-pem) - ("python-treq" ,python-treq) - ("python-twisted" ,python-twisted) - ("python-txsni" ,python-txsni))) - (native-inputs - `(("python-fixtures" ,python-fixtures) - ("python-hypothesis" ,python-hypothesis) - ("python-mock" ,python-mock) - ("python-service-identity" - ,python-service-identity) - ("python-testrepository" ,python-testrepository) - ("python-testscenarios" ,python-testscenarios) - ("python-testtools" ,python-testtools))) + (list python-acme + python-attrs + python-eliot + python-josepy + python-pem + python-treq + python-twisted + python-txsni)) + (native-inputs + (list python-fixtures + python-hypothesis + python-mock + python-service-identity + python-testrepository + python-testscenarios + python-testtools)) (home-page "https://github.com/twisted/txacme") (synopsis "Twisted implexmentation of the ACME protocol") (description @@ -25581,16 +24993,15 @@ networking engine for Python.") "1xk2x0slz1f8cqv7vn77qx99xfd1mshhswiwrljk9m72w2m9iivd")))) (build-system python-build-system) (propagated-inputs - `(("python-cryptography" ,python-cryptography) - ("python-dateutil" ,python-dateutil) - ("python-defusedxml" ,python-defusedxml) - ("python-importlib-resources" - ,python-importlib-resources) - ("python-pyopenssl" ,python-pyopenssl) - ("python-pytz" ,python-pytz) - ("python-requests" ,python-requests) - ("python-six" ,python-six) - ("python-xmlschema" ,python-xmlschema))) + (list python-cryptography + python-dateutil + python-defusedxml + python-importlib-resources + python-pyopenssl + python-pytz + python-requests + python-six + python-xmlschema)) (home-page "https://idpy.org") (synopsis "Python implementation of SAML Version 2 Standard") (description @@ -25614,9 +25025,9 @@ there are extensions that allow you to use it with other frameworks.") (base32 "0jr6bxj67vg988vkm6nz8jj98v9lg46bn49lkhak3n598jbrkas6")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-click" ,python-click))) + (list python-click)) (synopsis "Extension for Click to register external CLI commands") (description "This package provides n extension module for Click to register external CLI commands via setuptools entry-points.") @@ -25636,9 +25047,7 @@ register external CLI commands via setuptools entry-points.") "0klb0ysybzlh2wihvir82hgq62v0jjmlcqklwajyms7c0p529yby")))) (build-system python-build-system) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-coverage python-pytest python-pytest-runner)) (home-page "https://github.com/ulif/diceware/") (synopsis "Generates memorable passphrases") (description "This package generates passphrases by concatenating words @@ -25659,18 +25068,18 @@ cryptographically signed ones).") "1lk3qmy1hkaphk4n7ayfk0wl6m2yvd6r7qkam6yncqfzgkbc1phs")))) (build-system python-build-system) (native-inputs - `(("python-check-manifest" ,python-check-manifest) - ("python-coverage" ,python-coverage) - ("python-isort" ,python-isort) - ("python-mock" ,python-mock) - ("python-pydoctstyle" ,python-pydocstyle) - ("python-pytest-cache" ,python-pytest-cache) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-pep8" ,python-pytest-pep8) - ("python-pytest-runner" ,python-pytest-runner) - ("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm) - ("python-tox" ,python-tox))) + (list python-check-manifest + python-coverage + python-isort + python-mock + python-pydocstyle + python-pytest-cache + python-pytest-cov + python-pytest-pep8 + python-pytest-runner + python-pytest + python-setuptools-scm + python-tox)) (home-page "https://github.com/inveniosoftware/dictdiffer") (synopsis "Diff and patch Python dictionary objects") (description @@ -25700,7 +25109,7 @@ dictionaries.") ;; symbol: objc_getClass". #:tests? #f)) (propagated-inputs - `(("python-pyqt" ,python-pyqt))) + (list python-pyqt)) (home-page "https://pyzo.org") (synopsis "Python IDE for scientific computing") @@ -25748,7 +25157,7 @@ Open Sound Control 1.0} specification.") "0mplkcpb5d8wjf8vk195fys4y6a3wbibiyf708imw33lphfk9g1a")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/alecthomas/voluptuous") (synopsis "Python data validation library") (description @@ -25769,27 +25178,24 @@ intended for validating data coming into Python as JSON, YAML, etc.") "1f18plbc9yyvhn0js3d2bii9yld8zfl775gxsaw9jza5pmlg9ss2")))) (build-system python-build-system) (propagated-inputs - `(("python-attrs" ,python-attrs) - ("python-colorama" ,python-colorama) - ("python-pyperclip" ,python-pyperclip) - ("python-wcwidth" ,python-wcwidth))) - (native-inputs - `(("python-codecov" ,python-codecov) - ("python-coverage" ,python-coverage) - ("python-doc8" ,python-doc8) - ("python-flake8" ,python-flake8) - ("python-invoke" ,python-invoke) - ("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-mock" ,python-pytest-mock) - ("python-setuptools-scm" ,python-setuptools-scm) - ("python-sphinx" ,python-sphinx) - ("python-sphinx-autobuild" ,python-sphinx-autobuild) - ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme) - ("python-tox" ,python-tox) - ("python-twine" ,python-twine) - ("which" ,which))) + (list python-attrs python-colorama python-pyperclip python-wcwidth)) + (native-inputs + (list python-codecov + python-coverage + python-doc8 + python-flake8 + python-invoke + python-mock + python-pytest + python-pytest-cov + python-pytest-mock + python-setuptools-scm + python-sphinx + python-sphinx-autobuild + python-sphinx-rtd-theme + python-tox + python-twine + which)) (home-page "https://github.com/python-cmd2/cmd2") (synopsis "Tool for building interactive command line applications") (description @@ -25818,13 +25224,12 @@ be necessary when using @code{cmd}.") (modify-phases %standard-phases (add-before 'build 'qualify-libtidy (lambda* (#:key inputs #:allow-other-keys) - (let ((libtidy (string-append (assoc-ref inputs "tidy") - "/lib/libtidy.so"))) + (let ((libtidy (search-input-file inputs "/lib/libtidy.so"))) (substitute* "tidylib/tidy.py" (("ctypes\\.util\\.find_library\\('tidy'\\)") (format #f "'~a'" libtidy))) #t)))))) - (inputs `(("tidy" ,tidy))) + (inputs (list tidy)) (home-page "https://github.com/countergram/pytidylib") (synopsis "Python wrapper for HTML Tidy library") (description @@ -25912,7 +25317,7 @@ For the most part it's transliterated from C, the major differences are: #t)))) #:tests? #f)) ; _curses.error: setupterm: could not find terminal (native-inputs - `(("ncurses" ,ncurses))) + (list ncurses)) (home-page "https://github.com/Rockhopper-Technologies/jinxed") (synopsis "Jinxed Terminal Library") (description @@ -25932,7 +25337,7 @@ For the most part it's transliterated from C, the major differences are: "0lz0w2ajdvwd269a7ppnzawmx8px0116j0nx8xvhlihxrd28zx4y")))) (build-system python-build-system) (propagated-inputs - `(("python-lxml" ,python-lxml))) + (list python-lxml)) (home-page "https://svgutils.readthedocs.io") (synopsis "Python SVG editor") (description "This is an utility package that helps with editing and @@ -25959,12 +25364,9 @@ placement and scaling of SVG figures and adding markers, such as labels.") (delete-file "blessed/win_terminal.py") #t)))) (build-system python-build-system) (propagated-inputs - `(("python-jinxed" ,python-jinxed) - ("python-six" ,python-six) - ("python-wcwidth" ,python-wcwidth))) + (list python-jinxed python-six python-wcwidth)) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (home-page "https://github.com/jquast/blessed") (synopsis "Wrapper around terminal capabilities") (description @@ -25985,13 +25387,9 @@ positioning, and keyboard input.") "13fnrv7z3y0yfafzcjbl55cqxncvbxadr72ql4l29pgyvrqxpsfb")))) (build-system python-build-system) (propagated-inputs - `(("python-bleach" ,python-bleach) - ("python-docutils" ,python-docutils) - ("python-pygments" ,python-pygments) - ("python-six" ,python-six))) + (list python-bleach python-docutils python-pygments python-six)) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + (list python-mock python-pytest)) (home-page "https://github.com/pypa/readme_renderer") (synopsis "Render README files in Warehouse") (description @@ -26020,9 +25418,9 @@ and plain text.") (lambda _ (invoke "python" "setup.py" "nosetests")))))) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (propagated-inputs - `(("python-zope-interface" ,python-zope-interface))) + (list python-zope-interface)) (home-page "https://launchpad.net/lazr.delegates") (synopsis "Easily write objects that delegate behavior") (description @@ -26051,10 +25449,9 @@ and delegating behavior.") (lambda _ (invoke "python" "-s" "-m" "nose" "-P" "lazr")))))) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (propagated-inputs - `(("python-lazr-delegates" ,python-lazr-delegates) - ("python-zope-interface" ,python-zope-interface))) + (list python-lazr-delegates python-zope-interface)) (home-page "https://launchpad.net/lazr.config") (synopsis "Create configuration schemas and process and validate configurations") (description @@ -26079,10 +25476,9 @@ validation.") "01lg1b0jpf8605mzaz9miq3nray6s7a7gc8n4wzg5nsxl8fglcp4")))) (build-system python-build-system) (propagated-inputs - `(("python-atpublic" ,python-atpublic) - ("python-zope-interface" ,python-zope-interface))) + (list python-atpublic python-zope-interface)) (native-inputs - `(("python-nose2" ,python-nose2))) + (list python-nose2)) (home-page "https://fluflbounce.readthedocs.io/en/latest/") (synopsis "Email bounce detectors") (description "The @code{flufl.bounce} library provides a set of heuristics @@ -26105,7 +25501,7 @@ RFC 3464.") "1flwpn1xhgc957zj3zxw92dhdjh0lsy0hdvzq32dzqpsajfsvq1r")))) (build-system python-build-system) (propagated-inputs - `(("python-atpublic" ,python-atpublic))) + (list python-atpublic)) (home-page "https://flufli18n.readthedocs.io") (synopsis "API for Python internationalization") (description @@ -26131,8 +25527,7 @@ different tasks.") "055941zyma3wfx25jhm8wcsghpv3jc3iwi1gdrdjhzcnfhn62lxq")))) (build-system python-build-system) (propagated-inputs - `(("python-atpublic" ,python-atpublic) - ("python-psutil" ,python-psutil))) + (list python-atpublic python-psutil)) (home-page "https://flufllock.readthedocs.io") (synopsis "NFS-safe file locking with timeouts for POSIX systems") (description @@ -26156,7 +25551,7 @@ and have a maximum lifetime built-in.") "1nkm95mhcfhl4x5jgs6y97ikszaxsfh07nyawsih6cxxm6l62641")))) (build-system python-build-system) (native-inputs - `(("python-nose2" ,python-nose2))) + (list python-nose2)) (home-page "https://gitlab.com/warsaw/flufl.testing") (synopsis "Collection of test tool plugins") (description @@ -26179,10 +25574,9 @@ and have a maximum lifetime built-in.") (base32 "15zczdcm90wl54c68f1qjb05nkd5bjsc9xjl3lk4frs7k7wkmrvp")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-mock" ,python-pytest-mock))) + (list python-pytest python-pytest-mock)) (propagated-inputs - `(("python-pygments" ,python-pygments))) + (list python-pygments)) (arguments `(#:phases (modify-phases %standard-phases (replace 'check @@ -26209,15 +25603,10 @@ It adds a simple and readable way to print stuff during development.") "1ypbyqxlk7n6zibk90js3ybz37xmin3kk0i35g8c51bwqpcfyxg8")))) (build-system python-build-system) (propagated-inputs - `(("python-dateutil" ,python-dateutil) - ("python-pytz" ,python-pytz) - ("python-regex" ,python-regex) - ("python-ruamel.yaml" ,python-ruamel.yaml) - ("python-tzlocal" ,python-tzlocal))) + (list python-dateutil python-pytz python-regex python-ruamel.yaml + python-tzlocal)) (native-inputs - `(("python-mock" ,python-mock) - ("python-parameterized" ,python-parameterized) - ("tzdata" ,tzdata-for-tests))) + (list python-mock python-parameterized tzdata-for-tests)) (arguments `(;; TODO: Of 23320 tests, 6 fail and 53 error. #:tests? #f @@ -26227,9 +25616,8 @@ It adds a simple and readable way to print stuff during development.") (lambda* (#:key inputs #:allow-other-keys) (setenv "TZ" "UTC") (setenv "TZDIR" - (string-append (assoc-ref inputs "tzdata") - "/share/zoneinfo")) - #t))))) + (search-input-directory inputs + "share/zoneinfo"))))))) (home-page "https://github.com/scrapinghub/dateparser") (synopsis "Date parsing library designed to parse dates from HTML pages") @@ -26251,11 +25639,9 @@ dates in almost any string formats commonly found on web pages.") "0rzkg3nymsbwdjc0ms2bsajkda02jipwyp3xk97qj71f21lz3dd1")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-packaging" ,python-packaging) - ("python-pyyaml" ,python-pyyaml) - ("python-toml" ,python-toml))) + (list python-packaging python-pyyaml python-toml)) (home-page "https://github.com/pyupio/dparse") (synopsis "Parser for Python dependency files") (description "This package provides a parser for Python dependency files.") @@ -26274,9 +25660,7 @@ dates in almost any string formats commonly found on web pages.") "1ymi9ssk7i0mx3mviplf4csfvzibdd6wyj4qzj6s487n9xgnp85y")))) (build-system python-build-system) (native-inputs - `(("python-hypothesis" ,python-hypothesis) - ("python-mock" ,python-mock) - ("python-nose" ,python-nose))) + (list python-hypothesis python-mock python-nose)) (arguments '(#:phases (modify-phases %standard-phases @@ -26319,10 +25703,7 @@ facility for filtering those results.") (("def test_check_live") "def _test_check_live")) #t))))) (propagated-inputs - `(("python-click" ,python-click) - ("python-dparse" ,python-dparse) - ("python-packaging" ,python-packaging) - ("python-requests" ,python-requests))) + (list python-click python-dparse python-packaging python-requests)) (home-page "https://github.com/pyupio/safety") (synopsis "Check installed dependencies for known vulnerabilities") (description "Safety checks installed dependencies for known vulnerabilities. @@ -26342,15 +25723,15 @@ By default it uses the open Python vulnerability database Safety DB.") "149basv4pvzg9zm74cjz68x8s2n5fykyj7prgysb0qfmja73r83f")))) (build-system python-build-system) (inputs - `(("pandoc" ,pandoc))) + (list pandoc)) (propagated-inputs `(("wheel" ,python-wheel))) (native-inputs - `(("texlive" ,(texlive-union (list texlive-amsfonts/patched + `(("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts texlive-fonts-ec - texlive-iftex - texlive-latex-hyperref - texlive-latex-oberdiek + texlive-generic-iftex + texlive-hyperref + texlive-oberdiek texlive-lm texlive-xcolor))))) (arguments @@ -26362,8 +25743,6 @@ By default it uses the open Python vulnerability database Safety DB.") (substitute* "tests.py" (("test_basic_conversion_from_http_url") "skip_test_basic_conversion_from_http_url")) - ;; Needed by texlive-union to generate fonts - (setenv "HOME" "/tmp") #t))))) (home-page "https://github.com/bebraw/pypandoc") (synopsis "Python wrapper for pandoc") @@ -26384,7 +25763,7 @@ and pandoc-citeproc.") "1kmp3iwxxyzjsd47j2sprd47ihhkwhb3yydih3af5bbfq0ibh1w8")))) (build-system python-build-system) (propagated-inputs - `(("python-rply" ,python-rply))) + (list python-rply)) (arguments `(#:phases (modify-phases %standard-phases (replace 'check @@ -26421,12 +25800,9 @@ equivalent schemata in the XML-based default RELAX NG syntax.") (invoke "py.test" "-v")) #t))))) (propagated-inputs - `(("python-rsa" ,python-rsa) - ("python-pyaes" ,python-pyaes))) + (list python-rsa python-pyaes)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-asyncio" ,python-pytest-asyncio) - ("python-pytest-trio" ,python-pytest-trio))) + (list python-pytest python-pytest-asyncio python-pytest-trio)) (home-page "https://docs.telethon.dev") (synopsis "Full-featured Telegram client library for Python 3") (description "This library is designed to make it easy to write Python @@ -26446,8 +25822,7 @@ programs that can interact with Telegram.") "00aaff50jy4j0nakdzq9258z1gzrac9baarli2ymgspj88jg5968")))) (build-system python-build-system) (propagated-inputs - `(("python-lxml" ,python-lxml) - ("python-rnc2rng" ,python-rnc2rng))) + (list python-lxml python-rnc2rng)) (home-page "https://github.com/brechtm/citeproc-py") (synopsis "Citations and bibliography formatter") @@ -26473,12 +25848,9 @@ are plain text, reStructuredText and HTML.") (arguments `(#:tests? #f)) ; PyPI tarball lacks tests (native-inputs - `(("python-hypothesis" ,python-hypothesis) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-hypothesis python-pytest-cov python-pytest-runner)) (propagated-inputs - `(("python-arrow" ,python-arrow) - ("python-six" ,python-six))) + (list python-arrow python-six)) (home-page "https://inform.readthedocs.io") (synopsis "Print & logging utilities for communicating with user") (description @@ -26502,7 +25874,7 @@ cleanly print different types of messages.") (arguments `(#:tests? #f)) ; PyPI tarball lacks tests (propagated-inputs - `(("python-inform" ,python-inform))) + (list python-inform)) (home-page "https://nestedtext.org") (synopsis "Human readable and writable data interchange format") (description @@ -26563,9 +25935,7 @@ module patches @code{asyncio} to allow nested use of @code{asyncio.run} and (invoke "pytest" "--maxfail" "3" "--verbose")) #t))))) (native-inputs - `(("python-aiohttp" ,python-aiohttp) - ("python-pytest" ,python-pytest) - ("python-pytest-asyncio" ,python-pytest-asyncio))) + (list python-aiohttp python-pytest python-pytest-asyncio)) (home-page "https://github.com/yuvipanda/simpervisor") (synopsis "Simple async process supervisor") (description @@ -26586,7 +25956,7 @@ module patches @code{asyncio} to allow nested use of @code{asyncio.run} and (base32 "1mzk4yabxj6r149fswhis18hd8dnag5sj8i4wb06450zq3pi8dh7")))) (native-inputs - `(("unzip" ,unzip))) + (list unzip)) (build-system python-build-system) (arguments '(#:tests? #f)) ; No test suite. (home-page "https://www.parallelpython.com") @@ -26614,12 +25984,9 @@ applications with variable CPU loads).") (base32 "089smpq29ll0z37lnq26r2f72d31i33xm9fw9pc6hlcsm6nbjbiv")))) (build-system python-build-system) (native-inputs - `(("ghostscript" ,ghostscript) - ("pkg-config" ,pkg-config) - ("python-nose" ,python-nose))) + (list ghostscript pkg-config python-nose)) (inputs - `(("djvulibre" ,djvulibre) - ("python-cython" ,python-cython))) + (list djvulibre python-cython)) (arguments `(#:phases (modify-phases %standard-phases @@ -26681,12 +26048,16 @@ process.") "src/zlib-1.2.8")))))) (build-system python-build-system) (inputs - `(("libpng" ,libpng) - ("libtiff" ,libtiff) - ("python2-wxpython" ,python2-wxpython) - ("zlib" ,zlib))) + (list libpng libtiff zlib)) (arguments - `(#:python ,python-2)) + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'disable-wx-support + (lambda _ + (substitute* "setup.py" + (("no_wx = False") + "no_wx = True"))))))) (synopsis "Framework for building document analysis applications") (description "Gamera is a toolkit for building document image recognition systems.") @@ -26706,7 +26077,7 @@ process.") "17n3w8c20kgkgc6khaafdhhlcdj4bzman4paxqsl7harma59137k")))) (build-system python-build-system) (propagated-inputs - `(("python-immutables" ,python-immutables))) + (list python-immutables)) (home-page "https://github.com/MagicStack/contextvars") (synopsis "PEP 567 Backport") @@ -26745,9 +26116,7 @@ disk files in asyncio applications.") "0c5cbbqrfyjwakdh3kbwxis6mbrbwky1z1fqslgszgpcj4g43q30")))) (build-system python-build-system) (propagated-inputs - `(("python-typing-extensions" - ,python-typing-extensions) - ("python-typing-inspect" ,python-typing-inspect))) + (list python-typing-extensions python-typing-inspect)) (home-page "https://pyre-check.org") (synopsis "Type system extensions for use with @code{python-pyre}") @@ -26820,9 +26189,9 @@ query Watchman to discover file changes.") (invoke "pytest" "tests")) #t))))) (propagated-inputs - `(("python-importlib-metadata" ,python-importlib-metadata))) + (list python-importlib-metadata)) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://gitlab.com/dpizetta/helpdev") (synopsis "Extract information about the Python environment easily") @@ -26864,10 +26233,9 @@ older versions of Python and so are packaged here.") "1d2j64wgbggzv5rhvil10zndp2w78wa5np5w0psj122ws9qr9wsa")))) (build-system python-build-system) (native-inputs - `(("python-mock" ,python-mock))) + (list python-mock)) (propagated-inputs - `(("python-logutils" ,python-logutils) - ("python-pyyaml" ,python-pyyaml))) + (list python-logutils python-pyyaml)) (home-page "https://github.com/gmr/helper") (synopsis "Library for writing configurable applications and daemons") (description @@ -26900,11 +26268,9 @@ applications and daemons.") (for-each make-file-writable (find-files ".")) #t))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-pytest python-pytest-cov python-pytest-runner)) (propagated-inputs - `(("python-libsass" ,python-libsass))) + (list python-libsass)) (home-page "https://github.com/spyder-ide/qtsass") (synopsis "Compile SCSS files to valid Qt stylesheets") (description @@ -26933,8 +26299,7 @@ handling those variations.") ;; added as native-inputs. #:tests? #f)) (propagated-inputs - `(("python-helpdev" ,python-helpdev) - ("python-qtpy" ,python-qtpy))) + (list python-helpdev python-qtpy)) (home-page "https://github.com/ColinDuquesnoy/QDarkStyleSheet") (synopsis @@ -26966,7 +26331,7 @@ Qt applications.") (invoke "pytest"))) #t))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (home-page "https://github.com/scott-griffiths/bitstring") (synopsis "Simple construction, analysis and modification of binary data") @@ -26988,7 +26353,7 @@ Qt applications.") "0bh2kyj8wd7h9gg4nsvrbykl5ly0f70f0wi3fbm204b1f0fcmywj")))) (build-system python-build-system) (propagated-inputs - `(("python-pyyaml" ,python-pyyaml))) + (list python-pyyaml)) (home-page "https://github.com/beetbox/confuse") (synopsis "Painless YAML configuration") (description "Confuse is a configuration library for Python that uses @@ -27011,10 +26376,9 @@ integration, human-readable errors, and standard OS-specific locations.") (arguments `(#:tests? #false)) ; almost all tests want to run mkfs.btrfs (propagated-inputs - `(("python-cffi" ,python-cffi))) + (list python-cffi)) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) + (list python-pytest python-pytest-runner)) (home-page "https://gitlab.com/rubdos/pyreflink") (synopsis "Python wrapper around reflink system call") (description @@ -27049,16 +26413,15 @@ implementations.") "${Coin_INCLUDE_DIR};${SoQt_INCLUDE_DIRS}")) #t))))) (native-inputs - `(("cmake" ,cmake) - ("swig" ,swig))) + (list cmake swig)) (inputs - `(("python-wrapper" ,python-wrapper) - ("qtbase" ,qtbase-5) - ("libxi" ,libxi) - ("libice" ,libice) - ("soqt" ,soqt) - ("glew" ,glew) - ("coin3D" ,coin3D-4))) + (list python-wrapper + qtbase-5 + libxi + libice + soqt + glew + coin3D-4)) (home-page "https://github.com/coin3d/pivy") (synopsis "Python bindings to Coin3D") (description @@ -27079,7 +26442,7 @@ Application Programming Interface based on the Open Inventor 2.1 API.") "0gw106k4b6y8mw7pp52awxyplj2bwvwk315k4sywzwh0g1abfcxx")))) (build-system python-build-system) (propagated-inputs - `(("python-colorama" ,python-colorama))) + (list python-colorama)) (home-page "https://github.com/MasterOdin/crayons") (synopsis "TextUI colors for Python") (description "This package gives you colored strings for the terminal. @@ -27100,9 +26463,9 @@ restores the original state after the string is printed.") "1pi597z94n2mkd821ln52fq0g727n2jxfskf280ip3kf7jw8w294")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (inputs - `(("sane-backends" ,sane-backends))) + (list sane-backends)) (home-page "https://github.com/python-pillow/Sane") (synopsis "Python interface to the SANE scanner") (description "This package provides Python interface to the SANE scanner @@ -27144,25 +26507,25 @@ and frame grabber interface.") (lambda* (#:key outputs #:allow-other-keys) (wrap-program (string-append (assoc-ref outputs "out") "/bin/screenkey") - `("PYTHONPATH" ":" prefix (,(getenv "PYTHONPATH"))) + `("GUIX_PYTHONPATH" ":" prefix (,(getenv "GUIX_PYTHONPATH"))) `("GI_TYPELIB_PATH" - ":" prefix (,(getenv "GI_TYPELIB_PATH")))) - #t))))) + ":" prefix (,(getenv "GI_TYPELIB_PATH"))))))))) (inputs - `(("python-distutils-extra" ,python-distutils-extra) - ("python-tokenize-rt" ,python-tokenize-rt) - ("libx11" ,libx11) - ("libxtst" ,libxtst) - ("gtk+" ,gtk+) - ("python-pygobject" ,python-pygobject) - ("python-pycairo" ,python-pycairo) - ("python-setuptools-git" ,python-setuptools-git) - ("python-babel" ,python-babel))) + (list python-distutils-extra + python-tokenize-rt + libx11 + libxtst + gtk+ + python-pygobject + python-pycairo + python-setuptools-git + python-babel)) (home-page "https://www.thregr.org/~wavexx/software/screenkey/") (synopsis "Screencast tool to display pressed keys") (description - "A screencast tool to display your keys inspired by Screenflick.") + "Screenkey is a screencast tool to display your keys inspired by +Screenflick.") (license license:gpl3+))) (define-public python-jinja2-cli @@ -27178,11 +26541,9 @@ and frame grabber interface.") "0vikx7v6fbvww6kfrv0k5a24jyv3ak7nindg60906pdd1m9qvkcw")))) (build-system python-build-system) (propagated-inputs - `(("python-jinja2" ,python-jinja2))) + (list python-jinja2)) (native-inputs - `(("python-flake8" ,python-flake8) - ("python-jinja2" ,python-jinja2) - ("python-pytest" ,python-pytest))) + (list python-flake8 python-jinja2 python-pytest)) (home-page "https://github.com/mattrobenolt/jinja2-cli") (synopsis "Command-line interface to Jinja2") (description @@ -27260,9 +26621,7 @@ iGoogle subscription lists.") (invoke "nosetests" "-v" "--exclude=^load_tests$")))))) (native-inputs ;; For tests. - `(("python-docutils" ,python-docutils) - ("python-nose" ,python-nose) - ("python-pygments" ,python-pygments))) + (list python-docutils python-nose python-pygments)) (home-page "https://github.com/leohemsted/smartypants.py") (synopsis "Translate punctuation characters into smart quotes") (description @@ -27294,10 +26653,10 @@ entities (lambda _ (invoke "nosetests" "-v")))))) (propagated-inputs - `(("python-smartypants" ,python-smartypants))) + (list python-smartypants)) (native-inputs ;; For tests. - `(("python-nose" ,python-nose))) + (list python-nose)) (home-page "https://github.com/mintchaos/typogrify") (synopsis "Filters to transform text into typographically-improved HTML") (description @@ -27320,7 +26679,7 @@ Django template systems, the filters can be used in any environment.") "1k4ydp5rgkv4985v459kcl06i1igjm1ywvh2vkbi9ck1zyyri1z5")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six))) + (list python-six)) (home-page "https://github.com/nir0s/ld") (synopsis "OS platform information API") (description @@ -27359,8 +26718,7 @@ runs on, such as a reliable machine-readable ID, or version information.") (invoke "pytest")) #t))))) (native-inputs - `(("python-cython" ,python-cython) - ("python-pytest" ,python-pytest))) + (list python-cython python-pytest)) (home-page "https://github.com/scoder/quicktions") (synopsis "Fast fractions data type for rational numbers") (description @@ -27385,10 +26743,7 @@ is the cythonized version of @code{fractions.Fraction}.") ;; pathvalidate tests depend on pytest-md-report, which ;; depends on pathvalidate. (native-inputs - `(("python-allpairspy" ,python-allpairspy) - ("python-click" ,python-click) - ("python-faker" ,python-faker) - ("python-pytest" ,python-pytest))) + (list python-allpairspy python-click python-faker python-pytest)) (home-page "https://github.com/thombashi/pathvalidate") (synopsis "Sanitize strings representing paths") (description @@ -27429,9 +26784,7 @@ result.") "0rvdd2ikdr0yg6cx6594fdzn53cmdc0g0i6qsbcdq8i2kxjdpd5x")))) (build-system python-build-system) (propagated-inputs - `(("python-commonmark" ,python-commonmark) - ("python-docutils" ,python-docutils) - ("python-sphinx" ,python-sphinx))) + (list python-commonmark python-docutils python-sphinx)) (arguments '(#:phases (modify-phases %standard-phases (add-after 'unpack 'delete-test-sphinx @@ -27458,7 +26811,7 @@ lets you write CommonMark inside of Docutils & Sphinx projects.") "091sph52c4yk1jlm5w8xidxpzbia9r7s42bnb23q4m4b56ihmzyj")))) (build-system python-build-system) (propagated-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (home-page "https://github.com/materialsvirtuallab/pyhull") (synopsis "Python wrapper to Qhull") (description @@ -27525,11 +26878,9 @@ and BMI2).") (when tests? (invoke "python" "setup.py" "nosetests"))))))) (native-inputs - `(("python-nose" ,python-nose) - ("python-rednose" ,python-rednose))) + (list python-nose python-rednose)) (propagated-inputs - `(("python-six" ,python-six) - ("python-opcodes" ,python-opcodes))) + (list python-six python-opcodes)) (synopsis "Efficient assembly code generation in Python") (description "PeachPy is a Python framework for writing high-performance assembly kernels. @@ -27542,6 +26893,53 @@ application binary interfaces (ABIs); it takes care of register allocation; it supports x86_64 instructions up to AVX-512 and SHA.") (license license:bsd-2)))) +(define-public python-sgmllib3k + (let ((commit "799964676f35349ca2dd04503e34c2b3ad522c0d") + (revision "1")) + (package + (name "python-sgmllib3k") + (version + (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/hsoft/sgmllib") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0bzf6pv85dzfxfysm6zbj8m40hp0xzr9h8qlk4hp3nmy88rznqvr")))) + (build-system python-build-system) + (home-page "https://github.com/hsoft/sgmllib") + (synopsis "Python 3 port of sgmllib") + (description "This packages provides an unmaintained port of sgmllib to +Python 3. It is used to parse text files formatted in @acronym{SGML,Standard +Generalized Mark-up Language}.") + (license license:bsd-3)))) + +(define-public python-cwcwidth + (package + (name "python-cwcwidth") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cwcwidth" version)) + (sha256 + (base32 + "1azrphpkcyggg38xvkfb9dpc4xmmm90p02kf8dkqd4d6j5w96aj8")))) + (build-system python-build-system) + (native-inputs + (list python-cython python-pytest python-setuptools-scm python-toml + python-wheel)) + (home-page + "https://github.com/sebastinas/cwcwidth") + (synopsis "Python bindings for wc(s)width") + (description "This package provides bindings for wcwidth and wcswidth +functions defined in POSIX.1-2001 and POSIX.1-2008.") + (license license:expat))) + (define-public python-pyan3 (package (name "python-pyan3") @@ -27567,15 +26965,13 @@ supports x86_64 instructions up to AVX-512 and SHA.") (lambda* (#:key tests? #:allow-other-keys) (when tests? ;; Extend PYTHONPATH so the built package will be found. - (setenv "PYTHONPATH" - (string-append (getcwd) ":" (getenv "PYTHONPATH"))) + (setenv "GUIX_PYTHONPATH" + (string-append (getcwd) ":" (getenv "GUIX_PYTHONPATH"))) (invoke "pytest"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-wheel" ,python-wheel))) + (list python-pytest python-pytest-cov python-wheel)) (propagated-inputs - `(("python-jinja2" ,python-jinja2))) + (list python-jinja2)) (home-page "https://github.com/Technologicat/pyan") (synopsis "Offline call graph generator for Python 3") (description "Pyan takes one or more Python source files, performs @@ -27596,7 +26992,7 @@ graph can be output for rendering by GraphViz or yEd.") (base32 "1slblghfjg9fdi9zpd7gmrkvfbv20nrdgnrymcnbky8bzm8i9ax7")))) (build-system python-build-system) - (propagated-inputs `(("python-six" ,python-six))) + (propagated-inputs (list python-six)) (home-page "https://github.com/mrocklin/multipledispatch/") (synopsis "Multiple dispatch for Python based on pattern matching") (description "This library provides an efficient mechanism for overloading @@ -27616,8 +27012,7 @@ function implementations based on the types of the arguments.") "0j57953hi7kg2rl0163vzjzsvzdyjimnklhx6idf5vaqqf1d3p1j")))) (build-system python-build-system) (propagated-inputs - `(("python-multipledispatch" ,python-multipledispatch) - ("python-toolz" ,python-toolz))) + (list python-multipledispatch python-toolz)) (home-page "https://github.com/pythological/unification/") (synopsis "Logical unification in Python for solving symbolic expressions") (description "This library provides algorithms and data types for solving @@ -27637,10 +27032,9 @@ symbolic expressions in pure Python using the technique of logical unification." "0w9giq196wps7mbm47c4shdzs5yvwvqajqzkim2p92i51sm5qgvm")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest-6) - ("python-toml" ,python-toml))) + (list python-pytest-6 python-toml)) (propagated-inputs - `(("python-logical-unification" ,python-logical-unification))) + (list python-logical-unification)) (home-page "https://github.com/pythological/python-cons") (synopsis "Cons cell data structures and related algorithms for Python") (description @@ -27661,8 +27055,7 @@ cons cells in Python.") "0jhfyp177v37rl0i7wqfx7q6s5qkz027hl283d1x8d0vm3w0zqc8")))) (build-system python-build-system) (propagated-inputs - `(("python-cons" ,python-cons) - ("python-multipledispatch" ,python-multipledispatch))) + (list python-cons python-multipledispatch)) (home-page "https://github.com/pythological/etuples") (synopsis "S-expressions in Python") (description @@ -27691,22 +27084,19 @@ cons cells in Python.") (invoke "python" "-m" "pytest" "-v" "tests/" "kanren/")) #t))))) (native-inputs - `(("python-coveralls" ,python-coveralls) - ("python-pydocstyle" ,python-pydocstyle) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pylint" ,python-pylint) - ("python-black" ,python-black) - ("python-sympy" ,python-sympy) - ("python-versioneer" ,python-versioneer) - ("python-coverage" ,python-coverage) - ("python-pre-commit" ,python-pre-commit))) - (propagated-inputs - `(("python-toolz" ,python-toolz) - ("python-cons" ,python-cons) - ("python-multipledispatch" ,python-multipledispatch) - ("python-etuples" ,python-etuples) - ("python-logical-unification" ,python-logical-unification))) + (list python-coveralls + python-pydocstyle + python-pytest + python-pytest-cov + python-pylint + python-black + python-sympy + python-versioneer + python-coverage + python-pre-commit)) + (propagated-inputs + (list python-toolz python-cons python-multipledispatch + python-etuples python-logical-unification)) (home-page "https://github.com/pythological/kanren") (synopsis "Relational logic programming in pure Python") (description @@ -27738,11 +27128,9 @@ systems in Python.") (delete-file "tests/test_ipython.py") (invoke "python" "-m" "pytest"))))))) (propagated-inputs - `(("python-click" ,python-click))) + (list python-click)) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest) - ("python-sh" ,python-sh))) + (list python-mock python-pytest python-sh)) (home-page "https://github.com/theskumar/python-dotenv") (synopsis "Setup environment variables according to .env files") (description @@ -27810,7 +27198,7 @@ YYYY-MM-DD at the beginning of the file or directory name.") (base32 "19kli85q18p80nsn8fm4ql6axpr7bllfqg5chv2ywhr8zr8bssll")))) (build-system python-build-system) (propagated-inputs - `(("python-requests" ,python-requests))) + (list python-requests)) (home-page "https://developers.braintreepayments.com/python/sdk/server/overview") (synopsis "Braintree Python Library") @@ -27853,23 +27241,21 @@ pythonic way.") (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? - (setenv "PYTHONPATH" + (setenv "GUIX_PYTHONPATH" (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) + (getenv "GUIX_PYTHONPATH"))) (invoke "pytest"))))))) (native-inputs - `(("python-pandas" ,python-pandas) ;; required for test-suite - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-setuptools-scm" ,python-setuptools-scm))) - (propagated-inputs - `(("python-markuppy" ,python-markuppy) - ("python-odfpy" ,python-odfpy) - ("python-openpyxl" ,python-openpyxl) - ("python-pyyaml" ,python-pyyaml) - ("python-tabulate" ,python-tabulate) - ("python-xlrd" ,python-xlrd) - ("python-xlwt" ,python-xlwt))) + (list python-pandas ;; required for test-suite + python-pytest python-pytest-cov python-setuptools-scm)) + (propagated-inputs + (list python-markuppy + python-odfpy + python-openpyxl + python-pyyaml + python-tabulate + python-xlrd + python-xlwt)) (home-page "https://tablib.readthedocs.io") (synopsis "Format agnostic tabular data library") (description "@code{tablib} is a format-agnostic tabular dataset library, @@ -27894,11 +27280,9 @@ install @code{python-pandas}.") (base32 "0r0csl9npncnkfafg3rg6xr38d1qr0sxvq7wn7mg9bq41hvvh1si")))) (build-system python-build-system) (native-inputs - `(("python-lxml" ,python-lxml))) + (list python-lxml)) (propagated-inputs - `(("python-pycountry" ,python-pycountry) - ("python-pyyaml" ,python-pyyaml) - ("python-tablib" ,python-tablib))) + (list python-pycountry python-pyyaml python-tablib)) (home-page "https://bitbucket.org/wmj/csb43") (synopsis "Tools for converting from the Spanish banks' format CSB norm 43 (CSB43)") @@ -27946,11 +27330,9 @@ account (CODA) files as defined be the Belgian Febelfin bank standard.") (when tests? (invoke "nosetests" "-v"))))))) (native-inputs - `(("python-nose" ,python-nose))) + (list python-nose)) (propagated-inputs - `(("python-beautifulsoup4" ,python-beautifulsoup4) - ("python-lxml" ,python-lxml) - ("python-six" ,python-six))) + (list python-beautifulsoup4 python-lxml python-six)) (home-page "http://sites.google.com/site/ofxparse") (synopsis "Tools for working with the OFX (Open Financial Exchange) file format") @@ -27975,7 +27357,7 @@ statements in OFX files.") (arguments '(#:tests? #f)) ;; tests require network (propagated-inputs - `(("python-requests" ,python-requests))) + (list python-requests)) (home-page "https://github.com/stripe/stripe-python") (synopsis "Python bindings for the Stripe financial services' API") (description "This package provides access to the Stripe financial @@ -27996,10 +27378,8 @@ compatible with a wide range of versions of the Stripe API.") (base32 "07hq5qrp7pqj63iczg01wbf5ii6f0ncd0dq5mzkdhsslmg9slbb3")))) (build-system python-build-system) (native-inputs - `(("python-appdirs" ,python-appdirs) - ("python-pytest" ,python-pytest) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-mock" ,python-pytest-mock))) + (list python-appdirs python-pytest python-pytest-cov + python-pytest-mock)) (home-page "https://github.com/platformdirs/platformdirs") (synopsis "Determine the appropriate platform-specific directories") (description "When writing applications, finding the right location to @@ -28059,9 +27439,9 @@ into a human readable HTML table representation.") (add-installed-pythonpath inputs outputs) (invoke "pytest" "-v"))))))) (native-inputs - `(("python-pytest" ,python-pytest))) + (list python-pytest)) (propagated-inputs - `(("python-boltons" ,python-boltons))) + (list python-boltons)) (home-page "https://github.com/mahmoud/face") (synopsis "CLI parsing and dispatching microframework") (description "@code{python-face} is a Pythonic microframework for building @@ -28100,12 +27480,9 @@ command-line applications. ":" (getenv "PATH"))) (invoke "pytest" "-v"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-pyyaml" ,python-pyyaml))) + (list python-pytest python-pyyaml)) (propagated-inputs - `(("python-attrs" ,python-attrs) - ("python-boltons" ,python-boltons) - ("python-face" ,python-face))) + (list python-attrs python-boltons python-face)) (home-page "https://github.com/mahmoud/glom") (synopsis "Declaratively restructure data") (description "Real applications have real data, and real data @@ -28133,9 +27510,7 @@ and powerful way to handle real-world data, featuring: "0jhrdif57khx2hsw1q6a9x42knwcvq8ijgqyq1jmll6y6ifyzm2f")))) (build-system python-build-system) (propagated-inputs - `(("python-msgpack" ,python-msgpack) - ("python-ruamel.yaml" ,python-ruamel.yaml) - ("python-toml" ,python-toml))) + (list python-msgpack python-ruamel.yaml python-toml)) (home-page "https://github.com/cdgriffith/Box") (synopsis "Advanced Python dictionaries with dot notation access") (description @@ -28170,7 +27545,7 @@ It implements advanced Python dictionaries with dot notation access.") (sha256 (base32 "1am4ycf292zbmgz791z393v63w7qrynf8q5p9db2wwf2qj1fqxfj")))) (build-system python-build-system) - (propagated-inputs `(("python-fields" ,python-fields))) + (propagated-inputs (list python-fields)) (home-page "https://github.com/ionelmc/python-aspectlib") (synopsis "Python monkey-patching and decorators") @@ -28205,9 +27580,9 @@ simple mock/record and a complete capture/replay framework.") (inputs ;; libyajl is optional, but compiling with it makes faster ;; backends available to ijson: - `(("libyajl", libyajl))) + (list libyajl)) (native-inputs - `(("python-pytest", python-pytest))) + (list python-pytest)) (build-system python-build-system) (home-page "https://github.com/ICRAR/ijson") (synopsis "Iterative JSON parser with Python iterator interfaces") @@ -28235,38 +27610,13 @@ interfaces.") (when tests? (invoke "pytest" "-vv" "orgparse/tests"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-setuptools-scm" ,python-setuptools-scm))) + (list python-pytest python-setuptools-scm)) (home-page "https://github.com/karlicoss/orgparse") (synopsis "Emacs Org mode parser in Python") (description "This package is a Python module for reading Emacs Org mode files.") (license license:bsd-3))) -(define-public python-sgmllib3k - (package - (name "python-sgmllib3k") - (version "1.0.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "sgmllib3k" version)) - (sha256 - (base32 "1s8jm3dgqabgf8x96931scji679qkhvczlv3qld4qxpsicfgns3q")))) - (build-system python-build-system) - ;; Requires a test.html input that is not supplied - (arguments - `(#:tests? #f)) - (home-page "https://pypi.org/project/sgmllib3k/") - ;; Actual homepage seems to be down - ;; (home-page "https://hg.hardcoded.net/sgmllib") - (synopsis "Python 3 port of sgmllib") - (description - "This package provides an unmaintained port of sgmllib to Python 3. -It is used to parse text files formatted in @acronym{SGML,Standard Generalized -Mark-up Language}.") - (license license:bsd-3))) - (define-public dynaconf (package (name "dynaconf") @@ -28305,17 +27655,11 @@ Mark-up Language}.") (delete-file "tests/test_vault.py") (invoke "make" "test_only"))))))) (propagated-inputs - `(("python-click" ,python-click) - ("python-configobj" ,python-configobj) - ("python-dotenv" ,python-dotenv-0.13.0) - ("python-ruamel.yaml" ,python-ruamel.yaml) - ("python-toml" ,python-toml))) + (list python-click python-configobj python-dotenv-0.13.0 + python-ruamel.yaml python-toml)) (native-inputs - `(("python-django" ,python-django) - ("python-flask" ,python-flask) - ("python-pytest" ,python-pytest-6) - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-mock" ,python-pytest-mock))) + (list python-django python-flask python-pytest-6 python-pytest-cov + python-pytest-mock)) (home-page "https://www.dynaconf.com/") (synopsis "The dynamic configurator for your Python project") (description @@ -28361,14 +27705,9 @@ development, testing, production]}; (add-installed-pythonpath inputs outputs) (invoke "pytest"))))))) (native-inputs - `(("python-numpy" ,python-numpy) - ("python-pytest" ,python-pytest) - ("python-pytest-mock" ,python-pytest-mock))) + (list python-numpy python-pytest python-pytest-mock)) (propagated-inputs - `(("python-jedi" ,python-jedi) - ("python-pygments" ,python-pygments) - ("python-urwid" ,python-urwid) - ("python-urwid-readline" ,python-urwid-readline))) + (list python-jedi python-pygments python-urwid python-urwid-readline)) (home-page "https://documen.tician.de/pudb/") (synopsis "Console-based Python debugger") (description @@ -28389,8 +27728,8 @@ keyboard-friendly package.") (base32 "18bd35wn7zclalpqbry42pf7bjrdggxkkw58mc0k1vkhg9czc1d8")))) (build-system python-build-system) (inputs - `(("wireless-tools" ,wireless-tools))) - (propagated-inputs `(("python-cffi" ,python-cffi))) + (list wireless-tools)) + (propagated-inputs (list python-cffi)) (home-page "https://github.com/nhoad/python-iwlib") (synopsis "Python module to interface with iwlib") (description |