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Diffstat (limited to 'gnu/packages/python-science.scm')
| -rw-r--r-- | gnu/packages/python-science.scm | 102 |
1 files changed, 102 insertions, 0 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index d2c4caac3a..6fce8d2319 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2021 Greg Hogan <code@greghogan.com> ;;; Copyright © 2021 Roel Janssen <roel@gnu.org> ;;; Copyright © 2021 Paul Garlick <pgarlick@tourbillion-technology.com> +;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -36,6 +37,7 @@ #:use-module (gnu packages check) #:use-module (gnu packages gcc) #:use-module (gnu packages image-processing) + #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) #:use-module (gnu packages perl) @@ -47,6 +49,7 @@ #:use-module (gnu packages python-xyz) #:use-module (gnu packages simulation) #:use-module (gnu packages sphinx) + #:use-module (gnu packages statistics) #:use-module (gnu packages time) #:use-module (gnu packages xdisorg) #:use-module (gnu packages xml) @@ -733,3 +736,102 @@ dependencies.") license:silofl1.1 license:cc0 license:public-domain)))) + +(define-public python-pandas-flavor + (package + (name "python-pandas-flavor") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pandas_flavor" version)) + (sha256 + (base32 + "12g4av8gpl6l83yza3h97j3f2jblqv69frlidrvdq8ny2rc6awbq")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pandas" ,python-pandas) + ("python-xarray" ,python-xarray))) + (home-page "https://github.com/Zsailer/pandas_flavor") + (synopsis "Write your own flavor of Pandas") + (description "Pandas 0.23 added a simple API for registering accessors +with Pandas objects. Pandas-flavor extends Pandas' extension API by + +@itemize +@item adding support for registering methods as well +@item making each of these functions backwards compatible with older versions +of Pandas +@end itemize") + (license license:expat))) + +(define-public python-pingouin + (package + (name "python-pingouin") + (version "0.3.12") + (source + ;; The PyPI tarball does not contain the tests. + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/raphaelvallat/pingouin") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1ap29x54kdr19vi8qxj9g6cz2r1q4f0z7dcf6g77zwav7hf7r61a")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; On loading, Pingouin uses the outdated package to check if a newer + ;; version is available on PyPI. This check adds an extra dependency + ;; and is irrelevant to Guix users. So, disable it. + (add-after 'unpack 'remove-outdated-check + (lambda _ + (substitute* "setup.py" + (("'outdated',") "")) + (substitute* "pingouin/__init__.py" + (("^from outdated[^\n]*") "") + (("^warn_if_outdated[^\n]*") "")))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov))) + (propagated-inputs + `(("python-matplotlib" ,python-matplotlib) + ("python-mpmath" ,python-mpmath) + ("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ("python-pandas-flavor" ,python-pandas-flavor) + ("python-scikit-learn" ,python-scikit-learn) + ("python-scipy" ,python-scipy) + ("python-seaborn" ,python-seaborn) + ("python-statsmodels" ,python-statsmodels) + ("python-tabulate" ,python-tabulate))) + (home-page "https://pingouin-stats.org/") + (synopsis "Statistical package for Python") + (description "Pingouin is a statistical package written in Python 3 and +based mostly on Pandas and NumPy. Its features include + +@itemize +@item ANOVAs: N-ways, repeated measures, mixed, ancova +@item Pairwise post-hocs tests (parametric and non-parametric) and pairwise +correlations +@item Robust, partial, distance and repeated measures correlations +@item Linear/logistic regression and mediation analysis +@item Bayes Factors +@item Multivariate tests +@item Reliability and consistency +@item Effect sizes and power analysis +@item Parametric/bootstrapped confidence intervals around an effect size or a +correlation coefficient +@item Circular statistics +@item Chi-squared tests +@item Plotting: Bland-Altman plot, Q-Q plot, paired plot, robust correlation, +and more +@end itemize") + (license license:gpl3))) + |