diff options
Diffstat (limited to 'gnu/packages/patches')
33 files changed, 799 insertions, 615 deletions
diff --git a/gnu/packages/patches/aspell-default-dict-dir.patch b/gnu/packages/patches/aspell-default-dict-dir.patch index 17a6ff606f..5f759a66d9 100644 --- a/gnu/packages/patches/aspell-default-dict-dir.patch +++ b/gnu/packages/patches/aspell-default-dict-dir.patch @@ -8,12 +8,34 @@ However it is necessary for applications that use libaspell since --- a/common/config.cpp +++ b/common/config.cpp +@@ -651,7 +651,20 @@ namespace acommon { + } else { // sep == '|' + assert(replace[0] == '$'); + const char * env = getenv(replace.c_str()+1); +- final_str += env ? env : second; ++ if (env) { ++ final_str += env; ++ } else if (second[0] == '$') { ++ // Expand the right-hand side of '|', which starts with a ++ // reference to an environment variable. ++ auto slash = second.find('/'); ++ String variable = second.substr(1, slash - 1); ++ const char * env = getenv(variable.c_str()); ++ String value = env ? String(env) : ""; ++ value += second.substr(slash, second.size() - slash); ++ final_str += value; ++ } else { ++ final_str += second; ++ } + } + replace = ""; + in_replace = false; @@ -1349,6 +1349,9 @@ namespace acommon { # define REPL ".aspell.<lang>.prepl" #endif +#undef DICT_DIR -+#define DICT_DIR "<$ASPELL_DICT_DIR|home-dir/.guix-profile/lib/aspell>" ++#define DICT_DIR "<$ASPELL_DICT_DIR|$HOME/.guix-profile/lib/aspell>" + static const KeyInfo config_keys[] = { // the description should be under 50 chars diff --git a/gnu/packages/patches/aspell-gcc-compat.patch b/gnu/packages/patches/aspell-gcc-compat.patch deleted file mode 100644 index 94c44f8fb6..0000000000 --- a/gnu/packages/patches/aspell-gcc-compat.patch +++ /dev/null @@ -1,31 +0,0 @@ -Fix GCC7 warnings. - -Taken from upstream: -https://git.savannah.gnu.org/cgit/aspell.git/commit/?id=8089fa02122fed0a6394eba14bbedcb1d18e2384 - -diff --git a/modules/filter/tex.cpp b/modules/filter/tex.cpp -index a979539..19ab63c 100644 ---- a/modules/filter/tex.cpp -+++ b/modules/filter/tex.cpp -@@ -174,7 +174,7 @@ namespace { - - if (c == '{') { - -- if (top.in_what == Parm || top.in_what == Opt || top.do_check == '\0') -+ if (top.in_what == Parm || top.in_what == Opt || *top.do_check == '\0') - push_command(Parm); - - top.in_what = Parm; -diff --git a/prog/check_funs.cpp b/prog/check_funs.cpp -index db54f3d..89ee09d 100644 ---- a/prog/check_funs.cpp -+++ b/prog/check_funs.cpp -@@ -647,7 +647,7 @@ static void print_truncate(FILE * out, const char * word, int width) { - } - } - if (i == width-1) { -- if (word == '\0') -+ if (*word == '\0') - put(out,' '); - else if (word[len] == '\0') - put(out, word, len); diff --git a/gnu/packages/patches/bash-linux-pgrp-pipe.patch b/gnu/packages/patches/bash-linux-pgrp-pipe.patch new file mode 100644 index 0000000000..234a55e897 --- /dev/null +++ b/gnu/packages/patches/bash-linux-pgrp-pipe.patch @@ -0,0 +1,32 @@ +Unconditionally enable PGRP_PIPE on Linux (the kernel), regardless of +the kernel version in use on the build machine. + +--- configure.ac.orig 2019-01-02 09:38:44.000000000 -0500 ++++ configure.ac 2019-08-15 16:40:24.271758379 -0400 +@@ -1108,10 +1108,7 @@ + solaris2*) LOCAL_CFLAGS=-DSOLARIS ;; + lynxos*) LOCAL_CFLAGS=-DRECYCLES_PIDS ;; + linux*) LOCAL_LDFLAGS=-rdynamic # allow dynamic loading +- case "`uname -r`" in +- 1.*|2.[[0123]]*) : ;; +- *) AC_DEFINE(PGRP_PIPE) ;; +- esac ;; ++ AC_DEFINE(PGRP_PIPE) ;; + netbsd*|openbsd*) LOCAL_CFLAGS="-DDEV_FD_STAT_BROKEN" ;; + *qnx[[67]]*) LOCAL_LIBS="-lncurses" ;; + *qnx*) LOCAL_CFLAGS="-Dqnx -F -3s" LOCAL_LDFLAGS="-3s" LOCAL_LIBS="-lunix -lncurses" ;; +--- configure.orig 2019-01-02 09:43:04.000000000 -0500 ++++ configure 2019-08-15 16:41:44.440155912 -0400 +@@ -16312,11 +16312,7 @@ + solaris2*) LOCAL_CFLAGS=-DSOLARIS ;; + lynxos*) LOCAL_CFLAGS=-DRECYCLES_PIDS ;; + linux*) LOCAL_LDFLAGS=-rdynamic # allow dynamic loading +- case "`uname -r`" in +- 1.*|2.[0123]*) : ;; +- *) $as_echo "#define PGRP_PIPE 1" >>confdefs.h +- ;; +- esac ;; ++ $as_echo "#define PGRP_PIPE 1" >>confdefs.h ;; + netbsd*|openbsd*) LOCAL_CFLAGS="-DDEV_FD_STAT_BROKEN" ;; + *qnx[67]*) LOCAL_LIBS="-lncurses" ;; + *qnx*) LOCAL_CFLAGS="-Dqnx -F -3s" LOCAL_LDFLAGS="-3s" LOCAL_LIBS="-lunix -lncurses" ;; diff --git a/gnu/packages/patches/bc-fix-cross-compilation.patch b/gnu/packages/patches/bc-fix-cross-compilation.patch new file mode 100644 index 0000000000..14dfecdbde --- /dev/null +++ b/gnu/packages/patches/bc-fix-cross-compilation.patch @@ -0,0 +1,171 @@ +Patch taken from nix. + +commit fdda59736ddc048cf38a2c7103f4f5d9eeaf995e +Author: Ben Gamari <ben@smart-cactus.org> +Date: Tue Oct 17 10:51:34 2017 -0400 + + Try implementing cross-compilation + +diff --git a/bc/Makefile.am b/bc/Makefile.am +index d9d412e..fdef633 100644 +--- a/bc/Makefile.am ++++ b/bc/Makefile.am +@@ -17,6 +17,7 @@ MAINTAINERCLEANFILES = Makefile.in bc.c bc.h scan.c \ + + AM_CPPFLAGS = -I$(srcdir) -I$(srcdir)/../h + LIBBC = ../lib/libbc.a ++LIBBC_HOST = ../lib/libbc_host.a + LIBL = @LEXLIB@ + LDADD = $(LIBBC) $(LIBL) @READLINELIB@ + +@@ -29,12 +30,20 @@ $(PROGRAMS): libmath.h $(LIBBC) + scan.o: bc.h + global.o: libmath.h ++ ++main_host.c : main.c ++ cp $< $@ + +-fbcOBJ = main.o bc.o scan.o execute.o load.o storage.o util.o warranty.o ++fbcOBJ = $(addsuffix _host,main.o bc.o scan.o execute.o load.o storage.o util.o warranty.o) ++ ++%.o_host : CC:=$(CC_FOR_BUILD) ++ ++%.o_host : %.c ++ $(COMPILE) -c $(CFLAGS) $(INCLUDES) -o $@ $< + +-libmath.h: libmath.b $(fbcOBJ) $(LIBBC) ++libmath.h: libmath.b $(fbcOBJ) $(LIBBC_HOST) + echo '{0}' > libmath.h +- $(MAKE) global.o +- $(LINK) -o fbc $(fbcOBJ) global.o $(LIBBC) $(LIBL) $(READLINELIB) $(LIBS) ++ $(MAKE) global.o_host ++ $(CC_FOR_BUILD) -o fbc $(fbcOBJ) global.o_host $(LIBBC_HOST) $(LIBL) ${READLINELIB} $(LIBS) + ./fbc -c $(srcdir)/libmath.b </dev/null >libmath.h + $(srcdir)/fix-libmath_h + rm -f ./fbc ./global.o +diff --git a/configure.ac b/configure.ac +index fc74573..5cabb73 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -20,6 +20,7 @@ m4_define([dc_version], 1.4.1) + + AC_INIT([bc],[bc_version]) + AC_CONFIG_SRCDIR(doc/bc.1) ++AC_CONFIG_MACRO_DIR([m4]) + AM_INIT_AUTOMAKE([dist-bzip2]) + AC_CONFIG_HEADERS(config.h) + +@@ -35,6 +36,7 @@ AC_DEFINE([DC_COPYRIGHT], + [Define the dc copyright line.]) + + AC_PROG_CC ++AX_CC_FOR_BUILD + AC_USE_SYSTEM_EXTENSIONS + + AM_PROG_LEX +diff --git a/lib/Makefile.am b/lib/Makefile.am +index ec4bf59..c670f5b 100644 +--- a/lib/Makefile.am ++++ b/lib/Makefile.am +@@ -1,5 +1,5 @@ + ## Process this file with automake to produce Makefile.in +-noinst_LIBRARIES = libbc.a ++noinst_LIBRARIES = libbc.a libbc_host.a + + AM_CPPFLAGS = -I. -I.. -I$(srcdir)/../h + +@@ -24,3 +24,11 @@ testmul: testmul.o number.o + + specialnumber: newnumber.o + cp newnumber.o number.o ++ ++%.o_host : CC:=$(CC_FOR_BUILD) ++%.o_host : %.c ++ $(COMPILE) -c $(CFLAGS) $(INCLUDES) -o $@ $< ++ ++libbc_host.a : $(addsuffix _host,$(libbc_a_OBJECTS)) ++ ar cru $@ $+ ++ ranlib $@ +diff --git a/m4/cc_for_build.m4 b/m4/cc_for_build.m4 +new file mode 100644 +index 0000000..c62ffad +--- /dev/null ++++ b/m4/cc_for_build.m4 +@@ -0,0 +1,77 @@ ++# =========================================================================== ++# https://www.gnu.org/software/autoconf-archive/ax_cc_for_build.html ++# =========================================================================== ++# ++# SYNOPSIS ++# ++# AX_CC_FOR_BUILD ++# ++# DESCRIPTION ++# ++# Find a build-time compiler. Sets CC_FOR_BUILD and EXEEXT_FOR_BUILD. ++# ++# LICENSE ++# ++# Copyright (c) 2010 Reuben Thomas <rrt@sc3d.org> ++# Copyright (c) 1999 Richard Henderson <rth@redhat.com> ++# ++# This program is free software: you can redistribute it and/or modify it ++# under the terms of the GNU General Public License as published by the ++# Free Software Foundation, either version 3 of the License, or (at your ++# option) any later version. ++# ++# This program is distributed in the hope that it will be useful, but ++# WITHOUT ANY WARRANTY; without even the implied warranty of ++# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General ++# Public License for more details. ++# ++# You should have received a copy of the GNU General Public License along ++# with this program. If not, see <https://www.gnu.org/licenses/>. ++# ++# As a special exception, the respective Autoconf Macro's copyright owner ++# gives unlimited permission to copy, distribute and modify the configure ++# scripts that are the output of Autoconf when processing the Macro. You ++# need not follow the terms of the GNU General Public License when using ++# or distributing such scripts, even though portions of the text of the ++# Macro appear in them. The GNU General Public License (GPL) does govern ++# all other use of the material that constitutes the Autoconf Macro. ++# ++# This special exception to the GPL applies to versions of the Autoconf ++# Macro released by the Autoconf Archive. When you make and distribute a ++# modified version of the Autoconf Macro, you may extend this special ++# exception to the GPL to apply to your modified version as well. ++ ++#serial 3 ++ ++dnl Get a default for CC_FOR_BUILD to put into Makefile. ++AC_DEFUN([AX_CC_FOR_BUILD], ++[# Put a plausible default for CC_FOR_BUILD in Makefile. ++if test -z "$CC_FOR_BUILD"; then ++ if test "x$cross_compiling" = "xno"; then ++ CC_FOR_BUILD='$(CC)' ++ else ++ CC_FOR_BUILD=gcc ++ fi ++fi ++AC_SUBST(CC_FOR_BUILD) ++# Also set EXEEXT_FOR_BUILD. ++if test "x$cross_compiling" = "xno"; then ++ EXEEXT_FOR_BUILD='$(EXEEXT)' ++else ++ AC_CACHE_CHECK([for build system executable suffix], bfd_cv_build_exeext, ++ [rm -f conftest* ++ echo 'int main () { return 0; }' > conftest.c ++ bfd_cv_build_exeext= ++ ${CC_FOR_BUILD} -o conftest conftest.c 1>&5 2>&5 ++ for file in conftest.*; do ++ case $file in ++ *.c | *.o | *.obj | *.ilk | *.pdb) ;; ++ *) bfd_cv_build_exeext=`echo $file | sed -e s/conftest//` ;; ++ esac ++ done ++ rm -f conftest* ++ test x"${bfd_cv_build_exeext}" = x && bfd_cv_build_exeext=no]) ++ EXEEXT_FOR_BUILD="" ++ test x"${bfd_cv_build_exeext}" != xno && EXEEXT_FOR_BUILD=${bfd_cv_build_exeext} ++fi ++AC_SUBST(EXEEXT_FOR_BUILD)])dnl diff --git a/gnu/packages/patches/cmake-curl-certificates.patch b/gnu/packages/patches/cmake-curl-certificates.patch index 36252083f8..7fe2615271 100644 --- a/gnu/packages/patches/cmake-curl-certificates.patch +++ b/gnu/packages/patches/cmake-curl-certificates.patch @@ -6,19 +6,19 @@ as well as /etc/ssl/certs. --- cmake-3.13.1/Source/cmCurl.cxx 2019-09-10 17:27:36.926907260 +0200 +++ cmake-3.13.1/Source/cmCurl.cxx 2019-09-10 17:52:35.475903919 +0200 -@@ -4,11 +4,8 @@ - - #include "cmThirdParty.h" +@@ -2,11 +2,8 @@ + file Copyright.txt or https://cmake.org/licensing for details. */ + #include "cmCurl.h" -#if !defined(CMAKE_USE_SYSTEM_CURL) && !defined(_WIN32) && \ - !defined(__APPLE__) && !defined(CURL_CA_BUNDLE) && !defined(CURL_CA_PATH) # define CMAKE_FIND_CAFILE # include "cmSystemTools.h" -#endif + #include "cmStringAlgorithms.h" // curl versions before 7.21.5 did not provide this error code - #if defined(LIBCURL_VERSION_NUM) && LIBCURL_VERSION_NUM < 0x071505 -@@ -29,6 +26,19 @@ std::string cmCurlSetCAInfo(::CURL* curl +@@ -30,6 +27,19 @@ ::CURLcode res = ::curl_easy_setopt(curl, CURLOPT_CAINFO, cafile); check_curl_result(res, "Unable to set TLS/SSL Verify CAINFO: "); } diff --git a/gnu/packages/patches/cyrus-sasl-ac-try-run-fix.patch b/gnu/packages/patches/cyrus-sasl-ac-try-run-fix.patch new file mode 100644 index 0000000000..8662e812e9 --- /dev/null +++ b/gnu/packages/patches/cyrus-sasl-ac-try-run-fix.patch @@ -0,0 +1,12 @@ +--- a/m4/sasl2.m4 2018-11-18 22:33:29.902625600 +0300 ++++ b/m4/sasl2.m4 2018-11-18 22:33:59.828746176 +0300 +@@ -339,7 +339,8 @@ + ], + [ AC_DEFINE(HAVE_GSS_SPNEGO,,[Define if your GSSAPI implementation supports SPNEGO]) + AC_MSG_RESULT(yes) ], +- AC_MSG_RESULT(no)) ++ AC_MSG_RESULT(no), ++ AC_MSG_RESULT(no)) + LIBS="$cmu_save_LIBS" + + else diff --git a/gnu/packages/patches/dconf-meson-0.52.patch b/gnu/packages/patches/dconf-meson-0.52.patch new file mode 100644 index 0000000000..c636edc108 --- /dev/null +++ b/gnu/packages/patches/dconf-meson-0.52.patch @@ -0,0 +1,19 @@ +Fix build failure with Meson 0.52. + +Taken from upstream: +https://gitlab.gnome.org/GNOME/dconf/commit/7ad890fb7a2ec90a777a756a1fa20a615ec7245e +https://gitlab.gnome.org/GNOME/dconf/merge_requests/54 + +diff --git a/client/meson.build b/client/meson.build +index f3b7122cb05bfa7bb481c487e3cd052aa1ad58e5..de6387e2cac2aba12b83f2614c277bada434fd16 100644 +--- a/client/meson.build ++++ b/client/meson.build +@@ -28,7 +28,7 @@ libdconf_client = static_library( + + libdconf_client_dep = declare_dependency( + dependencies: gio_dep, +- link_whole: libdconf_client, ++ link_with: libdconf_client, + ) + + libdconf = shared_library( diff --git a/gnu/packages/patches/doxygen-1.8.17-runtests.patch b/gnu/packages/patches/doxygen-1.8.17-runtests.patch new file mode 100644 index 0000000000..0340c72448 --- /dev/null +++ b/gnu/packages/patches/doxygen-1.8.17-runtests.patch @@ -0,0 +1,73 @@ +1.8.17 was released with a broken test runner. + +https://github.com/doxygen/doxygen/issues/7464 + +Taken from upstream: +https://github.com/doxygen/doxygen/commit/cd9dee013dc749a10bbe019c350e0e62b6635795 + +diff --git a/testing/runtests.py b/testing/runtests.py +index a4118b865..10fe50214 100755 +--- a/testing/runtests.py ++++ b/testing/runtests.py +@@ -3,6 +3,7 @@ + from __future__ import print_function + import argparse, glob, itertools, re, shutil, os, sys + import subprocess ++import shlex + + config_reg = re.compile('.*\/\/\s*(?P<name>\S+):\s*(?P<value>.*)$') + +@@ -28,10 +29,10 @@ def xpopen(cmd, cmd1="",encoding='utf-8-sig', getStderr=False): + return os.popen(cmd).read() # Python 2 without encoding + else: + if (getStderr): +- proc = subprocess.run(cmd1,encoding=encoding,capture_output=True) # Python 3 with encoding +- return proc.stderr ++ proc = subprocess.Popen(shlex.split(cmd1),stdout=subprocess.PIPE,stderr=subprocess.PIPE,encoding=encoding) # Python 3 with encoding ++ return proc.stderr.read() + else: +- proc = subprocess.Popen(cmd,stdout=subprocess.PIPE,stderr=subprocess.PIPE,encoding=encoding) # Python 3 with encoding ++ proc = subprocess.Popen(shlex.split(cmd),stdout=subprocess.PIPE,stderr=subprocess.PIPE,encoding=encoding) # Python 3 with encoding + return proc.stdout.read() + + class Tester: +@@ -137,7 +138,7 @@ def prepare_test(self): + print('GENERATE_DOCBOOK=NO', file=f) + if (self.args.xhtml): + print('GENERATE_HTML=YES', file=f) +- # HTML_OUTPUT can also be set locally ++ # HTML_OUTPUT can also have been set locally + print('HTML_OUTPUT=%s/html' % self.test_out, file=f) + print('HTML_FILE_EXTENSION=.xhtml', file=f) + if (self.args.pdf): +@@ -184,7 +185,7 @@ def update_test(self,testmgr): + print('Non-existing file %s after \'check:\' statement' % check_file) + return + # convert output to canonical form +- data = xpopen('%s --format --noblanks --nowarning %s' % (self.args.xmllint,check_file)).read() ++ data = xpopen('%s --format --noblanks --nowarning %s' % (self.args.xmllint,check_file)) + if data: + # strip version + data = re.sub(r'xsd" version="[0-9.-]+"','xsd" version=""',data).rstrip('\n') +@@ -326,7 +327,7 @@ def perform_test(self,testmgr): + tests.append(glob.glob('%s/*.xml' % (docbook_output))) + tests.append(glob.glob('%s/*/*/*.xml' % (docbook_output))) + tests = ' '.join(list(itertools.chain.from_iterable(tests))).replace(self.args.outputdir +'/','').replace('\\','/') +- exe_string = '%s --nonet --postvalid %s' % (self.args.xmllint,tests) ++ exe_string = '%s --noout --nonet --postvalid %s' % (self.args.xmllint,tests) + exe_string1 = exe_string + exe_string += ' %s' % (redirx) + exe_string += ' %s more "%s/temp"' % (separ,docbook_output) +@@ -346,7 +347,11 @@ def perform_test(self,testmgr): + redirx=' 2> %s/temp >nul:'%html_output + else: + redirx='2>%s/temp >/dev/null'%html_output +- exe_string = '%s --path dtd --nonet --postvalid %s/*xhtml' % (self.args.xmllint,html_output) ++ check_file = [] ++ check_file.append(glob.glob('%s/*.xhtml' % (html_output))) ++ check_file.append(glob.glob('%s/*/*/*.xhtml' % (html_output))) ++ check_file = ' '.join(list(itertools.chain.from_iterable(check_file))).replace(self.args.outputdir +'/','').replace('\\','/') ++ exe_string = '%s --noout --path dtd --nonet --postvalid %s' % (self.args.xmllint,check_file) + exe_string1 = exe_string + exe_string += ' %s' % (redirx) + exe_string += ' %s more "%s/temp"' % (separ,html_output) diff --git a/gnu/packages/patches/doxygen-test.patch b/gnu/packages/patches/doxygen-test.patch index 8ccb9ec3c4..1c0d4eb946 100644 --- a/gnu/packages/patches/doxygen-test.patch +++ b/gnu/packages/patches/doxygen-test.patch @@ -5,19 +5,40 @@ test. diff -u -r doxygen-1.8.7.orig/testing/012/citelist.xml doxygen-1.8.7/testing/012/citelist.xml --- doxygen-1.8.7.orig/testing/012/citelist.xml 2014-04-24 23:43:34.000000000 +0200 +++ doxygen-1.8.7/testing/012/citelist.xml 2014-04-24 23:49:43.000000000 +0200 -@@ -6,17 +6,6 @@ +@@ -6,38 +6,6 @@ <briefdescription> </briefdescription> <detaileddescription> - <para> - <variablelist> - <varlistentry> -- <term><anchor id="citelist_1CITEREF_knuth79"/>[1]</term> +- <term><anchor id="citelist_1CITEREF_Be09"/>[1]</term> +- </varlistentry> +- <listitem> +- <para>P.<nonbreakablespace/>Belotti. <ulink url="http://doi.org/10.1007/978-1-4614-1927-3_5">Disjunctive cuts for non-convex MINLP</ulink>. In <ulink url="#CITEREF_LeLe12">Lee and Leyffer</ulink> <ulink url="#CITEREF_LeLe12">[4]</ulink>, pages 117<ndash/>144.</para> +- <para/> +- </listitem> +- <varlistentry> +- <term><anchor id="citelist_1CITEREF_BertholdHeinzVigerske2009"/>[2]</term> +- </varlistentry> +- <listitem> +- <para>T.<nonbreakablespace/>Berthold, S.<nonbreakablespace/>Heinz, and S.<nonbreakablespace/>Vigerske. <ulink url="http://doi.org/10.1007/978-1-4614-1927-3_15">Extending a CIP framework to solve MIQCPs</ulink>. In <ulink url="#CITEREF_LeLe12">Lee and Leyffer</ulink> <ulink url="#CITEREF_LeLe12">[4]</ulink>, pages 427<ndash/>444.</para> +- <para/> +- </listitem> +- <varlistentry> +- <term><anchor id="citelist_1CITEREF_knuth79"/>[3]</term> - </varlistentry> - <listitem> - <para>Donald<nonbreakablespace/>E. Knuth. <emphasis>Tex and Metafont, New Directions in Typesetting</emphasis>. American Mathematical Society and Digital Press, Stanford, 1979.</para> - <para/> - </listitem> +- <varlistentry> +- <term><anchor id="citelist_1CITEREF_LeLe12"/>[4]</term> +- </varlistentry> +- <listitem> +- <para>Jon Lee and Sven Leyffer, editors. <ulink url="http://doi.org/10.1007/978-1-4614-1927-3"><emphasis>Mixed Integer Nonlinear Programming</emphasis></ulink>, volume 154 of <emphasis>The IMA Volumes in Mathematics and its Applications</emphasis>. Springer, 2012.</para> +- <para/> +- </listitem> - </variablelist> - </para> </detaileddescription> @@ -26,13 +47,14 @@ diff -u -r doxygen-1.8.7.orig/testing/012/citelist.xml doxygen-1.8.7/testing/012 diff -u -r doxygen-1.8.7.orig/testing/012/indexpage.xml doxygen-1.8.7/testing/012/indexpage.xml --- doxygen-1.8.7.orig/testing/012/indexpage.xml 2014-04-24 23:43:34.000000000 +0200 +++ doxygen-1.8.7/testing/012/indexpage.xml 2014-04-24 23:44:05.000000000 +0200 -@@ -4,7 +4,7 @@ - <compoundname>index</compoundname> - <title>My Project</title> +@@ -6,8 +6,8 @@ + <briefdescription> + </briefdescription> <detaileddescription> -- <para>See <ref refid="citelist_1CITEREF_knuth79" kindref="member">[1]</ref> for more info. </para> -+ <para>See knuth79 for more info. </para> +- <para>See <ref refid="citelist_1CITEREF_knuth79" kindref="member">[3]</ref> for more info.</para> +- <para>Other references with cross references see <ref refid="citelist_1CITEREF_Be09" kindref="member">[1]</ref> and <ref refid="citelist_1CITEREF_BertholdHeinzVigerske2009" kindref="member">[2]</ref> for more info. </para> ++ <para>See knuth79 for more info.</para> ++ <para>Other references with cross references see Be09 and BertholdHeinzVigerske2009 for more info. </para> </detaileddescription> </compounddef> </doxygen> - diff --git a/gnu/packages/patches/file-CVE-2018-10360.patch b/gnu/packages/patches/file-CVE-2018-10360.patch deleted file mode 100644 index 9285611c04..0000000000 --- a/gnu/packages/patches/file-CVE-2018-10360.patch +++ /dev/null @@ -1,27 +0,0 @@ -https://github.com/file/file/commit/a642587a9c9e2dd7feacdf513c3643ce26ad3c22.patch -The leading part of the patch starting at line 27 was trimmed off. -This patch should be OK to drop with file@5.35. - -From a642587a9c9e2dd7feacdf513c3643ce26ad3c22 Mon Sep 17 00:00:00 2001 -From: Christos Zoulas <christos@zoulas.com> -Date: Sat, 9 Jun 2018 16:00:06 +0000 -Subject: [PATCH] Avoid reading past the end of buffer (Rui Reis) - ---- - src/readelf.c | 5 +++-- - 1 file changed, 3 insertions(+), 2 deletions(-) - -diff --git a/src/readelf.c b/src/readelf.c -index 79c83f9f5..1f41b4611 100644 ---- a/src/readelf.c -+++ b/src/readelf.c -@@ -842,7 +842,8 @@ do_core_note(struct magic_set *ms, unsigned char *nbuf, uint32_t type, - - cname = (unsigned char *) - &nbuf[doff + prpsoffsets(i)]; -- for (cp = cname; *cp && isprint(*cp); cp++) -+ for (cp = cname; cp < nbuf + size && *cp -+ && isprint(*cp); cp++) - continue; - /* - * Linux apparently appends a space at the end diff --git a/gnu/packages/patches/file-CVE-2019-18218.patch b/gnu/packages/patches/file-CVE-2019-18218.patch new file mode 100644 index 0000000000..21069823b7 --- /dev/null +++ b/gnu/packages/patches/file-CVE-2019-18218.patch @@ -0,0 +1,55 @@ +Fix CVE-2019-18218: + +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2019-18218 + +Patch copied from upstream source repository: + +https://github.com/file/file/commit/46a8443f76cec4b41ec736eca396984c74664f84 + +From 46a8443f76cec4b41ec736eca396984c74664f84 Mon Sep 17 00:00:00 2001 +From: Christos Zoulas <christos@zoulas.com> +Date: Mon, 26 Aug 2019 14:31:39 +0000 +Subject: [PATCH] Limit the number of elements in a vector (found by oss-fuzz) + +--- + src/cdf.c | 9 ++++----- + src/cdf.h | 1 + + 2 files changed, 5 insertions(+), 5 deletions(-) + +diff --git a/src/cdf.c b/src/cdf.c +index 9d6396742..bb81d6374 100644 +--- a/src/cdf.c ++++ b/src/cdf.c +@@ -1027,8 +1027,9 @@ cdf_read_property_info(const cdf_stream_t *sst, const cdf_header_t *h, + goto out; + } + nelements = CDF_GETUINT32(q, 1); +- if (nelements == 0) { +- DPRINTF(("CDF_VECTOR with nelements == 0\n")); ++ if (nelements > CDF_ELEMENT_LIMIT || nelements == 0) { ++ DPRINTF(("CDF_VECTOR with nelements == %" ++ SIZE_T_FORMAT "u\n", nelements)); + goto out; + } + slen = 2; +@@ -1070,8 +1071,6 @@ cdf_read_property_info(const cdf_stream_t *sst, const cdf_header_t *h, + goto out; + inp += nelem; + } +- DPRINTF(("nelements = %" SIZE_T_FORMAT "u\n", +- nelements)); + for (j = 0; j < nelements && i < sh.sh_properties; + j++, i++) + { +diff --git a/src/cdf.h b/src/cdf.h +index 2f7e554b7..05056668f 100644 +--- a/src/cdf.h ++++ b/src/cdf.h +@@ -48,6 +48,7 @@ + typedef int32_t cdf_secid_t; + + #define CDF_LOOP_LIMIT 10000 ++#define CDF_ELEMENT_LIMIT 100000 + + #define CDF_SECID_NULL 0 + #define CDF_SECID_FREE -1 diff --git a/gnu/packages/patches/findutils-gnulib-libio.patch b/gnu/packages/patches/findutils-gnulib-libio.patch deleted file mode 100644 index 79f9fd914d..0000000000 --- a/gnu/packages/patches/findutils-gnulib-libio.patch +++ /dev/null @@ -1,114 +0,0 @@ -Adjust to removal of libio interface in glibc 2.28. - -Based on this gnulib commit: -https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=4af4a4a71827c0bc5e0ec67af23edef4f15cee8e - -diff --git a/gl/lib/fflush.c b/gl/lib/fflush.c -index 5ae3e41..7a82470 100644 ---- a/gl/lib/fflush.c -+++ b/gl/lib/fflush.c -@@ -33,7 +33,7 @@ - #undef fflush - - --#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ -+#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ - - /* Clear the stream's ungetc buffer, preserving the value of ftello (fp). */ - static void -@@ -72,7 +72,7 @@ clear_ungetc_buffer (FILE *fp) - - #endif - --#if ! (defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */) -+#if ! (defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */) - - # if (defined __sferror || defined __DragonFly__ || defined __ANDROID__) && defined __SNPT - /* FreeBSD, NetBSD, OpenBSD, DragonFly, Mac OS X, Cygwin, Android */ -@@ -148,7 +148,7 @@ rpl_fflush (FILE *stream) - if (stream == NULL || ! freading (stream)) - return fflush (stream); - --#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ -+#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ - - clear_ungetc_buffer_preserving_position (stream); - -diff --git a/gl/lib/fpurge.c b/gl/lib/fpurge.c -index f313b22..ecdf82d 100644 ---- a/gl/lib/fpurge.c -+++ b/gl/lib/fpurge.c -@@ -62,7 +62,7 @@ fpurge (FILE *fp) - /* Most systems provide FILE as a struct and the necessary bitmask in - <stdio.h>, because they need it for implementing getc() and putc() as - fast macros. */ --# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ -+# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ - fp->_IO_read_end = fp->_IO_read_ptr; - fp->_IO_write_ptr = fp->_IO_write_base; - /* Avoid memory leak when there is an active ungetc buffer. */ -diff --git a/gl/lib/freadahead.c b/gl/lib/freadahead.c -index 094daab..3f8101e 100644 ---- a/gl/lib/freadahead.c -+++ b/gl/lib/freadahead.c -@@ -25,7 +25,7 @@ - size_t - freadahead (FILE *fp) - { --#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ -+#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ - if (fp->_IO_write_ptr > fp->_IO_write_base) - return 0; - return (fp->_IO_read_end - fp->_IO_read_ptr) -diff --git a/gl/lib/freading.c b/gl/lib/freading.c -index 0512b19..8c48fe4 100644 ---- a/gl/lib/freading.c -+++ b/gl/lib/freading.c -@@ -31,7 +31,7 @@ freading (FILE *fp) - /* Most systems provide FILE as a struct and the necessary bitmask in - <stdio.h>, because they need it for implementing getc() and putc() as - fast macros. */ --# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ -+# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ - return ((fp->_flags & _IO_NO_WRITES) != 0 - || ((fp->_flags & (_IO_NO_READS | _IO_CURRENTLY_PUTTING)) == 0 - && fp->_IO_read_base != NULL)); -diff --git a/gl/lib/fseeko.c b/gl/lib/fseeko.c -index 1c65d2a..9026408 100644 ---- a/gl/lib/fseeko.c -+++ b/gl/lib/fseeko.c -@@ -47,7 +47,7 @@ fseeko (FILE *fp, off_t offset, int whence) - #endif - - /* These tests are based on fpurge.c. */ --#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ -+#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ - if (fp->_IO_read_end == fp->_IO_read_ptr - && fp->_IO_write_ptr == fp->_IO_write_base - && fp->_IO_save_base == NULL) -@@ -123,7 +123,7 @@ fseeko (FILE *fp, off_t offset, int whence) - return -1; - } - --#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ -+#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ - fp->_flags &= ~_IO_EOF_SEEN; - fp->_offset = pos; - #elif defined __sferror || defined __DragonFly__ || defined __ANDROID__ -diff --git a/gl/lib/stdio-impl.h b/gl/lib/stdio-impl.h -index 502d891..ea38ee2 100644 ---- a/gl/lib/stdio-impl.h -+++ b/gl/lib/stdio-impl.h -@@ -18,6 +18,12 @@ - the same implementation of stdio extension API, except that some fields - have different naming conventions, or their access requires some casts. */ - -+/* Glibc 2.28 made _IO_IN_BACKUP private. For now, work around this -+ problem by defining it ourselves. FIXME: Do not rely on glibc -+ internals. */ -+#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN -+# define _IO_IN_BACKUP 0x100 -+#endif - - /* BSD stdio derived implementations. */ - diff --git a/gnu/packages/patches/findutils-makedev.patch b/gnu/packages/patches/findutils-makedev.patch deleted file mode 100644 index 2f16c625d8..0000000000 --- a/gnu/packages/patches/findutils-makedev.patch +++ /dev/null @@ -1,22 +0,0 @@ -Include <sys/sysmacros.h> for "makedev". - -Taken from this gnulib commit: -https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=4da63c5881f60f71999a943612da9112232b9161 - -diff --git a/gl/lib/mountlist.c b/gl/lib/mountlist.c -index bb4e4ee21..cf4020e2a 100644 ---- a/gl/lib/mountlist.c -+++ b/gl/lib/mountlist.c -@@ -37,6 +37,12 @@ - # include <sys/param.h> - #endif - -+#if MAJOR_IN_MKDEV -+# include <sys/mkdev.h> -+#elif MAJOR_IN_SYSMACROS -+# include <sys/sysmacros.h> -+#endif -+ - #if defined MOUNTED_GETFSSTAT /* OSF_1 and Darwin1.3.x */ - # if HAVE_SYS_UCRED_H - # include <grp.h> /* needed on OSF V4.0 for definition of NGROUPS, diff --git a/gnu/packages/patches/findutils-test-xargs.patch b/gnu/packages/patches/findutils-test-xargs.patch deleted file mode 100644 index 10c7bed28d..0000000000 --- a/gnu/packages/patches/findutils-test-xargs.patch +++ /dev/null @@ -1,22 +0,0 @@ -This test relies on 'xargs' being available in $PATH, which is not -the case when we build the initial Findutils doing bootstrapping. -Reported at <https://savannah.gnu.org/bugs/index.php?46786>. - ---- findutils-4.6.0/find/testsuite/sv-34976-execdir-fd-leak.sh 2015-12-31 19:37:59.401526288 +0100 -+++ findutils-4.6.0/find/testsuite/sv-34976-execdir-fd-leak.sh 2015-12-31 19:38:36.061770693 +0100 -@@ -50,13 +50,14 @@ die() { - # Create test files, each 98 in the directories ".", "one" and "two". - make_test_data() { - d="$1" -+ xargs="`cd ../../xargs; pwd -P`/xargs" - ( - cd "$1" || exit 1 - mkdir one two || exit 1 - for i in ${three_to_hundred} ; do - printf "./%03d one/%03d two/%03d " $i $i $i - done \ -- | xargs touch || exit 1 -+ | "$xargs" touch || exit 1 - ) \ - || die "failed to set up the test in ${outdir}" - } diff --git a/gnu/packages/patches/fribidi-CVE-2019-18397.patch b/gnu/packages/patches/fribidi-CVE-2019-18397.patch deleted file mode 100644 index aff1a669b2..0000000000 --- a/gnu/packages/patches/fribidi-CVE-2019-18397.patch +++ /dev/null @@ -1,26 +0,0 @@ -https://github.com/fribidi/fribidi/commit/034c6e9a1d296286305f4cfd1e0072b879f52568.patch - -From 034c6e9a1d296286305f4cfd1e0072b879f52568 Mon Sep 17 00:00:00 2001 -From: Dov Grobgeld <dov.grobgeld@gmail.com> -Date: Thu, 24 Oct 2019 09:37:29 +0300 -Subject: [PATCH] Truncate isolate_level to FRIBIDI_BIDI_MAX_EXPLICIT_LEVEL - ---- - lib/fribidi-bidi.c | 4 +++- - 1 file changed, 3 insertions(+), 1 deletion(-) - -diff --git a/lib/fribidi-bidi.c b/lib/fribidi-bidi.c -index 6c84392..d384878 100644 ---- a/lib/fribidi-bidi.c -+++ b/lib/fribidi-bidi.c -@@ -747,7 +747,9 @@ fribidi_get_par_embedding_levels_ex ( - } - - RL_LEVEL (pp) = level; -- RL_ISOLATE_LEVEL (pp) = isolate_level++; -+ RL_ISOLATE_LEVEL (pp) = isolate_level; -+ if (isolate_level < FRIBIDI_BIDI_MAX_EXPLICIT_LEVEL-1) -+ isolate_level++; - base_level_per_iso_level[isolate_level] = new_level; - - if (!FRIBIDI_IS_NEUTRAL (override)) diff --git a/gnu/packages/patches/ghostscript-no-header-id.patch b/gnu/packages/patches/ghostscript-no-header-id.patch index da1aa5530f..45fc95fd6e 100644 --- a/gnu/packages/patches/ghostscript-no-header-id.patch +++ b/gnu/packages/patches/ghostscript-no-header-id.patch @@ -9,10 +9,10 @@ See: https://bugs.ghostscript.com/show_bug.cgi?id=698208 diff -ur orig/gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c --- orig/gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c 2017-07-09 23:30:28.960479189 +0200 +++ gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c 2017-07-09 23:34:34.306524488 +0200 -@@ -1785,8 +1785,11 @@ +@@ -1810,8 +1810,11 @@ * +1 for the linearisation dict and +1 for the primary hint stream. */ - linear_params->FirsttrailerOffset = gp_ftell_64(linear_params->Lin_File.file); + linear_params->FirsttrailerOffset = gp_ftell(linear_params->Lin_File.file); - gs_sprintf(LDict, "\ntrailer\n<</Size %ld/Info %d 0 R/Root %d 0 R/ID[%s%s]/Prev %d>>\nstartxref\r\n0\n%%%%EOF\n \n", - linear_params->LastResource + 3, pdev->ResourceUsage[linear_params->Info_id].NewObjectNumber, pdev->ResourceUsage[linear_params->Catalog_id].NewObjectNumber, fileID, fileID, 0); + gs_sprintf(LDict, "\ntrailer\n<</Size %ld/Info %d 0 R/Root %d 0 R", @@ -20,10 +20,10 @@ diff -ur orig/gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c gnu-ghostscript-9. + if (pdev->OwnerPassword.size > 0 || !(!getenv("GS_GENERATE_UUIDS") || (strcasecmp(getenv("GS_GENERATE_UUIDS"), "0") != 0 && strcasecmp(getenv("GS_GENERATE_UUIDS"), "no") != 0))) /* ID is mandatory when encrypting */ + gs_sprintf(LDict, "/ID[%s%s]", fileID, fileID); + gs_sprintf(LDict, "/Prev %d>>\nstartxref\r\n0\n%%%%EOF\n \n", 0); - fwrite(LDict, strlen(LDict), 1, linear_params->Lin_File.file); + gp_fwrite(LDict, strlen(LDict), 1, linear_params->Lin_File.file); /* Write document catalog (Part 4) */ -@@ -2321,8 +2324,11 @@ +@@ -2346,8 +2349,11 @@ if (code != 0) return_error(gs_error_ioerror); @@ -34,10 +34,10 @@ diff -ur orig/gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c gnu-ghostscript-9. + if (pdev->OwnerPassword.size > 0 || !(!getenv("GS_GENERATE_UUIDS") || (strcasecmp(getenv("GS_GENERATE_UUIDS"), "0") != 0 || strcasecmp(getenv("GS_GENERATE_UUIDS"), "no") != 0))) /* ID is mandatory when encrypting */ + gs_sprintf(LDict, "/ID[%s%s]", fileID, fileID); + gs_sprintf(LDict, "/Prev %"PRId64">>\nstartxref\r\n0\n%%%%EOF\n", mainxref); - fwrite(LDict, strlen(LDict), 1, linear_params->sfile); + gp_fwrite(LDict, strlen(LDict), 1, linear_params->sfile); - code = gp_fseek_64(linear_params->sfile, pdev->ResourceUsage[HintStreamObj].LinearisedOffset, SEEK_SET); -@@ -3016,10 +3022,12 @@ + code = gp_fseek(linear_params->sfile, pdev->ResourceUsage[HintStreamObj].LinearisedOffset, SEEK_SET); +@@ -3012,10 +3018,12 @@ stream_puts(s, "trailer\n"); pprintld3(s, "<< /Size %ld /Root %ld 0 R /Info %ld 0 R\n", pdev->next_id, Catalog_id, Info_id); diff --git a/gnu/packages/patches/giflib-make-reallocarray-private.patch b/gnu/packages/patches/giflib-make-reallocarray-private.patch deleted file mode 100644 index 69228c5be8..0000000000 --- a/gnu/packages/patches/giflib-make-reallocarray-private.patch +++ /dev/null @@ -1,120 +0,0 @@ -Move the declaration from gif_lib.h to gif_lib_private.h to solve -conflicts when some .c-file #includes both stdlib.h and gif_lib.h. -See also https://sourceforge.net/p/giflib/bugs/110/ - -diff -ur giflib-5.1.4.orig/lib/dgif_lib.c giflib-5.1.4/lib/dgif_lib.c ---- giflib-5.1.4.orig/lib/dgif_lib.c 2018-02-28 20:31:02.294682673 +0100 -+++ giflib-5.1.4/lib/dgif_lib.c 2018-02-28 22:38:11.659126414 +0100 -@@ -396,7 +396,7 @@ - - if (GifFile->SavedImages) { - SavedImage* new_saved_images = -- (SavedImage *)reallocarray(GifFile->SavedImages, -+ (SavedImage *)giflib_private_reallocarray(GifFile->SavedImages, - (GifFile->ImageCount + 1), sizeof(SavedImage)); - if (new_saved_images == NULL) { - GifFile->Error = D_GIF_ERR_NOT_ENOUGH_MEM; -@@ -1108,7 +1108,7 @@ - if (ImageSize > (SIZE_MAX / sizeof(GifPixelType))) { - return GIF_ERROR; - } -- sp->RasterBits = (unsigned char *)reallocarray(NULL, ImageSize, -+ sp->RasterBits = (unsigned char *)giflib_private_reallocarray(NULL, ImageSize, - sizeof(GifPixelType)); - - if (sp->RasterBits == NULL) { -diff -ur giflib-5.1.4.orig/lib/gifalloc.c giflib-5.1.4/lib/gifalloc.c ---- giflib-5.1.4.orig/lib/gifalloc.c 2018-02-28 20:31:02.294682673 +0100 -+++ giflib-5.1.4/lib/gifalloc.c 2018-02-28 22:38:11.657126423 +0100 -@@ -8,7 +8,7 @@ - #include <stdio.h> - #include <string.h> - --#include "gif_lib.h" -+#include "gif_lib_private.h" - - #define MAX(x, y) (((x) > (y)) ? (x) : (y)) - -@@ -188,7 +188,7 @@ - - /* perhaps we can shrink the map? */ - if (RoundUpTo < ColorUnion->ColorCount) { -- GifColorType *new_map = (GifColorType *)reallocarray(Map, -+ GifColorType *new_map = (GifColorType *)giflib_private_reallocarray(Map, - RoundUpTo, sizeof(GifColorType)); - if( new_map == NULL ) { - GifFreeMapObject(ColorUnion); -@@ -232,7 +232,7 @@ - if (*ExtensionBlocks == NULL) - *ExtensionBlocks=(ExtensionBlock *)malloc(sizeof(ExtensionBlock)); - else { -- ExtensionBlock* ep_new = (ExtensionBlock *)reallocarray -+ ExtensionBlock* ep_new = (ExtensionBlock *)giflib_private_reallocarray - (*ExtensionBlocks, (*ExtensionBlockCount + 1), - sizeof(ExtensionBlock)); - if( ep_new == NULL ) -@@ -325,7 +325,7 @@ - if (GifFile->SavedImages == NULL) - GifFile->SavedImages = (SavedImage *)malloc(sizeof(SavedImage)); - else -- GifFile->SavedImages = (SavedImage *)reallocarray(GifFile->SavedImages, -+ GifFile->SavedImages = (SavedImage *)giflib_private_reallocarray(GifFile->SavedImages, - (GifFile->ImageCount + 1), sizeof(SavedImage)); - - if (GifFile->SavedImages == NULL) -@@ -355,7 +355,7 @@ - } - - /* next, the raster */ -- sp->RasterBits = (unsigned char *)reallocarray(NULL, -+ sp->RasterBits = (unsigned char *)giflib_private_reallocarray(NULL, - (CopyFrom->ImageDesc.Height * - CopyFrom->ImageDesc.Width), - sizeof(GifPixelType)); -@@ -369,7 +369,7 @@ - - /* finally, the extension blocks */ - if (sp->ExtensionBlocks != NULL) { -- sp->ExtensionBlocks = (ExtensionBlock *)reallocarray(NULL, -+ sp->ExtensionBlocks = (ExtensionBlock *)giflib_private_reallocarray(NULL, - CopyFrom->ExtensionBlockCount, - sizeof(ExtensionBlock)); - if (sp->ExtensionBlocks == NULL) { -diff -ur giflib-5.1.4.orig/lib/gif_lib.h giflib-5.1.4/lib/gif_lib.h ---- giflib-5.1.4.orig/lib/gif_lib.h 2018-02-28 20:31:02.294682673 +0100 -+++ giflib-5.1.4/lib/gif_lib.h 2018-02-28 20:31:43.135716712 +0100 -@@ -244,9 +244,6 @@ - GifPixelType ColorTransIn2[]); - extern int GifBitSize(int n); - --extern void * --reallocarray(void *optr, size_t nmemb, size_t size); -- - /****************************************************************************** - Support for the in-core structures allocation (slurp mode). - ******************************************************************************/ -diff -ur giflib-5.1.4.orig/lib/gif_lib_private.h giflib-5.1.4/lib/gif_lib_private.h ---- giflib-5.1.4.orig/lib/gif_lib_private.h 2018-02-28 20:31:02.294682673 +0100 -+++ giflib-5.1.4/lib/gif_lib_private.h 2018-02-28 22:38:11.657126423 +0100 -@@ -54,6 +54,9 @@ - bool gif89; - } GifFilePrivateType; - -+extern void * -+giflib_private_reallocarray(void *optr, size_t nmemb, size_t size); -+ - #endif /* _GIF_LIB_PRIVATE_H */ - - /* end */ -diff -ur giflib-5.1.4.orig/lib/openbsd-reallocarray.c giflib-5.1.4/lib/openbsd-reallocarray.c ---- giflib-5.1.4.orig/lib/openbsd-reallocarray.c 2018-02-28 20:31:02.295682659 +0100 -+++ giflib-5.1.4/lib/openbsd-reallocarray.c 2018-02-28 22:38:11.656126428 +0100 -@@ -27,7 +27,7 @@ - #define MUL_NO_OVERFLOW ((size_t)1 << (sizeof(size_t) * 4)) - - void * --reallocarray(void *optr, size_t nmemb, size_t size) -+giflib_private_reallocarray(void *optr, size_t nmemb, size_t size) - { - if ((nmemb >= MUL_NO_OVERFLOW || size >= MUL_NO_OVERFLOW) && - nmemb > 0 && SIZE_MAX / nmemb < size) { diff --git a/gnu/packages/patches/glibc-CVE-2019-19126.patch b/gnu/packages/patches/glibc-CVE-2019-19126.patch new file mode 100644 index 0000000000..5b9ac58ab7 --- /dev/null +++ b/gnu/packages/patches/glibc-CVE-2019-19126.patch @@ -0,0 +1,22 @@ +Fix CVE-2019-19126: + +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2019-19126 +https://sourceware.org/bugzilla/show_bug.cgi?id=25204 + +Taken from upstream: +https://sourceware.org/git/?p=glibc.git;a=commit;h=37c90e117310728a4ad1eb998c0bbe7d79c4a398 + +diff --git a/sysdeps/unix/sysv/linux/x86_64/64/dl-librecon.h b/sysdeps/unix/sysv/linux/x86_64/64/dl-librecon.h +index 975cbe2..df2cdfd 100644 +--- a/sysdeps/unix/sysv/linux/x86_64/64/dl-librecon.h ++++ b/sysdeps/unix/sysv/linux/x86_64/64/dl-librecon.h +@@ -31,7 +31,8 @@ + environment variable, LD_PREFER_MAP_32BIT_EXEC. */ + #define EXTRA_LD_ENVVARS \ + case 21: \ +- if (memcmp (envline, "PREFER_MAP_32BIT_EXEC", 21) == 0) \ ++ if (!__libc_enable_secure \ ++ && memcmp (envline, "PREFER_MAP_32BIT_EXEC", 21) == 0) \ + GLRO(dl_x86_cpu_features).feature[index_arch_Prefer_MAP_32BIT_EXEC] \ + |= bit_arch_Prefer_MAP_32BIT_EXEC; \ + break; diff --git a/gnu/packages/patches/gsl-test-i686.patch b/gnu/packages/patches/gsl-test-i686.patch deleted file mode 100644 index 8828c08614..0000000000 --- a/gnu/packages/patches/gsl-test-i686.patch +++ /dev/null @@ -1,17 +0,0 @@ -Work around a test failure due to a rounding issue on 32-bit -platforms, as reported at: - - https://lists.gnu.org/archive/html/bug-gsl/2016-10/msg00000.html - ---- gsl-2.2.1/linalg/test.c 2016-10-05 13:27:42.464059730 +0200 -+++ gsl-2.2.1/linalg/test.c 2016-10-05 13:27:46.988095882 +0200 -@@ -4843,9 +4843,6 @@ main(void) - gsl_test(test_cholesky_decomp_unit(), "Cholesky Decomposition [unit triangular]"); - gsl_test(test_cholesky_solve(), "Cholesky Solve"); - -- gsl_test(test_cholesky_decomp(r), "Cholesky Decomposition"); -- gsl_test(test_cholesky_invert(r), "Cholesky Inverse"); -- gsl_test(test_pcholesky_decomp(r), "Pivoted Cholesky Decomposition"); - gsl_test(test_pcholesky_solve(r), "Pivoted Cholesky Solve"); - gsl_test(test_pcholesky_invert(r), "Pivoted Cholesky Inverse"); - gsl_test(test_mcholesky_decomp(r), "Modified Cholesky Decomposition"); diff --git a/gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch b/gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch new file mode 100644 index 0000000000..9ea9a47677 --- /dev/null +++ b/gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch @@ -0,0 +1,55 @@ +From a6e9e62a77ecc5012929613e20da23b2636450a5 Mon Sep 17 00:00:00 2001 +From: Mathieu Othacehe <mathieu.othacehe@parrot.com> +Date: Mon, 25 Mar 2019 11:00:38 +0100 +Subject: [PATCH] cross compile + +--- + build-aux/guile.am | 2 +- + configure.ac | 19 ++++++++++++------- + 2 files changed, 13 insertions(+), 8 deletions(-) + +diff --git a/build-aux/guile.am b/build-aux/guile.am +index dc1e63f..3126372 100644 +--- a/build-aux/guile.am ++++ b/build-aux/guile.am +@@ -16,4 +16,4 @@ EXTRA_DIST = $(SOURCES) $(NOCOMP_SOURCES) + GUILE_WARNINGS = -Wunbound-variable -Warity-mismatch -Wformat + SUFFIXES = .scm .go + .scm.go: +- $(AM_V_GEN)$(top_builddir)/env $(GUILE_TOOLS) compile $(GUILE_WARNINGS) -o "$@" "$<" ++ $(AM_V_GEN)$(top_builddir)/env $(GUILE_TOOLS) compile $(GUILE_TARGET) $(GUILE_WARNINGS) -o "$@" "$<" +diff --git a/configure.ac b/configure.ac +index f648fcb..2d34d0a 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -21,15 +21,20 @@ PKG_CHECK_MODULES([SQLITE], [sqlite3]) + SQLITE_LIBDIR="`"$PKG_CONFIG" sqlite3 --variable libdir`" + AC_SUBST([SQLITE_LIBDIR]) + +-AC_MSG_CHECKING([whether '$SQLITE_LIBDIR/libsqlite3' is usable]) +-GUILE_CHECK([retval], +- [(dynamic-func \"sqlite3_open_v2\" ++if test "$cross_compiling" = "no"; then ++ AC_MSG_CHECKING([whether '$SQLITE_LIBDIR/libsqlite3' is usable]) ++ GUILE_CHECK([retval], ++ [(dynamic-func \"sqlite3_open_v2\" + (dynamic-link \"$SQLITE_LIBDIR/libsqlite3\"))]) +-if test "$retval" != 0; then +- AC_MSG_RESULT([no]) +- AC_MSG_ERROR([failed to load '$SQLITE_LIBDIR/libsqlite3']) ++ if test "$retval" != 0; then ++ AC_MSG_RESULT([no]) ++ AC_MSG_ERROR([failed to load '$SQLITE_LIBDIR/libsqlite3']) ++ else ++ AC_MSG_RESULT([yes]) ++ fi + else +- AC_MSG_RESULT([yes]) ++ GUILE_TARGET="--target=$host_alias" ++ AC_SUBST([GUILE_TARGET]) + fi + + AC_CONFIG_FILES([Makefile sqlite3.scm]) +-- +2.17.1 + diff --git a/gnu/packages/patches/libffi-3.2.1-complex-alpha.patch b/gnu/packages/patches/libffi-3.2.1-complex-alpha.patch deleted file mode 100644 index ebbc0635a5..0000000000 --- a/gnu/packages/patches/libffi-3.2.1-complex-alpha.patch +++ /dev/null @@ -1,28 +0,0 @@ -The patch fixes build failure of form: - ../src/alpha/osf.S:298:2: error: #error "osf.S out of sync with ffi.h" -Upstream fixed the bug in a more invasive way -but didn't have releases since 3.2.1. - -The patch is taken from Gentoo: -https://gitweb.gentoo.org/repo/gentoo.git/tree/dev-libs/libffi/files/libffi-3.2.1-complex_alpha.patch - ---- libffi-3.2.1/src/alpha/osf.S 2015-01-16 10:46:15.000000000 +0100 -+++ libffi-3.2.1/src/alpha/osf.S 2015-01-16 10:46:24.000000000 +0100 -@@ -279,6 +279,7 @@ - .gprel32 $load_64 # FFI_TYPE_SINT64 - .gprel32 $load_none # FFI_TYPE_STRUCT - .gprel32 $load_64 # FFI_TYPE_POINTER -+ .gprel32 $load_none # FFI_TYPE_COMPLEX - - /* Assert that the table above is in sync with ffi.h. */ - -@@ -294,7 +295,8 @@ - || FFI_TYPE_SINT64 != 12 \ - || FFI_TYPE_STRUCT != 13 \ - || FFI_TYPE_POINTER != 14 \ -- || FFI_TYPE_LAST != 14 -+ || FFI_TYPE_COMPLEX != 15 \ -+ || FFI_TYPE_LAST != 15 - #error "osf.S out of sync with ffi.h" - #endif - diff --git a/gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch b/gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch deleted file mode 100644 index 35f2bf5963..0000000000 --- a/gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch +++ /dev/null @@ -1,31 +0,0 @@ -Fix integer overflow which can potentially lead to RCE. - -https://www.openwall.com/lists/oss-security/2019/11/11/1 -https://nvd.nist.gov/vuln/detail/CVE-2019-2201 - -The problem was partially fixed in 2.0.3. This patch is a follow-up. -https://github.com/libjpeg-turbo/libjpeg-turbo/issues/388 -https://github.com/libjpeg-turbo/libjpeg-turbo/commit/c30b1e72dac76343ef9029833d1561de07d29bad - -diff --git a/tjbench.c b/tjbench.c -index a7d397318..13a5bde62 100644 ---- a/tjbench.c -+++ b/tjbench.c -@@ -171,7 +171,7 @@ static int decomp(unsigned char *srcBuf, unsigned char **jpegBuf, - } - /* Set the destination buffer to gray so we know whether the decompressor - attempted to write to it */ -- memset(dstBuf, 127, pitch * scaledh); -+ memset(dstBuf, 127, (size_t)pitch * scaledh); - - if (doYUV) { - int width = doTile ? tilew : scaledw; -@@ -193,7 +193,7 @@ static int decomp(unsigned char *srcBuf, unsigned char **jpegBuf, - double start = getTime(); - - for (row = 0, dstPtr = dstBuf; row < ntilesh; -- row++, dstPtr += pitch * tileh) { -+ row++, dstPtr += (size_t)pitch * tileh) { - for (col = 0, dstPtr2 = dstPtr; col < ntilesw; - col++, tile++, dstPtr2 += ps * tilew) { - int width = doTile ? min(tilew, w - col * tilew) : scaledw; diff --git a/gnu/packages/patches/libxslt-generated-ids.patch b/gnu/packages/patches/libxslt-generated-ids.patch index 4273875c7c..1cd2363d6a 100644 --- a/gnu/packages/patches/libxslt-generated-ids.patch +++ b/gnu/packages/patches/libxslt-generated-ids.patch @@ -162,10 +162,10 @@ diff --git a/libxslt/xsltInternals.h b/libxslt/xsltInternals.h index 95e8fe6..8eedae4 100644 --- a/libxslt/xsltInternals.h +++ b/libxslt/xsltInternals.h -@@ -1786,6 +1786,8 @@ struct _xsltTransformContext { - int funcLevel; /* Needed to catch recursive functions issues */ - int maxTemplateDepth; +@@ -1782,6 +1782,8 @@ struct _xsltTransformContext { int maxTemplateVars; + unsigned long opLimit; + unsigned long opCount; + + unsigned long nextid;/* for generating stable ids */ }; diff --git a/gnu/packages/patches/pango-skip-libthai-test.patch b/gnu/packages/patches/pango-skip-libthai-test.patch new file mode 100644 index 0000000000..98732b5391 --- /dev/null +++ b/gnu/packages/patches/pango-skip-libthai-test.patch @@ -0,0 +1,23 @@ +Skip Thai character test when libthai is unavailable. + +Taken from upstream bug tracker: +https://gitlab.gnome.org/GNOME/pango/merge_requests/161 +https://gitlab.gnome.org/GNOME/pango/commit/b73284747ac937e31dc9191f84ed6e24284c88ee + +diff --git a/tests/test-break.c b/tests/test-break.c +index 8549b678bba69360d07dce3af21d915412f20d51..47fa3009165e19a331aa04a0df4351ae2323933b 100644 +--- a/tests/test-break.c ++++ b/tests/test-break.c +@@ -305,6 +305,12 @@ main (int argc, char *argv[]) + if (!strstr (name, "break")) + continue; + ++#ifndef HAVE_LIBTHAI ++ /* four.break involves Thai, so only test it when we have libthai */ ++ if (strstr (name, "four.break")) ++ continue; ++#endif ++ + path = g_strdup_printf ("/break/%s", name); + g_test_add_data_func_full (path, g_test_build_filename (G_TEST_DIST, "breaks", name, NULL), + test_break, g_free); diff --git a/gnu/packages/patches/python-2.7-search-paths.patch b/gnu/packages/patches/python-2.7-search-paths.patch index a012bc8fe0..5a345c7691 100644 --- a/gnu/packages/patches/python-2.7-search-paths.patch +++ b/gnu/packages/patches/python-2.7-search-paths.patch @@ -3,13 +3,17 @@ looking for headers and libraries. --- Python-2.7.10/setup.py 2015-10-07 18:33:18.125153186 +0200 +++ Python-2.7.10/setup.py 2015-10-07 18:33:47.497347552 +0200 -@@ -526,6 +526,10 @@ class PyBuildExt(build_ext): +@@ -526,6 +526,14 @@ class PyBuildExt(build_ext): inc_dirs += ['/system/include', '/atheos/autolnk/include'] inc_dirs += os.getenv('C_INCLUDE_PATH', '').split(os.pathsep) + # Always honor these variables. -+ lib_dirs += os.getenv('LIBRARY_PATH', '').split(os.pathsep) -+ inc_dirs += os.getenv('CPATH', '').split(os.pathsep) ++ if not cross_compiling: ++ lib_dirs += os.getenv('LIBRARY_PATH', '').split(os.pathsep) ++ inc_dirs += os.getenv('CPATH', '').split(os.pathsep) ++ else: ++ lib_dirs = os.getenv('CROSS_LIBRARY_PATH', '').split(os.pathsep) ++ inc_dirs = os.getenv('CROSS_CPATH', '').split(os.pathsep) + # OSF/1 and Unixware have some stuff in /usr/ccs/lib (like -ldb) if host_platform in ['osf1', 'unixware7', 'openunix8']: diff --git a/gnu/packages/patches/python-3-search-paths.patch b/gnu/packages/patches/python-3-search-paths.patch index 5fea9c66b6..cf1647207b 100644 --- a/gnu/packages/patches/python-3-search-paths.patch +++ b/gnu/packages/patches/python-3-search-paths.patch @@ -3,7 +3,7 @@ looking for headers and libraries. --- a/setup.py 2015-10-07 23:32:58.891329173 +0200 +++ b/setup.py 2015-10-07 23:46:29.653349924 +0200 -@@ -575,8 +575,8 @@ +@@ -575,15 +575,15 @@ # if a file is found in one of those directories, it can # be assumed that no additional -I,-L directives are needed. if not cross_compiling: @@ -14,3 +14,12 @@ looking for headers and libraries. else: # Add the sysroot paths. 'sysroot' is a compiler option used to # set the logical path of the standard system headers and + # libraries. +- lib_dirs = (self.compiler.library_dirs + ++ lib_dirs = (os.getenv('CROSS_LIBRARY_PATH', '').split(os.pathsep) + + sysroot_paths(('LDFLAGS', 'CC'), system_lib_dirs)) +- inc_dirs = (self.compiler.include_dirs + ++ inc_dirs = (os.getenv('CROSS_CPATH', '').split(os.pathsep) + + sysroot_paths(('CPPFLAGS', 'CFLAGS', 'CC'), + system_include_dirs)) + exts = [] diff --git a/gnu/packages/patches/python-cross-compile.patch b/gnu/packages/patches/python-cross-compile.patch new file mode 100644 index 0000000000..5a470e1852 --- /dev/null +++ b/gnu/packages/patches/python-cross-compile.patch @@ -0,0 +1,145 @@ +Patch taken from https://bugs.python.org/issue22724 and augmented with +following Nix patch +https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/interpreters/python/cpython/2.7/cross-compile.patch +to fix the whole cross-compilation circus. + +--- + Makefile.pre.in | 14 +++++++------- + configure | 5 ++++- + setup.py | 9 ++++++--- + 3 files changed, 17 insertions(+), 11 deletions(-) + +diff --git a/Makefile.pre.in b/Makefile.pre.in +index 2a14f3323b..6239fc32fc 100644 +--- a/Makefile.pre.in ++++ b/Makefile.pre.in +@@ -492,7 +492,7 @@ $(BUILDPYTHON): Modules/python.o $(LIBRARY) $(LDLIBRARY) + $(BLDLIBRARY) $(LIBS) $(MODLIBS) $(SYSLIBS) $(LDLAST) + + platform: $(BUILDPYTHON) pybuilddir.txt +- $(RUNSHARED) $(PYTHON_FOR_BUILD) -c 'import sys ; from sysconfig import get_platform ; print get_platform()+"-"+sys.version[0:3]' >platform ++ $(RUNSHARED) $(PY_BUILD_ENVIRON) $(PYTHON_FOR_BUILD) -c 'import sys ; from sysconfig import get_platform ; print get_platform()+"-"+sys.version[0:3]' >platform + + # Create build directory and generate the sysconfig build-time data there. + # pybuilddir.txt contains the name of the build dir and is used for +@@ -503,7 +503,7 @@ platform: $(BUILDPYTHON) pybuilddir.txt + # or removed in case of failure. + pybuilddir.txt: $(BUILDPYTHON) + @echo "none" > ./pybuilddir.txt +- $(RUNSHARED) $(PYTHON_FOR_BUILD) -S -m sysconfig --generate-posix-vars ;\ ++ $(RUNSHARED) $(PY_BUILD_ENVIRON) $(PYTHON_FOR_BUILD) -S -m sysconfig --generate-posix-vars ;\ + if test $$? -ne 0 ; then \ + echo "generate-posix-vars failed" ; \ + rm -f ./pybuilddir.txt ; \ +@@ -525,7 +525,7 @@ sharedmods: $(BUILDPYTHON) pybuilddir.txt Modules/_math.o + esac; \ + $(RUNSHARED) CC='$(CC)' LDSHARED='$(BLDSHARED)' OPT='$(OPT)' \ + _TCLTK_INCLUDES='$(TCLTK_INCLUDES)' _TCLTK_LIBS='$(TCLTK_LIBS)' \ +- $(PYTHON_FOR_BUILD) $(srcdir)/setup.py $$quiet build ++ $(PY_BUILD_ENVIRON) $(PYTHON_FOR_BUILD) $(srcdir)/setup.py $$quiet build + + # Build static library + # avoid long command lines, same as LIBRARY_OBJS +@@ -928,7 +928,7 @@ install: @FRAMEWORKINSTALLFIRST@ commoninstall bininstall maninstall @FRAMEWORKI + upgrade) ensurepip="--upgrade" ;; \ + install|*) ensurepip="" ;; \ + esac; \ +- $(RUNSHARED) $(PYTHON_FOR_BUILD) -m ensurepip \ ++ $(RUNSHARED) $(PY_BUILD_ENVIRON) $(PYTHON_FOR_BUILD) -m ensurepip \ + $$ensurepip --root=$(DESTDIR)/ ; \ + fi + +@@ -939,7 +939,7 @@ altinstall: commoninstall + upgrade) ensurepip="--altinstall --upgrade --no-default-pip" ;; \ + install|*) ensurepip="--altinstall --no-default-pip" ;; \ + esac; \ +- $(RUNSHARED) $(PYTHON_FOR_BUILD) -m ensurepip \ ++ $(RUNSHARED) $(PY_BUILD_ENVIRON) $(PYTHON_FOR_BUILD) -m ensurepip \ + $$ensurepip --root=$(DESTDIR)/ ; \ + fi + +@@ -1270,7 +1270,7 @@ libainstall: @DEF_MAKE_RULE@ python-config + # Install the dynamically loadable modules + # This goes into $(exec_prefix) + sharedinstall: sharedmods +- $(RUNSHARED) $(PYTHON_FOR_BUILD) $(srcdir)/setup.py install \ ++ $(RUNSHARED) $(PY_BUILD_ENVIRON) $(PYTHON_FOR_BUILD) $(srcdir)/setup.py install \ + --prefix=$(prefix) \ + --install-scripts=$(BINDIR) \ + --install-platlib=$(DESTSHARED) \ +@@ -1344,7 +1344,7 @@ frameworkinstallextras: + # This installs a few of the useful scripts in Tools/scripts + scriptsinstall: + SRCDIR=$(srcdir) $(RUNSHARED) \ +- $(PYTHON_FOR_BUILD) $(srcdir)/Tools/scripts/setup.py install \ ++ $(PY_BUILD_ENVIRON) $(PYTHON_FOR_BUILD) $(srcdir)/Tools/scripts/setup.py install \ + --prefix=$(prefix) \ + --install-scripts=$(BINDIR) \ + --root=$(DESTDIR)/ +diff --git a/configure b/configure +index 67300fe2b6..6050f588c5 100755 +--- a/configure ++++ b/configure +@@ -741,6 +741,7 @@ CONFIG_ARGS + SOVERSION + VERSION + PYTHON_FOR_BUILD ++PY_BUILD_ENVIRON + PYTHON_FOR_REGEN + host_os + host_vendor +@@ -2964,7 +2965,8 @@ $as_echo_n "checking for python interpreter for cross build... " >&6; } + fi + { $as_echo "$as_me:${as_lineno-$LINENO}: result: $interp" >&5 + $as_echo "$interp" >&6; } +- PYTHON_FOR_BUILD='_PYTHON_PROJECT_BASE=$(abs_builddir) _PYTHON_HOST_PLATFORM=$(_PYTHON_HOST_PLATFORM) PYTHONPATH=$(shell test -f pybuilddir.txt && echo $(abs_builddir)/`cat pybuilddir.txt`:)$(srcdir)/Lib:$(srcdir)/Lib/$(PLATDIR) '$interp ++ PY_BUILD_ENVIRON='_PYTHON_PROJECT_BASE=$(abs_builddir) _PYTHON_HOST_PLATFORM=$(_PYTHON_HOST_PLATFORM) PYTHONPATH=$(shell test -f pybuilddir.txt && echo $(abs_builddir)/`cat pybuilddir.txt`:)$(srcdir)/Lib:$(srcdir)/Lib/$(PLATDIR)' ++ PYTHON_FOR_BUILD=$interp + fi + elif test "$cross_compiling" = maybe; then + as_fn_error $? "Cross compiling required --host=HOST-TUPLE and --build=ARCH" "$LINENO" 5 +@@ -2974,6 +2976,7 @@ fi + + + ++ + if test "$prefix" != "/"; then + prefix=`echo "$prefix" | sed -e 's/\/$//g'` + fi +diff --git a/setup.py b/setup.py +index cb47a2339c..472e7e2b26 100644 +--- a/setup.py ++++ b/setup.py +@@ -497,8 +497,6 @@ class PyBuildExt(build_ext): + if not cross_compiling: + add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib') + add_dir_to_list(self.compiler.include_dirs, '/usr/local/include') +- if cross_compiling: +- self.add_gcc_paths() + self.add_multiarch_paths() + + # Add paths specified in the environment variables LDFLAGS and +@@ -556,7 +554,10 @@ class PyBuildExt(build_ext): + # be assumed that no additional -I,-L directives are needed. + inc_dirs = self.compiler.include_dirs[:] + lib_dirs = self.compiler.library_dirs[:] +- if not cross_compiling: ++ if cross_compiling: ++ inc_dirs = [] ++ lib_dirs = [] ++ else: + for d in ( + '/usr/include', + ): +@@ -621,6 +622,8 @@ class PyBuildExt(build_ext): + # Some modules that are normally always on: + #exts.append( Extension('_weakref', ['_weakref.c']) ) + ++ self.compiler.library_dirs = lib_dirs + [ '.' ] ++ + # array objects + exts.append( Extension('array', ['arraymodule.c']) ) + +-- +2.17.1 + diff --git a/gnu/packages/patches/swig-guile-gc.patch b/gnu/packages/patches/swig-guile-gc.patch deleted file mode 100644 index 0e745a6247..0000000000 --- a/gnu/packages/patches/swig-guile-gc.patch +++ /dev/null @@ -1,76 +0,0 @@ -Fix garbage collection for Guile versions >= 2.0.12. This issue showed -up when running the tests on i686-linux. - -Taken from this upstream commit: -https://github.com/swig/swig/commit/38f2ab0c30e369e63bbd0a6152108488d0de68e1 - -diff --git a/Lib/guile/guile_scm_run.swg b/Lib/guile/guile_scm_run.swg -index 274f197158..0d04cb7c62 100644 ---- a/Lib/guile/guile_scm_run.swg -+++ b/Lib/guile/guile_scm_run.swg -@@ -99,6 +99,7 @@ SWIG_Guile_scm2newstr(SCM str, size_t *len) { - static int swig_initialized = 0; - static scm_t_bits swig_tag = 0; - static scm_t_bits swig_collectable_tag = 0; -+static scm_t_bits swig_finalized_tag = 0; - static scm_t_bits swig_destroyed_tag = 0; - static scm_t_bits swig_member_function_tag = 0; - static SCM swig_make_func = SCM_EOL; -@@ -163,7 +164,19 @@ SWIG_Guile_PointerType(SCM object) - } - else scm_wrong_type_arg("SWIG-Guile-PointerType", 1, object); - } -- -+ -+SWIGINTERN int -+SWIG_Guile_IsValidSmob(SCM smob) -+{ -+ /* We do not accept smobs representing destroyed pointers, but we have to -+ allow finalized smobs because Guile >= 2.0.12 sets all smob instances -+ to the 'finalized' type before calling their 'free' function. This change -+ was introduced to Guile in commit 8dff3af087c6eaa83ae0d72aa8b22aef5c65d65d */ -+ return SCM_SMOB_PREDICATE(swig_tag, smob) -+ || SCM_SMOB_PREDICATE(swig_collectable_tag, smob) -+ || SCM_SMOB_PREDICATE(swig_finalized_tag, smob); -+} -+ - SWIGINTERN int - SWIG_Guile_ConvertPtr(SCM s, void **result, swig_type_info *type, int flags) - { -@@ -179,8 +192,7 @@ SWIG_Guile_ConvertPtr(SCM s, void **result, swig_type_info *type, int flags) - *result = SCM_POINTER_VALUE(s); - return SWIG_OK; - #endif /* if SCM_MAJOR_VERSION >= 2 */ -- } else if (SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)) { -- /* we do not accept smobs representing destroyed pointers */ -+ } else if (SWIG_Guile_IsValidSmob(smob)) { - from = (swig_type_info *) SCM_CELL_WORD_2(smob); - if (!from) return SWIG_ERROR; - if (type) { -@@ -239,7 +251,7 @@ SWIG_Guile_MarkPointerNoncollectable(SCM s) - { - SCM smob = SWIG_Guile_GetSmob(s); - if (!SCM_NULLP(smob)) { -- if (SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)) { -+ if (SWIG_Guile_IsValidSmob(smob)) { - SCM_SET_CELL_TYPE(smob, swig_tag); - } - else scm_wrong_type_arg(NULL, 0, s); -@@ -252,7 +264,7 @@ SWIG_Guile_MarkPointerDestroyed(SCM s) - { - SCM smob = SWIG_Guile_GetSmob(s); - if (!SCM_NULLP(smob)) { -- if (SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)) { -+ if (SWIG_Guile_IsValidSmob(smob)) { - SCM_SET_CELL_TYPE(smob, swig_destroyed_tag); - } - else scm_wrong_type_arg(NULL, 0, s); -@@ -419,6 +431,8 @@ SWIG_Guile_Init () - scm_set_smob_print(swig_collectable_tag, print_collectable_swig); - scm_set_smob_equalp(swig_collectable_tag, equalp_swig); - scm_set_smob_free(swig_collectable_tag, free_swig); -+ /* For Guile >= 2.0.12. See libguile/smob.c:clear_smobnum */ -+ swig_finalized_tag = swig_collectable_tag & ~0xff00; - } - if (ensure_smob_tag(swig_module, &swig_destroyed_tag, - "destroyed-swig-pointer", "destroyed-swig-pointer-tag")) { diff --git a/gnu/packages/patches/tcl-fix-cross-compilation.patch b/gnu/packages/patches/tcl-fix-cross-compilation.patch new file mode 100644 index 0000000000..00c36b8f27 --- /dev/null +++ b/gnu/packages/patches/tcl-fix-cross-compilation.patch @@ -0,0 +1,39 @@ +From f7fa48c4c75a1e748dc5071e709c0b62ff739eaa Mon Sep 17 00:00:00 2001 +From: "jan.nijtmans" <nijtmans@users.sourceforge.net> +Date: Mon, 9 Dec 2019 10:02:20 +0000 +Subject: [PATCH] Fix [abd4abedd2]: Failed to build tk 8.6.10 with cross + compile + +Patch taken from upstream to fix cross-compilation. To be removed on next Tcl release. + +--- + compat/strtol.c | 2 +- + compat/strtoul.c | 2 +- + 2 files changed, 2 insertions(+), 2 deletions(-) + +diff --git a/compat/strtol.c b/compat/strtol.c +index b7f69196ce2..811006a64c3 100644 +--- a/compat/strtol.c ++++ b/compat/strtol.c +@@ -53,7 +53,7 @@ strtol( + */ + + p = string; +- while (TclIsSpaceProc(*p)) { ++ while (isspace(UCHAR(*p))) { + p += 1; + } + +diff --git a/compat/strtoul.c b/compat/strtoul.c +index e37eb05f823..15587f1da1a 100644 +--- a/compat/strtoul.c ++++ b/compat/strtoul.c +@@ -74,7 +74,7 @@ strtoul( + */ + + p = string; +- while (TclIsSpaceProc(*p)) { ++ while (isspace(UCHAR(*p))) { + p += 1; + } + if (*p == '-') { diff --git a/gnu/packages/patches/tcsh-fix-autotest.patch b/gnu/packages/patches/tcsh-fix-autotest.patch index 78444a1b2a..200867cb9b 100644 --- a/gnu/packages/patches/tcsh-fix-autotest.patch +++ b/gnu/packages/patches/tcsh-fix-autotest.patch @@ -63,38 +63,14 @@ AT_DATA([comment2.csh], [[echo testing...@%:@\ -@@ -567,10 +567,10 @@ run=3 -# Adapt to changes in sed 4.3: -# https://github.com/tcsh-org/tcsh/commit/2ad4fc1705893207598ed5cd21713ddf3f17bba0 - ]]) - AT_DATA([uniformity_test.csh], - [[ --set SERVICE_NAME_LOG = `cat batchsystem.properties | grep '^jdbc_url' | sed -ne 's/^[^=]*=[^@]*@[:blank:]*\([^$]*\)$/\1/p' | perl -pe 's/\s//g' | perl -pe 's/\)/\\\)/g' | perl -pe 's/\(/\\\(/g'` -+set SERVICE_NAME_LOG = `cat batchsystem.properties | grep '^jdbc_url' | sed -ne 's/^[^=]*=[^@]*@[[:blank:]]*\([^$]*\)$/\1/p' | perl -pe 's/\s//g' | perl -pe 's/\)/\\\)/g' | perl -pe 's/\(/\\\(/g'` - echo -n "$SERVICE_NAME_LOG" > ./output1 - --cat batchsystem.properties | grep '^jdbc_url' | sed -ne 's/^[^=]*=[^@]*@[:blank:]*\([^$]*\)$/\1/p' | perl -pe 's/\s//g' | perl -pe 's/\)/\\\)/g' | perl -pe 's/\(/\\\(/g' > ./output2 -+cat batchsystem.properties | grep '^jdbc_url' | sed -ne 's/^[^=]*=[^@]*@[[:blank:]]*\([^$]*\)$/\1/p' | perl -pe 's/\s//g' | perl -pe 's/\)/\\\)/g' | perl -pe 's/\(/\\\(/g' > ./output2 - - diff -uprN ./output1 ./output2 >& /dev/null - -@@ -587,7 +587,7 @@ AT_DATA([quoting_result_test.csh], - echo "(DESCRIPTION=(ADDRESS=(PROTOCOL=TCP\)(HOST=db\)(PORT=1521\)\)(CONNECT_DATA=(SERVER=DEDICATED\)(SERVICE_NAME=bns03\)\)\)" > ./expected_result - - set string = "jdbc_url=jdbc:oracle:thin:@(DESCRIPTION=(ADDRESS=(PROTOCOL=TCP)(HOST=db)(PORT=1521))(CONNECT_DATA=(SERVER=DEDICATED)(SERVICE_NAME=bns03)))" --set SERVICE_NAME_LOG = `echo "$string" | grep '^jdbc_url' | sed -ne 's/^[^=]*=[^@]*@[:blank:]*\([^$]*\)$/\1/p' | perl -pe 's/\)/\\\)/g'` -+set SERVICE_NAME_LOG = `echo "$string" | grep '^jdbc_url' | sed -ne 's/^[^=]*=[^@]*@[[:blank:]]*\([^$]*\)$/\1/p' | perl -pe 's/\)/\\\)/g'` - - echo "$SERVICE_NAME_LOG" > ./actual_result - --- tests/subst.at +++ tests/subst.at -@@ -54,7 +54,7 @@ AT_CHECK([echo 'echo ~; echo "$HOME"' | tcsh -f | uniq | wc -l | tr -d ' \t'], +@@ -54,7 +54,7 @@ AT_CHECK([export HOME=$(getent passwd $(id -un) | awk -F: '{ print $(NF - 1) }') , [1 ]) --AT_CHECK([echo "echo ~$(id -un)/foo; echo \"$HOME/foo\"" | tcsh -f | uniq dnl -+AT_CHECK([echo "echo ~$(id -un)/foo; echo \"$HOME/foo\"" | tcsh -f | grep -v "/homeless-shelter" | uniq dnl +-AT_CHECK([export HOME=$(getent passwd $(id -un) | awk -F: '{ print $(NF - 1) }'); echo "echo ~$(id -un)/foo; echo \"\$HOME/foo\"" | tcsh -f | uniq dnl ++AT_CHECK([export HOME=$(getent passwd $(id -un) | awk -F: '{ print $(NF - 1) }'); echo "echo ~$(id -un)//foo; echo \"\$HOME/foo\"" | tcsh -f | uniq dnl | wc -l | tr -d ' \t'], , [1 ]) @@ -110,21 +86,6 @@ ]]) chmod a+x args.sh AT_CHECK([tcsh -f listflags.csh], , -@@ -704,9 +705,9 @@ AT_CHECK([tcsh -f mail.csh], , -# This test fails by trying to change to the build user's home -# directory, which does not exist. - AT_CLEANUP - - --AT_SETUP([$ cdtohome]) --AT_CHECK([tcsh -f -c 'cd'], 0) --AT_CLEANUP -+#AT_SETUP([$ cdtohome]) -+#AT_CHECK([tcsh -f -c 'cd'], 0) -+#AT_CLEANUP - AT_SETUP([$ noimplicithome]) - AT_CHECK([tcsh -f -c 'unset cdtohome; cd'], 1, , [cd: Too few arguments. - ]) @@ -728,55 +729,57 @@ TCSH_UNTESTED([$ oid]) AT_SETUP([$ owd]) diff --git a/gnu/packages/patches/tcsh-fix-out-of-bounds-read.patch b/gnu/packages/patches/tcsh-fix-out-of-bounds-read.patch deleted file mode 100644 index 48c294f78e..0000000000 --- a/gnu/packages/patches/tcsh-fix-out-of-bounds-read.patch +++ /dev/null @@ -1,31 +0,0 @@ -Fix out-of-bounds read in c_substitute(): - -http://seclists.org/oss-sec/2016/q4/612 - -Patch copied from upstream source repository: - -https://github.com/tcsh-org/tcsh/commit/6a542dc4fb2ba26518a47e9b3a9bcd6a91b94596 - -From 6a542dc4fb2ba26518a47e9b3a9bcd6a91b94596 Mon Sep 17 00:00:00 2001 -From: christos <christos> -Date: Fri, 2 Dec 2016 16:59:28 +0000 -Subject: [PATCH] Fix out of bounds read (Brooks Davis) (reproduce by starting - tcsh and hitting tab at the prompt) - ---- - ed.chared.c | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/ed.chared.c b/ed.chared.c -index 1277e53..310393e 100644 ---- ed.chared.c -+++ ed.chared.c -@@ -750,7 +750,7 @@ c_substitute(void) - /* - * If we found a history character, go expand it. - */ -- if (HIST != '\0' && *p == HIST) -+ if (p >= InputBuf && HIST != '\0' && *p == HIST) - nr_exp = c_excl(p); - else - nr_exp = 0; diff --git a/gnu/packages/patches/vigra-python-compat.patch b/gnu/packages/patches/vigra-python-compat.patch new file mode 100644 index 0000000000..63c6abb326 --- /dev/null +++ b/gnu/packages/patches/vigra-python-compat.patch @@ -0,0 +1,18 @@ +Fix build with Boost + Python 3.7. + +Taken from upstream: +https://github.com/ukoethe/vigra/commit/a6fa62663c6a6b752ed0707e95f643e25867a0f9 + +diff --git a/vigranumpy/src/core/vigranumpycore.cxx b/vigranumpy/src/core/vigranumpycore.cxx +index ec38d3636..c81c6ae52 100644 +--- a/vigranumpy/src/core/vigranumpycore.cxx ++++ b/vigranumpy/src/core/vigranumpycore.cxx +@@ -61,7 +61,7 @@ UInt32 pychecksum(python::str const & s) + return checksum(data, size); + #else + Py_ssize_t size = 0; +- char * data = PyUnicode_AsUTF8AndSize(s.ptr(), &size); ++ const char * data = PyUnicode_AsUTF8AndSize(s.ptr(), &size); + return checksum(data, size); + #endif + } diff --git a/gnu/packages/patches/webkitgtk-icu-65.patch b/gnu/packages/patches/webkitgtk-icu-65.patch new file mode 100644 index 0000000000..66819c566b --- /dev/null +++ b/gnu/packages/patches/webkitgtk-icu-65.patch @@ -0,0 +1,47 @@ +Fix build with ICU 65. + +Taken from upstream: +https://bugs.webkit.org/show_bug.cgi?id=202600 +https://trac.webkit.org/r250747 + +diff --git a/Source/WTF/wtf/URLHelpers.cpp b/Source/WTF/wtf/URLHelpers.cpp +index 18e7f13cd615..c584f1a0cb7e 100644 +--- a/Source/WTF/wtf/URLHelpers.cpp ++++ b/Source/WTF/wtf/URLHelpers.cpp +@@ -301,7 +301,7 @@ static bool allCharactersInIDNScriptWhiteList(const UChar* buffer, int32_t lengt + Optional<UChar32> previousCodePoint; + while (i < length) { + UChar32 c; +- U16_NEXT(buffer, i, length, c) ++ U16_NEXT(buffer, i, length, c); + UErrorCode error = U_ZERO_ERROR; + UScriptCode script = uscript_getScript(c, &error); + if (error != U_ZERO_ERROR) { +diff --git a/Source/WebCore/dom/Document.cpp b/Source/WebCore/dom/Document.cpp +index 2443e24c9bc4..1fbb3a716006 100644 +--- a/Source/WebCore/dom/Document.cpp ++++ b/Source/WebCore/dom/Document.cpp +@@ -4954,12 +4954,12 @@ static bool isValidNameNonASCII(const UChar* characters, unsigned length) + unsigned i = 0; + + UChar32 c; +- U16_NEXT(characters, i, length, c) ++ U16_NEXT(characters, i, length, c); + if (!isValidNameStart(c)) + return false; + + while (i < length) { +- U16_NEXT(characters, i, length, c) ++ U16_NEXT(characters, i, length, c); + if (!isValidNamePart(c)) + return false; + } +@@ -5019,7 +5019,7 @@ ExceptionOr<std::pair<AtomString, AtomString>> Document::parseQualifiedName(cons + + for (unsigned i = 0; i < length; ) { + UChar32 c; +- U16_NEXT(qualifiedName, i, length, c) ++ U16_NEXT(qualifiedName, i, length, c); + if (c == ':') { + if (sawColon) + return Exception { InvalidCharacterError }; |