diff options
Diffstat (limited to 'gnu/packages/python-science.scm')
| -rw-r--r-- | gnu/packages/python-science.scm | 86 |
1 files changed, 86 insertions, 0 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 79ee7c8bb2..39f52f1d64 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -11,6 +11,8 @@ ;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2020, 2021 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2021 Greg Hogan <code@greghogan.com> +;;; Copyright © 2021 Roel Janssen <roel@gnu.org> +;;; Copyright © 2021 Paul Garlick <pgarlick@tourbillion-technology.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -33,13 +35,17 @@ #:use-module (gnu packages base) #:use-module (gnu packages check) #:use-module (gnu packages gcc) + #:use-module (gnu packages image-processing) #:use-module (gnu packages maths) + #:use-module (gnu packages mpi) #:use-module (gnu packages perl) + #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) + #:use-module (gnu packages simulation) #:use-module (gnu packages sphinx) #:use-module (gnu packages time) #:use-module (gnu packages xdisorg) @@ -47,6 +53,7 @@ #:use-module (gnu packages xorg) #:use-module (guix packages) #:use-module (guix download) + #:use-module (guix git-download) #:use-module (guix utils) #:use-module (guix build-system python)) @@ -439,6 +446,27 @@ doing practical, real world data analysis in Python.") "if 'NULL byte' in msg or 'line contains NUL' in msg:")) #t))))))) +(define-public python-pyflow + (package + (name "python-pyflow") + (version "1.1.20") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/Illumina/pyflow/releases/download/v" + version "/pyflow-" version ".tar.gz")) + (sha256 + (base32 + "1bvfvviw58cndyn862qnv9nj3d9cd3a0dm4vc4sd9vwq8a6z1riv")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; There is no test suite. + (home-page "https://illumina.github.io/pyflow/") + (synopsis "Tool to manage tasks in a task dependency graph") + (description "This package is a Python module to manage tasks in the +context of a task dependency graph. It has some similarities to make.") + (license license:bsd-2))) + (define-public python-bottleneck (package (name "python-bottleneck") @@ -617,3 +645,61 @@ annotations on an existing boxplots and barplots generated by seaborn.") UpSet plots are used to visualize set overlaps; like Venn diagrams but more readable.") (license license:bsd-3))) + +(define-public python-vedo + (package + (name "python-vedo") + (version "2021.0.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/marcomusy/vedo") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "18i3ajh5jzhpc86di15lwh4jv97jhm627ii877sa4yhv6abzjfpn")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'build 'mpi-setup + ,%openmpi-setup) + (replace 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (setenv "HOME" (getcwd)) + (add-installed-pythonpath inputs outputs) + (with-directory-excursion "tests" + (for-each (lambda (dir) + (with-directory-excursion dir + (invoke "./run_all.sh"))) + '("common" "dolfin"))) + #t))))) + (inputs ; for the check phase + `(("dolfin" ,fenics) + ("pkgconfig" ,python-pkgconfig) + ("matplotlib" ,python-matplotlib))) + (native-inputs ; for python-pkgconfig + `(("pkg-config" ,pkg-config))) + (propagated-inputs + `(("numpy" ,python-numpy) + ("vtk" ,vtk))) + (home-page "https://github.com/marcomusy/vedo") + (synopsis + "Analysis and visualization of 3D objects and point clouds") + (description + "@code{vedo} is a fast and lightweight python module for +scientific analysis and visualization. The package provides a wide +range of functionalities for working with three-dimensional meshes and +point clouds. It can also be used to generate high quality +two-dimensional renderings such as scatter plots and histograms. +@code{vedo} is based on @code{vtk} and @code{numpy}, with no other +dependencies.") + ;; vedo is released under the Expat license. Included fonts are + ;; covered by the OFL license and textures by the CC0 license. + ;; The earth images are in the public domain. + (license (list license:expat + license:silofl1.1 + license:cc0 + license:public-domain)))) |