diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 56 |
1 files changed, 43 insertions, 13 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 6f75fba879..16a9d97a47 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2171,7 +2171,7 @@ bindings to almost all functions of SLEPc.") (define-public mumps (package (name "mumps") - (version "5.1.2") + (version "5.2.1") (source (origin (method url-fetch) @@ -2179,8 +2179,11 @@ bindings to almost all functions of SLEPc.") version ".tar.gz")) (sha256 (base32 - "1s9asin08zqzmh08257sdghhivvy9vjif7c53fhaxaax2kd5qd7b")) - (patches (search-patches "mumps-build-parallelism.patch")))) + "0jklh54x4y3ik1zkw6db7766kakjm5910diyaghfxxf8vwsgr26r")) + (patches (search-patches "mumps-build-parallelism.patch" + "mumps-shared-libseq.patch" + "mumps-shared-mumps.patch" + "mumps-shared-pord.patch")))) (build-system gnu-build-system) (inputs `(("fortran" ,gfortran) @@ -2210,15 +2213,17 @@ CC = gcc FC = gfortran FL = gfortran INCSEQ = -I$(topdir)/libseq -LIBSEQ = -L$(topdir)/libseq -lmpiseq +LIBSEQ = $(topdir)/libseq/libmpiseq.a LIBSEQNEEDED = libseqneeded~; CC = mpicc FC = mpifort FL = mpifort~] AR = ar vr # rules require trailing space, ugh... RANLIB = ranlib -LIBBLAS = -L~a -lopenblas~@[ -SCALAP = -L~a -lscalapack~] +BLASDIR = ~a +LIBBLAS = -Wl,-rpath=$(BLASDIR) -Wl,-rpath='$$ORIGIN' -L$(BLASDIR) -lopenblas~@[ +SCALAPDIR = ~a +SCALAP = -Wl,-rpath=$(SCALAPDIR) -Wl,-rpath='$$ORIGIN' -L$(SCALAPDIR) -lscalapack~] LIBOTHERS = -pthread CDEFS = -DAdd_ PIC = -fPIC @@ -2229,18 +2234,18 @@ INCS = $(INCSEQ) LIBS = $(SCALAP) $(LIBSEQ) LPORDDIR = $(topdir)/PORD/lib IPORD = -I$(topdir)/PORD/include -LPORD = -L$(LPORDDIR) -lpord +LPORD = $(LPORDDIR)/libpord.a ORDERINGSF = -Dpord~@[ METISDIR = ~a IMETIS = -I$(METISDIR)/include -LMETIS = -L$(METISDIR)/lib -lmetis +LMETIS = -Wl,-rpath $(METISDIR)/lib -L$(METISDIR)/lib -lmetis ORDERINGSF += -Dmetis~]~@[~:{ SCOTCHDIR = ~a ISCOTCH = -I$(SCOTCHDIR)/include -LSCOTCH = -L$(SCOTCHDIR)/lib ~a-lesmumps -lscotch -lscotcherr +LSCOTCH = -Wl,-rpath $(SCOTCHDIR)/lib -L$(SCOTCHDIR)/lib ~a-lesmumps -lscotch -lscotcherr ORDERINGSF += ~a~}~] ORDERINGSC = $(ORDERINGSF) -LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH) +LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH) $(LIBSEQ) IORDERINGSF = $(ISCOTCH) IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)" (assoc-ref inputs "mpi") @@ -2294,6 +2299,8 @@ IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)" (copy-recursively "include" (string-append out "/include")) (when (file-exists? "libseq/libmpiseq.a") (install-file "libseq/libmpiseq.a" libdir)) + (when (file-exists? "libseq/libmpiseq.so") + (install-file "libseq/libmpiseq.so" libdir)) #t)))))) (home-page "http://mumps.enseeiht.fr") (synopsis "Multifrontal sparse direct solver") @@ -3985,14 +3992,14 @@ supports compressed MAT files, as well as newer (version 7.3) MAT files.") (define-public vc (package (name "vc") - (version "1.3.3") + (version "1.4.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/VcDevel/Vc/releases/" "download/" version "/Vc-" version ".tar.gz")) (sha256 (base32 - "1zmlpn32jzb38smp3j834llmbix3whsrbw0h397qxysbw792kih8")))) + "17qili8bf8r78cng65yf4qmgna8kiqjqbgcqbric6v9j6nkhkrk8")))) (build-system cmake-build-system) (arguments '(#:configure-flags @@ -4000,7 +4007,30 @@ supports compressed MAT files, as well as newer (version 7.3) MAT files.") ;; By default, Vc will optimize for the CPU of the build machine. ;; Setting this to "none" makes it create portable binaries. See ;; "cmake/OptimizeForArchitecture.cmake". - "-DTARGET_ARCHITECTURE=none"))) + "-DTARGET_ARCHITECTURE=none") + #:phases (modify-phases %standard-phases + (add-after 'unpack 'copy-testdata + (lambda* (#:key inputs native-inputs #:allow-other-keys) + (let ((testdata (assoc-ref (or native-inputs inputs) + "testdata"))) + (copy-recursively testdata "tests/testdata") + #t)))))) + (native-inputs + `(("virtest" ,virtest) + + ;; This is a submodule in the git project, but not part of the + ;; released sources. See the git branch for the commit to take. + ("testdata" ,(let ((commit "9ada1f34d6a41f1b5553d6223f277eae72c039d3")) + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/VcDevel/vc-testdata") + (commit "9ada1f34d6a41f1b5553d6223f277eae72c039d3"))) + (file-name (git-file-name "vc-testdata" + (string-take commit 7))) + (sha256 + (base32 + "1hkhqib03qlcq412ym2dciynfxcdr2ygqhnplz4l1vissr1wnqn2"))))))) (synopsis "SIMD vector classes for C++") (description "Vc provides portable, zero-overhead C++ types for explicitly data-parallel programming. It is a library designed to ease explicit |